RNA recognition motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G16610 AT1G79100 |
| fragaria_vesca | FvH4_3g15770 FvH4_3g15770 FvH4_3g15770 |
| malus_domestica | MD10G1202400.v1.1 |
| prunus_persica | Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 Prupe.4G139800_v2.0.a1 |
| pyrus_communis | pycom05g20140 pycom10g17320 |
| rosa_chinensis | RchiOBHm_Chr5g0026571 |
| rosa_laevigata | RLG00000032936 |
| rosa_multiflora | Rmu_sc0004371.1_g000008 Rmu_sc0006854.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00052910 |
| rosa_rugosa | Rorug05G0093900 |
| rosa_samantha | Rh5AG186800 Rh5BG183800 Rh5CG203700 Rh5DG186100 |
| rosa_wichuraiana | Rw5G016950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 740 |
| AccB1I | GGYRCC | 1 cut(s) | 918 |
| AccBSI | CCGCTC | 1 cut(s) | 111 |
| AccII | CGCG | 2 cut(s) | 21, 768 |
| AccIII | TCCGGA | 1 cut(s) | 1122 |
| AclWI | GGATC | 4 cut(s) | 405, 712, 837, 1105 |
| AcsI | RAATTY | 2 cut(s) | 351, 518 |
| AcyI | GRCGYC | 1 cut(s) | 919 |
| AfaI | GTAC | 1 cut(s) | 378 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 20, 41, 809, 852, 853, 1046, 1160 |
| AflIII | ACRYGT | 1 cut(s) | 379 |
| AgsI | TTSAA | 4 cut(s) | 321, 442, 512, 1026 |
| AjiI | CACGTC | 2 cut(s) | 899, 1070 |
| AjnI | CCWGG | 3 cut(s) | 137, 211, 1102 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 259, 291, 907, 939 |
| AluBI | AGCT | 4 cut(s) | 174, 316, 388, 644 |
| AluI | AGCT | 4 cut(s) | 174, 316, 388, 644 |
| Alw26I | GTCTC | 5 cut(s) | 135, 652, 828, 969, 1060 |
| AlwI | GGATC | 4 cut(s) | 405, 712, 837, 1105 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 458 |
| Ama87I | CYCGRG | 1 cut(s) | 807 |
| Aor13HI | TCCGGA | 1 cut(s) | 1122 |
| AoxI | GGCC | 3 cut(s) | 337, 1007, 1151 |
| ApeKI | GCWGC | 6 cut(s) | 165, 171, 180, 879, 1176, 1185 |
| ApoI | RAATTY | 2 cut(s) | 351, 518 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1195 |
| AspLEI | GCGC | 3 cut(s) | 30, 218, 921 |
| AspS9I | GGNCC | 4 cut(s) | 141, 623, 1055, 1106 |
| AsuC2I | CCSGG | 2 cut(s) | 73, 127 |
| AsuHPI | GGTGA | 8 cut(s) | 69, 380, 660, 782, 918, 1029, 1092, 1191 |
| AvaI | CYCGRG | 1 cut(s) | 807 |
| AvaII | GGWCC | 4 cut(s) | 141, 623, 1055, 1106 |
| BanI | GGYRCC | 1 cut(s) | 918 |
| BanII | GRGCYC | 1 cut(s) | 946 |
| BbsI | GAAGAC | 1 cut(s) | 721 |
| BbvI | GCAGC | 6 cut(s) | 177, 183, 192, 891, 1188, 1197 |
| BccI | CCATC | 7 cut(s) | 250, 476, 491, 593, 614, 811, 1141 |
| BceAI | ACGGC | 2 cut(s) | 906, 972 |
| BciT130I | CCWGG | 3 cut(s) | 139, 213, 1104 |
| BciVI | GTATCC | 3 cut(s) | 422, 864, 1122 |
| BcnI | CCSGG | 2 cut(s) | 73, 127 |
| BcoDI | GTCTC | 5 cut(s) | 135, 652, 828, 969, 1060 |
| BfaI | CTAG | 2 cut(s) | 186, 722 |
| BfoI | RGCGCY | 3 cut(s) | 31, 219, 922 |
| BfuAI | ACCTGC | 1 cut(s) | 740 |
| BfuI | GTATCC | 3 cut(s) | 422, 864, 1122 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 835 |
| BglII | AGATCT | 1 cut(s) | 680 |
| BisI | GCNGC | 9 cut(s) | 35, 166, 169, 172, 181, 839, 880, 1177, 1186 |
| BlsI | GCNGC | 9 cut(s) | 36, 167, 170, 173, 182, 840, 881, 1178, 1187 |
| Bme1390I | CCNGG | 5 cut(s) | 73, 127, 139, 213, 1104 |
| Bme18I | GGWCC | 4 cut(s) | 141, 623, 1055, 1106 |
| BmeT110I | CYCGRG | 1 cut(s) | 807 |
| BmgBI | CACGTC | 2 cut(s) | 899, 1070 |
| BmgT120I | GGNCC | 4 cut(s) | 141, 623, 1055, 1106 |
| BmiI | GGNNCC | 3 cut(s) | 46, 52, 920 |
| BmrFI | CCNGG | 5 cut(s) | 73, 127, 139, 213, 1104 |
| BmrI | ACTGGG | 1 cut(s) | 842 |
| BmsI | GCATC | 2 cut(s) | 263, 445 |
| BmuI | ACTGGG | 1 cut(s) | 842 |
| BpiI | GAAGAC | 1 cut(s) | 721 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 949, 981 |
| BpmI | CTGGAG | 2 cut(s) | 121, 669 |
| Bpu10I | CCTNAGC | 1 cut(s) | 555 |
| BpuMI | CCSGG | 2 cut(s) | 73, 127 |
| BsaAI | YACGTR | 2 cut(s) | 433, 875 |
| BsaHI | GRCGYC | 1 cut(s) | 919 |
| BsaI | GGTCTC | 4 cut(s) | 135, 652, 828, 969 |
| BsaJI | CCNNGG | 7 cut(s) | 19, 266, 808, 833, 914, 1040, 1211 |
| BsaWI | WCCGGW | 2 cut(s) | 83, 1122 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 20, 41, 809, 852, 853, 1046, 1160 |
| Bse1I | ACTGG | 2 cut(s) | 686, 848 |
| Bse3DI | GCAATG | 1 cut(s) | 399 |
| BseAI | TCCGGA | 1 cut(s) | 1122 |
| BseBI | CCWGG | 3 cut(s) | 139, 213, 1104 |
| BseDI | CCNNGG | 7 cut(s) | 19, 266, 808, 833, 914, 1040, 1211 |
| BseGI | GGATG | 4 cut(s) | 59, 487, 625, 803 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 20, 41, 809, 852, 853, 1046, 1160 |
| BseMI | GCAATG | 1 cut(s) | 399 |
| BseMII | CTCAG | 2 cut(s) | 108, 545 |
| BseNI | ACTGG | 2 cut(s) | 686, 848 |
| BseXI | GCAGC | 6 cut(s) | 177, 183, 192, 891, 1188, 1197 |
| Bsh1236I | CGCG | 2 cut(s) | 21, 768 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 3 cut(s) | 339, 1009, 1153 |
| BshNI | GGYRCC | 1 cut(s) | 918 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiHKCI | CYCGRG | 1 cut(s) | 807 |
| BsiSI | CCGG | 7 cut(s) | 42, 48, 73, 84, 127, 281, 1123 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 20, 41, 809, 852, 853, 1046, 1160 |
| BsmAI | GTCTC | 5 cut(s) | 135, 652, 828, 969, 1060 |
| BsmBI | CGTCTC | 1 cut(s) | 1060 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsnI | GGCC | 3 cut(s) | 339, 1009, 1153 |
| Bso31I | GGTCTC | 4 cut(s) | 135, 652, 828, 969 |
| BsoBI | CYCGRG | 1 cut(s) | 807 |
| Bsp1286I | GDGCHC | 1 cut(s) | 946 |
| Bsp13I | TCCGGA | 1 cut(s) | 1122 |
| Bsp1407I | TGTACA | 1 cut(s) | 376 |
| Bsp143I | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| BspANI | GGCC | 3 cut(s) | 339, 1009, 1153 |
| BspCNI | CTCAG | 2 cut(s) | 107, 544 |
| BspEI | TCCGGA | 1 cut(s) | 1122 |
| BspFNI | CGCG | 2 cut(s) | 21, 768 |
| BspHI | TCATGA | 1 cut(s) | 286 |
| BspLI | GGNNCC | 3 cut(s) | 46, 52, 920 |
| BspMI | ACCTGC | 1 cut(s) | 740 |
| BspPI | GGATC | 4 cut(s) | 405, 712, 837, 1105 |
| BspQI | GCTCTTC | 1 cut(s) | 106 |
| BspT107I | GGYRCC | 1 cut(s) | 918 |
| BspTNI | GGTCTC | 4 cut(s) | 135, 652, 828, 969 |
| BsrBI | CCGCTC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 1 cut(s) | 399 |
| BsrGI | TGTACA | 1 cut(s) | 376 |
| BsrI | ACTGG | 2 cut(s) | 686, 848 |
| BssECI | CCNNGG | 7 cut(s) | 19, 266, 808, 833, 914, 1040, 1211 |
| BssMI | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| BssNI | GRCGYC | 1 cut(s) | 919 |
| BssT1I | CCWWGG | 3 cut(s) | 266, 833, 914 |
| Bst2UI | CCWGG | 3 cut(s) | 139, 213, 1104 |
| Bst4CI | ACNGT | 1 cut(s) | 589 |
| Bst6I | CTCTTC | 2 cut(s) | 106, 1209 |
| BstACI | GRCGYC | 1 cut(s) | 919 |
| BstAUI | TGTACA | 1 cut(s) | 376 |
| BstBAI | YACGTR | 2 cut(s) | 433, 875 |
| BstC8I | GCNNGC | 4 cut(s) | 32, 390, 1011, 1155 |
| BstDEI | CTNAG | 3 cut(s) | 94, 531, 555 |
| BstDSI | CCRYGG | 2 cut(s) | 19, 1040 |
| BstEII | GGTNACC | 1 cut(s) | 75 |
| BstF5I | GGATG | 4 cut(s) | 59, 487, 625, 803 |
| BstFNI | CGCG | 2 cut(s) | 21, 768 |
| BstH2I | RGCGCY | 3 cut(s) | 31, 219, 922 |
| BstHHI | GCGC | 3 cut(s) | 30, 218, 921 |
| BstKTI | GATC | 7 cut(s) | 233, 400, 683, 707, 845, 1031, 1100 |
| BstMAI | GTCTC | 5 cut(s) | 135, 652, 828, 969, 1060 |
| BstMBI | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstNI | CCWGG | 3 cut(s) | 139, 213, 1104 |
| BstNSI | RCATGY | 1 cut(s) | 383 |
| BstPI | GGTNACC | 1 cut(s) | 75 |
| BstSCI | CCNGG | 5 cut(s) | 71, 125, 137, 211, 1102 |
| BstUI | CGCG | 2 cut(s) | 21, 768 |
| BstV1I | GCAGC | 6 cut(s) | 177, 183, 192, 891, 1188, 1197 |
| BstV2I | GAAGAC | 1 cut(s) | 721 |
| BstX2I | RGATCY | 2 cut(s) | 680, 704 |
| BstYI | RGATCY | 2 cut(s) | 680, 704 |
| BsuI | GTATCC | 3 cut(s) | 422, 864, 1122 |
| BsuRI | GGCC | 3 cut(s) | 339, 1009, 1153 |
| BtgI | CCRYGG | 2 cut(s) | 19, 1040 |
| BtgZI | GCGATG | 1 cut(s) | 1076 |
| BtrI | CACGTC | 2 cut(s) | 899, 1070 |
| BtsCI | GGATG | 4 cut(s) | 59, 487, 625, 803 |
| BtsIMutI | CAGTG | 1 cut(s) | 693 |
| BveI | ACCTGC | 1 cut(s) | 740 |
| Cac8I | GCNNGC | 4 cut(s) | 32, 390, 1011, 1155 |
| CaiI | CAGNNNCTG | 1 cut(s) | 458 |
| CciI | TCATGA | 1 cut(s) | 286 |
| CfoI | GCGC | 3 cut(s) | 30, 218, 921 |
| Cfr13I | GGNCC | 4 cut(s) | 141, 623, 1055, 1106 |
| Cfr42I | CCGCGG | 1 cut(s) | 22 |
| CseI | GACGC | 2 cut(s) | 524, 774 |
| CsiI | ACCWGGT | 1 cut(s) | 1102 |
| Csp6I | GTAC | 1 cut(s) | 377 |
| CviAII | CATG | 3 cut(s) | 287, 380, 478 |
| CviQI | GTAC | 1 cut(s) | 377 |
| DdeI | CTNAG | 3 cut(s) | 94, 531, 555 |
| DinI | GGCGCC | 1 cut(s) | 920 |
| DpnI | GATC | 7 cut(s) | 232, 399, 682, 706, 844, 1030, 1099 |
| DpnII | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| Eam1104I | CTCTTC | 2 cut(s) | 106, 1209 |
| EarI | CTCTTC | 2 cut(s) | 106, 1209 |
| EciI | GGCGGA | 3 cut(s) | 43, 136, 816 |
| Eco130I | CCWWGG | 3 cut(s) | 266, 833, 914 |
| Eco147I | AGGCCT | 2 cut(s) | 1009, 1153 |
| Eco24I | GRGCYC | 1 cut(s) | 946 |
| Eco31I | GGTCTC | 4 cut(s) | 135, 652, 828, 969 |
| Eco47I | GGWCC | 4 cut(s) | 141, 623, 1055, 1106 |
| Eco88I | CYCGRG | 1 cut(s) | 807 |
| Eco91I | GGTNACC | 1 cut(s) | 75 |
| EcoO109I | RGGNCCY | 1 cut(s) | 141 |
| EcoO65I | GGTNACC | 1 cut(s) | 75 |
| EcoRII | CCWGG | 3 cut(s) | 137, 211, 1102 |
| EcoT14I | CCWWGG | 3 cut(s) | 266, 833, 914 |
| EcoT38I | GRGCYC | 1 cut(s) | 946 |
| EgeI | GGCGCC | 1 cut(s) | 920 |
| EheI | GGCGCC | 1 cut(s) | 920 |
| ErhI | CCWWGG | 3 cut(s) | 266, 833, 914 |
| Esp3I | CGTCTC | 1 cut(s) | 1060 |
| FaeI | CATG | 3 cut(s) | 290, 383, 481 |
| FaiI | YATR | 6 cut(s) | 288, 366, 381, 426, 479, 1222 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 259, 291 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 3 cut(s) | 286, 379, 477 |
| FauI | CCCGC | 2 cut(s) | 116, 170 |
| Fnu4HI | GCNGC | 9 cut(s) | 35, 166, 169, 172, 181, 839, 880, 1177, 1186 |
| FokI | GGATG | 4 cut(s) | 46, 494, 632, 790 |
| FriOI | GRGCYC | 1 cut(s) | 946 |
| Fsp4HI | GCNGC | 9 cut(s) | 35, 166, 169, 172, 181, 839, 880, 1177, 1186 |
| FspBI | CTAG | 2 cut(s) | 186, 722 |
| GlaI | GCGC | 3 cut(s) | 29, 217, 920 |
| GluI | GCNGC | 9 cut(s) | 35, 166, 169, 172, 181, 839, 880, 1177, 1186 |
| GsuI | CTGGAG | 2 cut(s) | 121, 669 |
| HaeII | RGCGCY | 3 cut(s) | 31, 219, 922 |
| HaeIII | GGCC | 3 cut(s) | 339, 1009, 1153 |
| HapII | CCGG | 7 cut(s) | 42, 48, 73, 84, 127, 281, 1123 |
| HgaI | GACGC | 2 cut(s) | 524, 774 |
| HhaI | GCGC | 3 cut(s) | 30, 218, 921 |
| Hin1I | GRCGYC | 1 cut(s) | 919 |
| Hin1II | CATG | 3 cut(s) | 290, 383, 481 |
| Hin6I | GCGC | 3 cut(s) | 28, 216, 919 |
| HinP1I | GCGC | 3 cut(s) | 28, 216, 919 |
| HindIII | AAGCTT | 2 cut(s) | 314, 642 |
| HinfI | GANTC | 2 cut(s) | 290, 725 |
| HpaII | CCGG | 7 cut(s) | 42, 48, 73, 84, 127, 281, 1123 |
| HphI | GGTGA | 8 cut(s) | 69, 380, 660, 782, 918, 1029, 1092, 1191 |
| Hpy166II | GTNNAC | 3 cut(s) | 926, 1109, 1199 |
| Hpy188I | TCNGA | 4 cut(s) | 540, 657, 957, 1215 |
| Hpy188III | TCNNGA | 6 cut(s) | 287, 442, 807, 1026, 1095, 1123 |
| Hpy8I | GTNNAC | 3 cut(s) | 926, 1109, 1199 |
| Hpy99I | CGWCG | 6 cut(s) | 225, 657, 744, 747, 768, 942 |
| HpyAV | CCTTC | 9 cut(s) | 48, 90, 329, 669, 675, 780, 861, 954, 1143 |
| HpyCH4III | ACNGT | 1 cut(s) | 589 |
| HpyCH4IV | ACGT | 6 cut(s) | 432, 814, 874, 898, 1021, 1069 |
| HpyCH4V | TGCA | 1 cut(s) | 1157 |
| HpyF3I | CTNAG | 3 cut(s) | 94, 531, 555 |
| HpySE526I | ACGT | 6 cut(s) | 432, 814, 874, 898, 1021, 1069 |
| Hsp92I | GRCGYC | 1 cut(s) | 919 |
| Hsp92II | CATG | 3 cut(s) | 290, 383, 481 |
| HspAI | GCGC | 3 cut(s) | 28, 216, 919 |
| KasI | GGCGCC | 1 cut(s) | 918 |
| Kpn2I | TCCGGA | 1 cut(s) | 1122 |
| KspI | CCGCGG | 1 cut(s) | 22 |
| Kzo9I | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| LguI | GCTCTTC | 1 cut(s) | 106 |
| LmnI | GCTCC | 5 cut(s) | 50, 56, 116, 140, 577 |
| Lsp1109I | GCAGC | 6 cut(s) | 177, 183, 192, 891, 1188, 1197 |
| LweI | GCATC | 2 cut(s) | 263, 445 |
| MabI | ACCWGGT | 1 cut(s) | 1102 |
| MaeI | CTAG | 2 cut(s) | 186, 722 |
| MaeII | ACGT | 6 cut(s) | 432, 814, 874, 898, 1021, 1069 |
| MaeIII | GTNAC | 4 cut(s) | 75, 291, 565, 1017 |
| MalI | GATC | 7 cut(s) | 232, 399, 682, 706, 844, 1030, 1099 |
| MbiI | CCGCTC | 1 cut(s) | 111 |
| MboI | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| MboII | GAAGA | 9 cut(s) | 19, 93, 267, 293, 404, 726, 1080, 1176, 1196 |
| MflI | RGATCY | 2 cut(s) | 680, 704 |
| MhlI | GDGCHC | 1 cut(s) | 946 |
| MluCI | AATT | 4 cut(s) | 351, 492, 518, 1032 |
| Mly113I | GGCGCC | 1 cut(s) | 919 |
| MlyI | GAGTC | 1 cut(s) | 299 |
| MmeI | TCCRAC | 1 cut(s) | 635 |
| MroI | TCCGGA | 1 cut(s) | 1122 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1195 |
| MseI | TTAA | 2 cut(s) | 344, 408 |
| MslI | CAYNNNNRTG | 1 cut(s) | 480 |
| MspA1I | CMGCKG | 2 cut(s) | 21, 168 |
| MspI | CCGG | 7 cut(s) | 42, 48, 73, 84, 127, 281, 1123 |
| MspR9I | CCNGG | 5 cut(s) | 73, 127, 139, 213, 1104 |
| MvaI | CCWGG | 3 cut(s) | 139, 213, 1104 |
| MvnI | CGCG | 2 cut(s) | 21, 768 |
| NarI | GGCGCC | 1 cut(s) | 919 |
| NciI | CCSGG | 2 cut(s) | 73, 127 |
| NdeII | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| NlaIII | CATG | 3 cut(s) | 290, 383, 481 |
| NlaIV | GGNNCC | 3 cut(s) | 46, 52, 920 |
| NmuCI | GTSAC | 4 cut(s) | 75, 291, 565, 1017 |
| NspI | RCATGY | 1 cut(s) | 383 |
| PagI | TCATGA | 1 cut(s) | 286 |
| PceI | AGGCCT | 2 cut(s) | 1009, 1153 |
| PciI | ACATGT | 1 cut(s) | 379 |
| PciSI | GCTCTTC | 1 cut(s) | 106 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 226, 943, 1048 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1195 |
| PfeI | GAWTC | 1 cut(s) | 725 |
| PflFI | GACNNNGTC | 1 cut(s) | 225 |
| PkrI | GCNGC | 9 cut(s) | 36, 167, 170, 173, 182, 840, 881, 1178, 1187 |
| PleI | GAGTC | 1 cut(s) | 298 |
| PluTI | GGCGCC | 1 cut(s) | 922 |
| PpsI | GAGTC | 1 cut(s) | 298 |
| Ppu21I | YACGTR | 2 cut(s) | 433, 875 |
| PpuMI | RGGWCCY | 1 cut(s) | 141 |
| PscI | ACATGT | 1 cut(s) | 379 |
| Psp5II | RGGWCCY | 1 cut(s) | 141 |
| Psp6I | CCWGG | 3 cut(s) | 137, 211, 1102 |
| PspEI | GGTNACC | 1 cut(s) | 75 |
| PspGI | CCWGG | 3 cut(s) | 137, 211, 1102 |
| PspN4I | GGNNCC | 3 cut(s) | 46, 52, 920 |
| PspPI | GGNCC | 4 cut(s) | 141, 623, 1055, 1106 |
| PspPPI | RGGWCCY | 1 cut(s) | 141 |
| PstNI | CAGNNNCTG | 1 cut(s) | 458 |
| PsuI | RGATCY | 2 cut(s) | 680, 704 |
| PsyI | GACNNNGTC | 1 cut(s) | 225 |
| RsaI | GTAC | 1 cut(s) | 378 |
| RsaNI | GTAC | 1 cut(s) | 377 |
| RseI | CAYNNNNRTG | 1 cut(s) | 480 |
| SacII | CCGCGG | 1 cut(s) | 22 |
| SapI | GCTCTTC | 1 cut(s) | 106 |
| SaqAI | TTAA | 2 cut(s) | 344, 408 |
| SatI | GCNGC | 9 cut(s) | 35, 166, 169, 172, 181, 839, 880, 1177, 1186 |
| Sau3AI | GATC | 7 cut(s) | 230, 397, 680, 704, 842, 1028, 1097 |
| Sau96I | GGNCC | 4 cut(s) | 141, 623, 1055, 1106 |
| SchI | GAGTC | 1 cut(s) | 299 |
| ScrFI | CCNGG | 5 cut(s) | 73, 127, 139, 213, 1104 |
| SduI | GDGCHC | 1 cut(s) | 946 |
| SexAI | ACCWGGT | 1 cut(s) | 1102 |
| SfaNI | GCATC | 2 cut(s) | 263, 445 |
| SfoI | GGCGCC | 1 cut(s) | 920 |
| Sfr303I | CCGCGG | 1 cut(s) | 22 |
| SgrBI | CCGCGG | 1 cut(s) | 22 |
| SinI | GGWCC | 4 cut(s) | 141, 623, 1055, 1106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 480 |
| Sse9I | AATT | 4 cut(s) | 351, 492, 518, 1032 |
| SseBI | AGGCCT | 2 cut(s) | 1009, 1153 |
| SspDI | GGCGCC | 1 cut(s) | 918 |
| SspMI | CTAG | 2 cut(s) | 186, 722 |
| StuI | AGGCCT | 2 cut(s) | 1009, 1153 |
| StyD4I | CCNGG | 5 cut(s) | 71, 125, 137, 211, 1102 |
| StyI | CCWWGG | 3 cut(s) | 266, 833, 914 |
| TaaI | ACNGT | 1 cut(s) | 589 |
| TaiI | ACGT | 6 cut(s) | 435, 817, 877, 901, 1024, 1072 |
| TaqI | TCGA | 5 cut(s) | 220, 229, 745, 937, 1051 |
| TaqII | GACCGA | 1 cut(s) | 1005 |
| TasI | AATT | 4 cut(s) | 351, 492, 518, 1032 |
| TatI | WGTACW | 1 cut(s) | 376 |
| TauI | GCSGC | 3 cut(s) | 37, 171, 841 |
| TfiI | GAWTC | 1 cut(s) | 725 |
| Tru1I | TTAA | 2 cut(s) | 344, 408 |
| Tru9I | TTAA | 2 cut(s) | 344, 408 |
| TscAI | CASTG | 1 cut(s) | 693 |
| TseFI | GTSAC | 4 cut(s) | 75, 291, 565, 1017 |
| TseI | GCWGC | 6 cut(s) | 165, 171, 180, 879, 1176, 1185 |
| Tsp45I | GTSAC | 4 cut(s) | 75, 291, 565, 1017 |
| TspDTI | ATGAA | 2 cut(s) | 78, 348 |
| TspGWI | ACGGA | 1 cut(s) | 1057 |
| TspRI | CASTG | 1 cut(s) | 693 |
| Tth111I | GACNNNGTC | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 4 cut(s) | 141, 623, 1055, 1106 |
| XapI | RAATTY | 2 cut(s) | 351, 518 |
| XceI | RCATGY | 1 cut(s) | 383 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1195 |
| XspI | CTAG | 2 cut(s) | 186, 722 |