pycom05g20140

rnps1,sr45

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
23014534 .. 23019876
5343 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20140.6

Sequence Viewer

Length: 1200 bp
ATGGCGAAGCCAACCCGAGCCCGTCGCTCGCCATCTGGCTCCGTGTCCGGCTCATCCTCCCGGTCCCGTTCCCGCTCCTACTCAGGCTCCGACTCCCTCTCCAGCTCGCGTTCTCGCTCTCGATCTCGCTCCAGGTCCTTCACCTCTTCCTCCTCTCCGTCCCGGAGCGGCAGCTCTCGCAGCCGAAGTCCCCCTGCCTCCAAAAAAAGTCCTGAAGTTGCAAGACGAGGTCGTTCTCCACCACCACAATCTAAAAAGGCGTCACCGCCCCCAAGGAAAGCTTCTCCAGTTCATCAGTCACTTGTTCTTCACATTGACGCGCTTACAAGGAATGTGCATGAAGGCCATTTACGAGAAATATTCTGTAACTTTGGGGAAGTTGTCAATGTGGAGCTGGCAATGGATCGTACTGTTAATCTTCCAAAAGGATTTGGATATGTTGAGTTCAAAACACGAGCAGATGCTGAAAAAGCACAATTATACATGGACGGCGCTCAAATCGATGGTAATGTTGTTCGAGCAAAGTTTACATTACCTCAACGTCAGAAGGTGTCTTCTCCTCCTAAGCCTGTCGCCACTGCTCCAAAGAGAGATGCTGTGAAAACTGATGGTGCCAGTGCTGACAAAGATGCACCAAGGCGACCGAGGGAAGCTTCTCCTCGTCGGAGAGGTGTTCCCTCACCACGAAGGAGATCACCTGTCGGTCGAAGAGGTGAATCTCCAAGACGACCATTAGATTCTCCACCACGTCGTCGTGCTGCCTCGCCTGCTCGTCCTTACCGCCATGGTGGTTCACCTCCAAGGAAAAGGCTTGCATCTCCACCAAGAGGTCGTTCTGGATCACCGCCACCAAGGCGACGTTCCCCTGTTAGAAGGATACGAGGCAGTCCCATTCGTAGACGCTCTCCAGGACCTCCAAGGCTTCACCTCCTAGACGGTTTCGTAGTCCTCCCAGAAGGTCTCCAATTCGTAGGCGTACCCGTTCTCCCATTCGTAGGCCTGGTCGATCCCGTTCAAGGTCAATCTCGCCGCGGAGAGGTCGAGGACCAGCTACTAGACGTGGGAGGTCATCGTCATCTGGATCGACCTAGTCCACGAAAGGCACCCCGAAGAATCTCTCGCAGTCCGAGAAGGCCTTTGAGGGGAAGAAGCAGTAGCAAGAGCAGCACCAGCAGTTCACCCCCTCGTAAGCCACTTTAG

Protein Analysis

400

Amino Acids

43.74

Weight (kDa)

12.0

Isoelectric Point (pI)

121.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 611, 1102
AccBSI CCGCTC 2 cut(s) 75, 168
AccI GTMKAC 1 cut(s) 898
AccII CGCG 3 cut(s) 109, 320, 1032
AciI CCGC 7 cut(s) 73, 168, 266, 781, 845, 1030, 1032
AclWI GGATC 4 cut(s) 411, 847, 1001, 1089
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 2 cut(s) 409, 978
AfiI CCNNNNNNNGG 5 cut(s) 827, 995, 1016, 1036, 1142
AgsI TTSAA 2 cut(s) 448, 1016
AjiI CACGTC 2 cut(s) 749, 1060
AjnI CCWGG 3 cut(s) 131, 907, 999
AjuI GAANNNNNNNTTGG 6 cut(s) 265, 297, 817, 844, 849, 876
AluBI AGCT 6 cut(s) 105, 174, 281, 394, 653, 1051
AluI AGCT 6 cut(s) 105, 174, 281, 394, 653, 1051
Alw26I GTCTC 1 cut(s) 965
AlwI GGATC 4 cut(s) 411, 847, 1001, 1089
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 3 cut(s) 343, 997, 1133
ApeKI GCWGC 4 cut(s) 171, 180, 758, 1164
AspLEI GCGC 2 cut(s) 322, 494
AspS9I GGNCC 4 cut(s) 63, 135, 911, 1045
AsuC2I CCSGG 2 cut(s) 61, 163
AsuHPI GGTGA 9 cut(s) 133, 255, 672, 687, 725, 786, 834, 917, 1170
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 4 cut(s) 63, 135, 911, 1045
BanI GGYRCC 2 cut(s) 611, 1102
BanII GRGCYC 1 cut(s) 22
BarI GAAGNNNNNNTAC 2 cut(s) 333, 365
BauI CACGAG 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 4 cut(s) 183, 192, 745, 1176
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 3 cut(s) 133, 909, 1001
BciVI GTATCC 1 cut(s) 870
BcnI CCSGG 2 cut(s) 61, 163
BcoDI GTCTC 1 cut(s) 965
BfaI CTAG 3 cut(s) 932, 1055, 1089
BfoI RGCGCY 1 cut(s) 495
BfuI GTATCC 1 cut(s) 870
BglI GCCNNNNNGGC 1 cut(s) 853
BisI GCNGC 6 cut(s) 169, 172, 181, 759, 1030, 1165
BlsI GCNGC 6 cut(s) 170, 173, 182, 760, 1031, 1166
Bme1390I CCNGG 5 cut(s) 61, 133, 163, 909, 1001
Bme18I GGWCC 4 cut(s) 63, 135, 911, 1045
BmeT110I CYCGRG 1 cut(s) 15
BmgBI CACGTC 2 cut(s) 749, 1060
BmgT120I GGNCC 4 cut(s) 63, 135, 911, 1045
BmiI GGNNCC 5 cut(s) 40, 65, 88, 613, 1104
BmrFI CCNGG 5 cut(s) 61, 133, 163, 909, 1001
BmsI GCATC 4 cut(s) 451, 583, 619, 824
BpiI GAAGAC 1 cut(s) 546
BpmI CTGGAG 4 cut(s) 85, 115, 270, 891
Bpu10I CCTNAGC 1 cut(s) 564
BpuMI CCSGG 2 cut(s) 61, 163
Bsa29I ATCGAT 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 8 cut(s) 272, 635, 644, 784, 800, 851, 917, 1030
BsaXI ACNNNNNCTCC 6 cut(s) 71, 83, 101, 113, 969, 999
Bsc4I CCNNNNNNNGG 5 cut(s) 827, 995, 1016, 1036, 1142
Bse1I ACTGG 2 cut(s) 287, 615
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 3 cut(s) 133, 909, 1001
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 8 cut(s) 272, 635, 644, 784, 800, 851, 917, 1030
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 5 cut(s) 827, 995, 1016, 1036, 1142
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 287, 615
BseRI GAGGAG 3 cut(s) 142, 549, 648
BseXI GCAGC 4 cut(s) 183, 192, 745, 1176
Bsh1236I CGCG 3 cut(s) 109, 320, 1032
Bsh1285I CGRYCG 2 cut(s) 644, 706
BshFI GGCC 3 cut(s) 345, 999, 1135
BshNI GGYRCC 2 cut(s) 611, 1102
BshVI ATCGAT 1 cut(s) 501
BsiEI CGRYCG 2 cut(s) 644, 706
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 3 cut(s) 48, 61, 163
BslFI GGGAC 4 cut(s) 49, 145, 174, 873
BslI CCNNNNNNNGG 5 cut(s) 827, 995, 1016, 1036, 1142
BsmAI GTCTC 1 cut(s) 965
BsmFI GGGAC 4 cut(s) 49, 145, 174, 873
BsnI GGCC 3 cut(s) 345, 999, 1135
Bso31I GGTCTC 1 cut(s) 965
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
Bsp19I CCATGG 1 cut(s) 784
BspACI CCGC 7 cut(s) 73, 168, 266, 781, 845, 1030, 1032
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 501
BspFNI CGCG 3 cut(s) 109, 320, 1032
BspLI GGNNCC 5 cut(s) 40, 65, 88, 613, 1104
BspPI GGATC 4 cut(s) 411, 847, 1001, 1089
BspT107I GGYRCC 2 cut(s) 611, 1102
BspTNI GGTCTC 1 cut(s) 965
BsrBI CCGCTC 2 cut(s) 75, 168
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 287, 615
BssECI CCNNGG 8 cut(s) 272, 635, 644, 784, 800, 851, 917, 1030
BssMI GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
BssNI GRCGYC 1 cut(s) 260
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 6 cut(s) 272, 635, 784, 800, 851, 917
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 133, 909, 1001
Bst4CI ACNGT 2 cut(s) 412, 938
Bst6I CTCTTC 2 cut(s) 151, 703
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 5 cut(s) 29, 107, 396, 768, 813
BstDEI CTNAG 2 cut(s) 82, 564
BstDSI CCRYGG 2 cut(s) 784, 1030
BstF5I GGATG 1 cut(s) 53
BstFNI CGCG 3 cut(s) 109, 320, 1032
BstH2I RGCGCY 1 cut(s) 495
BstHHI GCGC 2 cut(s) 322, 494
BstKTI GATC 6 cut(s) 125, 406, 695, 842, 1009, 1084
BstMAI GTCTC 1 cut(s) 965
BstMBI GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
BstMCI CGRYCG 2 cut(s) 644, 706
BstMWI GCNNNNNNNGC 7 cut(s) 177, 180, 470, 767, 853, 1164, 1170
BstNI CCWGG 3 cut(s) 133, 909, 1001
BstSCI CCNGG 5 cut(s) 59, 131, 161, 907, 999
BstUI CGCG 3 cut(s) 109, 320, 1032
BstV1I GCAGC 4 cut(s) 183, 192, 745, 1176
BstV2I GAAGAC 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 501
BsuI GTATCC 1 cut(s) 870
BsuRI GGCC 3 cut(s) 345, 999, 1135
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 2 cut(s) 784, 1030
BtrI CACGTC 2 cut(s) 749, 1060
BtsCI GGATG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 576, 622
Cac8I GCNNGC 5 cut(s) 29, 107, 396, 768, 813
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 2 cut(s) 322, 494
Cfr13I GGNCC 4 cut(s) 63, 135, 911, 1045
Cfr42I CCGCGG 1 cut(s) 1033
ClaI ATCGAT 1 cut(s) 501
CseI GACGC 3 cut(s) 249, 326, 909
Csp6I GTAC 2 cut(s) 408, 977
CviAII CATG 3 cut(s) 338, 484, 785
CviQI GTAC 2 cut(s) 408, 977
DdeI CTNAG 2 cut(s) 82, 564
DpnI GATC 6 cut(s) 124, 405, 694, 841, 1008, 1083
DpnII GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
Eam1104I CTCTTC 2 cut(s) 151, 703
EarI CTCTTC 2 cut(s) 151, 703
Eco130I CCWWGG 6 cut(s) 272, 635, 784, 800, 851, 917
Eco147I AGGCCT 2 cut(s) 999, 1135
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 965
Eco47I GGWCC 4 cut(s) 63, 135, 911, 1045
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 135, 911
EcoRII CCWGG 3 cut(s) 131, 907, 999
EcoT14I CCWWGG 6 cut(s) 272, 635, 784, 800, 851, 917
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 6 cut(s) 272, 635, 784, 800, 851, 917
FaeI CATG 3 cut(s) 341, 487, 788
FaiI YATR 5 cut(s) 339, 438, 481, 485, 786
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 4 cut(s) 49, 145, 174, 873
FatI CATG 3 cut(s) 337, 483, 784
FauI CCCGC 1 cut(s) 80
FblI GTMKAC 1 cut(s) 898
Fnu4HI GCNGC 6 cut(s) 169, 172, 181, 759, 1030, 1165
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 169, 172, 181, 759, 1030, 1165
FspBI CTAG 3 cut(s) 932, 1055, 1089
GlaI GCGC 2 cut(s) 321, 493
GluI GCNGC 6 cut(s) 169, 172, 181, 759, 1030, 1165
GsuI CTGGAG 4 cut(s) 85, 115, 270, 891
HaeII RGCGCY 1 cut(s) 495
HaeIII GGCC 3 cut(s) 345, 999, 1135
HapII CCGG 3 cut(s) 48, 61, 163
HgaI GACGC 3 cut(s) 249, 326, 909
HhaI GCGC 2 cut(s) 322, 494
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 3 cut(s) 341, 487, 788
Hin6I GCGC 2 cut(s) 320, 492
HinP1I GCGC 2 cut(s) 320, 492
HindIII AAGCTT 2 cut(s) 279, 651
HinfI GANTC 4 cut(s) 92, 716, 737, 1113
HpaII CCGG 3 cut(s) 48, 61, 163
HphI GGTGA 9 cut(s) 133, 255, 672, 687, 725, 786, 834, 917, 1170
Hpy166II GTNNAC 5 cut(s) 528, 794, 899, 1094, 1178
Hpy188I TCNGA 4 cut(s) 91, 546, 666, 1128
Hpy188III TCNNGA 4 cut(s) 120, 212, 837, 1079
Hpy8I GTNNAC 5 cut(s) 528, 794, 899, 1094, 1178
Hpy99I CGWCG 5 cut(s) 27, 666, 753, 756, 861
HpyAV CCTTC 7 cut(s) 148, 335, 541, 681, 867, 950, 1125
HpyCH4III ACNGT 2 cut(s) 412, 938
HpyCH4IV ACGT 4 cut(s) 541, 748, 859, 1059
HpyCH4V TGCA 4 cut(s) 221, 337, 632, 815
HpyF10VI GCNNNNNNNGC 7 cut(s) 177, 180, 470, 767, 853, 1164, 1170
HpyF3I CTNAG 2 cut(s) 82, 564
HpySE526I ACGT 4 cut(s) 541, 748, 859, 1059
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 3 cut(s) 341, 487, 788
HspAI GCGC 2 cut(s) 320, 492
KspI CCGCGG 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
LmnI GCTCC 7 cut(s) 44, 80, 92, 134, 165, 391, 586
Lsp1109I GCAGC 4 cut(s) 183, 192, 745, 1176
LweI GCATC 4 cut(s) 451, 583, 619, 824
MaeI CTAG 3 cut(s) 932, 1055, 1089
MaeII ACGT 4 cut(s) 541, 748, 859, 1059
MaeIII GTNAC 3 cut(s) 261, 297, 365
MalI GATC 6 cut(s) 124, 405, 694, 841, 1008, 1083
MbiI CCGCTC 2 cut(s) 75, 168
MboI GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
MboII GAAGA 7 cut(s) 138, 299, 410, 546, 720, 1122, 1158
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 2 cut(s) 476, 965
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 114, 644
MseI TTAA 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 1032
MspI CCGG 3 cut(s) 48, 61, 163
MspR9I CCNGG 5 cut(s) 61, 133, 163, 909, 1001
MvaI CCWGG 3 cut(s) 133, 909, 1001
MvnI CGCG 3 cut(s) 109, 320, 1032
MwoI GCNNNNNNNGC 7 cut(s) 177, 180, 470, 767, 853, 1164, 1170
NciI CCSGG 2 cut(s) 61, 163
NcoI CCATGG 1 cut(s) 784
NdeII GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
NlaIII CATG 3 cut(s) 341, 487, 788
NlaIV GGNNCC 5 cut(s) 40, 65, 88, 613, 1104
NmuCI GTSAC 2 cut(s) 261, 297
PceI AGGCCT 2 cut(s) 999, 1135
PfeI GAWTC 3 cut(s) 716, 737, 1113
PflFI GACNNNGTC 2 cut(s) 228, 1089
PfoI TCCNGGA 2 cut(s) 161, 907
PkrI GCNGC 6 cut(s) 170, 173, 182, 760, 1031, 1166
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 2 cut(s) 135, 911
Psp5II RGGWCCY 2 cut(s) 135, 911
Psp6I CCWGG 3 cut(s) 131, 907, 999
PspGI CCWGG 3 cut(s) 131, 907, 999
PspN4I GGNNCC 5 cut(s) 40, 65, 88, 613, 1104
PspPI GGNCC 4 cut(s) 63, 135, 911, 1045
PspPPI RGGWCCY 2 cut(s) 135, 911
PstNI CAGNNNCTG 1 cut(s) 464
PsyI GACNNNGTC 2 cut(s) 228, 1089
RsaI GTAC 2 cut(s) 409, 978
RsaNI GTAC 2 cut(s) 408, 977
SacII CCGCGG 1 cut(s) 1033
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 6 cut(s) 169, 172, 181, 759, 1030, 1165
Sau3AI GATC 6 cut(s) 122, 403, 692, 839, 1006, 1081
Sau96I GGNCC 4 cut(s) 63, 135, 911, 1045
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 5 cut(s) 61, 133, 163, 909, 1001
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 4 cut(s) 451, 583, 619, 824
Sfr303I CCGCGG 1 cut(s) 1033
SgrBI CCGCGG 1 cut(s) 1033
SinI GGWCC 4 cut(s) 63, 135, 911, 1045
Sse9I AATT 2 cut(s) 476, 965
SseBI AGGCCT 2 cut(s) 999, 1135
SsiI CCGC 7 cut(s) 73, 168, 266, 781, 845, 1030, 1032
SspI AATATT 1 cut(s) 360
SspMI CTAG 3 cut(s) 932, 1055, 1089
StuI AGGCCT 2 cut(s) 999, 1135
StyD4I CCNGG 5 cut(s) 59, 131, 161, 907, 999
StyI CCWWGG 6 cut(s) 272, 635, 784, 800, 851, 917
TaaI ACNGT 2 cut(s) 412, 938
TaiI ACGT 4 cut(s) 544, 751, 862, 1062
TaqI TCGA 7 cut(s) 121, 501, 517, 706, 1005, 1041, 1084
TaqII GACCGA 2 cut(s) 658, 692
TasI AATT 2 cut(s) 476, 965
TauI GCSGC 2 cut(s) 171, 1032
TfiI GAWTC 3 cut(s) 716, 737, 1113
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 583, 622
TseFI GTSAC 2 cut(s) 261, 297
TseI GCWGC 4 cut(s) 171, 180, 758, 1164
Tsp45I GTSAC 2 cut(s) 261, 297
TspDTI ATGAA 2 cut(s) 281, 354
TspGWI ACGGA 2 cut(s) 31, 147
TspRI CASTG 2 cut(s) 583, 622
Tth111I GACNNNGTC 2 cut(s) 228, 1089
VpaK11BI GGWCC 4 cut(s) 63, 135, 911, 1045
XmiI GTMKAC 1 cut(s) 898
XspI CTAG 3 cut(s) 932, 1055, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.