Rh5CG203700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005340
Physical Location & Seq
Reverse (-)
20513951 .. 20533759
19809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG203700.1

Sequence Viewer

Length: 969 bp
ATGATAGAACCAGTAACAATGACAAATACAGGAATTAAGCTCTTCCTGGCACTCGACGAGGTCGATCTCCTCCACCATCTAAAAGGGCATCTCCACCTCCAAGGCAACTATGGTGAAGTTGTACATGTTGAGCTGGCAATGGATCGTAGTGTTAATCTTCCAAAAGGATATGGATACGTGGAGTTCAAGATGAGAGCAGATGCTGAAAAAGCACTATTACACATGGATGGCGGTCAAATTGATGGTAATGTAGTTCAAGCAAAGTTTACATTATCTCAGCGTCAGAAGTCGCCACCTCCTAAGCCTGTTGTGACTGCTCCAAAGAGAGATACTGTGAAAACTGATGGTATCAATGCTGATAAGGATGGACCAAAGCGTTTGAGGGAAGCTTCTCCTCGTCGGAGACCACCTTCACCACGAAGGAGATCTCCAGTGGCTCGTAGAGGTGGATCTCCAAGAAGACCGCTAGATTCTCCACCACCTCGTCGTCGAGCAGGTTCTCCTTACCGACGTGGTGATACATCTCCAAGAAGGAGGCTTATTTCTCCATCCCGAGGACGTTCTGGGTCTCCGCCACCAAGGCGGCGATCCCCAGTTAGGGCTTCTCCAAGAAGGATACGTGGCAGCCCCCCTGTTCGCAGACGTGGCTCTCCTCCCCCAAGGCGCCGTTCACCTCCTCCTCGACGGGCTCGTAGTCCTCCGAGAAGGTCTCCAATCAGTCGTAGGCGTAGCCGTTCTCCTCCTATTCGTAGGCCTGCTCGGTCACGTTCAAGATCAATTTCACCACGGAGAGGTCGAGGTCCAGCGATGAGACGTGGGAGGTCATCATCATCTTCCTCTGGATCACCTGGTCCACGCAAGGTAGTCCGGAGGATACCATCTCGTAGTCCAAGAAGGCCTGCAAGGGGAAGAACCAGTAGCAGCAACAGCAGCAGAAGCAGTTCACCTCTTCCTCCTCGGAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

322

Amino Acids

35.99

Weight (kDa)

12.0

Isoelectric Point (pI)

131.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 35 - 85 9.7e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 663
AccIII TCCGGA 1 cut(s) 867
AciI CCGC 4 cut(s) 231, 464, 572, 583
AclWI GGATC 4 cut(s) 150, 457, 582, 850
AcyI GRCGYC 1 cut(s) 664
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 5 cut(s) 554, 597, 598, 791, 905
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 3 cut(s) 187, 257, 771
AjiI CACGTC 3 cut(s) 512, 644, 815
AjnI CCWGG 2 cut(s) 45, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 652, 684
AluBI AGCT 3 cut(s) 40, 133, 389
AluI AGCT 3 cut(s) 40, 133, 389
Alw26I GTCTC 4 cut(s) 397, 573, 714, 805
AlwI GGATC 4 cut(s) 150, 457, 582, 850
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 867
AoxI GGCC 2 cut(s) 752, 896
ApeKI GCWGC 3 cut(s) 624, 921, 930
Asp700I GAANNNNTTC 1 cut(s) 940
AspLEI GCGC 1 cut(s) 666
AspS9I GGNCC 3 cut(s) 368, 800, 851
AsuHPI GGTGA 7 cut(s) 125, 405, 527, 663, 774, 837, 936
AvaI CYCGRG 1 cut(s) 552
AvaII GGWCC 3 cut(s) 368, 800, 851
BanI GGYRCC 1 cut(s) 663
BanII GRGCYC 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 3 cut(s) 636, 933, 942
BccI CCATC 7 cut(s) 84, 221, 236, 338, 359, 556, 886
BceAI ACGGC 2 cut(s) 651, 717
BciT130I CCWGG 2 cut(s) 47, 849
BciVI GTATCC 3 cut(s) 167, 609, 867
BcoDI GTCTC 4 cut(s) 397, 573, 714, 805
BfaI CTAG 1 cut(s) 467
BfoI RGCGCY 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 485
BfuI GTATCC 3 cut(s) 167, 609, 867
BglI GCCNNNNNGGC 1 cut(s) 580
BglII AGATCT 1 cut(s) 425
BisI GCNGC 4 cut(s) 584, 625, 922, 931
BlsI GCNGC 4 cut(s) 585, 626, 923, 932
Bme1390I CCNGG 2 cut(s) 47, 849
Bme18I GGWCC 3 cut(s) 368, 800, 851
BmeT110I CYCGRG 1 cut(s) 552
BmgBI CACGTC 3 cut(s) 512, 644, 815
BmgT120I GGNCC 3 cut(s) 368, 800, 851
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 2 cut(s) 47, 849
BmrI ACTGGG 1 cut(s) 587
BmsI GCATC 2 cut(s) 97, 190
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 466
BplI GAGNNNNNCTC 2 cut(s) 694, 726
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 300
BsaAI YACGTR 2 cut(s) 178, 620
BsaHI GRCGYC 1 cut(s) 664
BsaI GGTCTC 3 cut(s) 397, 573, 714
BsaJI CCNNGG 6 cut(s) 100, 553, 578, 659, 785, 956
BsaWI WCCGGW 1 cut(s) 867
Bsc4I CCNNNNNNNGG 5 cut(s) 554, 597, 598, 791, 905
Bse1I ACTGG 4 cut(s) 11, 431, 593, 915
Bse3DI GCAATG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 867
BseBI CCWGG 2 cut(s) 47, 849
BseDI CCNNGG 6 cut(s) 100, 553, 578, 659, 785, 956
BseGI GGATG 3 cut(s) 232, 370, 548
BseLI CCNNNNNNNGG 5 cut(s) 554, 597, 598, 791, 905
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 4 cut(s) 11, 431, 593, 915
BseRI GAGGAG 7 cut(s) 59, 384, 642, 666, 669, 729, 945
BseXI GCAGC 3 cut(s) 636, 933, 942
BshFI GGCC 2 cut(s) 754, 898
BshNI GGYRCC 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 1 cut(s) 868
BslI CCNNNNNNNGG 5 cut(s) 554, 597, 598, 791, 905
BsmAI GTCTC 4 cut(s) 397, 573, 714, 805
BsmBI CGTCTC 1 cut(s) 805
BsnI GGCC 2 cut(s) 754, 898
Bso31I GGTCTC 3 cut(s) 397, 573, 714
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 691
Bsp13I TCCGGA 1 cut(s) 867
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
BspACI CCGC 4 cut(s) 231, 464, 572, 583
BspANI GGCC 2 cut(s) 754, 898
BspCNI CTCAG 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 867
BspLI GGNNCC 1 cut(s) 665
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 4 cut(s) 150, 457, 582, 850
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 663
BspTNI GGTCTC 3 cut(s) 397, 573, 714
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 4 cut(s) 11, 431, 593, 915
BssECI CCNNGG 6 cut(s) 100, 553, 578, 659, 785, 956
BssMI GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
BssNI GRCGYC 1 cut(s) 664
BssT1I CCWWGG 3 cut(s) 100, 578, 659
Bst2UI CCWGG 2 cut(s) 47, 849
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 47, 954
BstACI GRCGYC 1 cut(s) 664
BstAUI TGTACA 1 cut(s) 121
BstBAI YACGTR 2 cut(s) 178, 620
BstC8I GCNNGC 3 cut(s) 135, 756, 900
BstDEI CTNAG 2 cut(s) 276, 300
BstDSI CCRYGG 1 cut(s) 785
BstF5I GGATG 3 cut(s) 232, 370, 548
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 7 cut(s) 67, 145, 428, 452, 590, 776, 845
BstMAI GTCTC 4 cut(s) 397, 573, 714, 805
BstMBI GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
BstMWI GCNNNNNNNGC 6 cut(s) 209, 580, 645, 927, 930, 936
BstNI CCWGG 2 cut(s) 47, 849
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 45, 847
BstV1I GCAGC 3 cut(s) 636, 933, 942
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 2 cut(s) 425, 449
BstYI RGATCY 2 cut(s) 425, 449
BsuI GTATCC 3 cut(s) 167, 609, 867
BsuRI GGCC 2 cut(s) 754, 898
BtgI CCRYGG 1 cut(s) 785
BtgZI GCGATG 1 cut(s) 821
BtrI CACGTC 3 cut(s) 512, 644, 815
BtsCI GGATG 3 cut(s) 232, 370, 548
BtsIMutI CAGTG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 3 cut(s) 135, 756, 900
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 666
Cfr13I GGNCC 3 cut(s) 368, 800, 851
CseI GACGC 1 cut(s) 269
CsiI ACCWGGT 1 cut(s) 847
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 125, 223
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 2 cut(s) 276, 300
DinI GGCGCC 1 cut(s) 665
DpnI GATC 7 cut(s) 66, 144, 427, 451, 589, 775, 844
DpnII GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
Eam1104I CTCTTC 2 cut(s) 47, 954
EarI CTCTTC 2 cut(s) 47, 954
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 3 cut(s) 100, 578, 659
Eco147I AGGCCT 2 cut(s) 754, 898
Eco24I GRGCYC 1 cut(s) 691
Eco31I GGTCTC 3 cut(s) 397, 573, 714
Eco47I GGWCC 3 cut(s) 368, 800, 851
Eco88I CYCGRG 1 cut(s) 552
EcoRII CCWGG 2 cut(s) 45, 847
EcoT14I CCWWGG 3 cut(s) 100, 578, 659
EcoT38I GRGCYC 1 cut(s) 691
EgeI GGCGCC 1 cut(s) 665
EheI GGCGCC 1 cut(s) 665
ErhI CCWWGG 3 cut(s) 100, 578, 659
Esp3I CGTCTC 1 cut(s) 805
FaeI CATG 2 cut(s) 128, 226
FaiI YATR 5 cut(s) 111, 126, 171, 224, 967
FatI CATG 2 cut(s) 124, 222
Fnu4HI GCNGC 4 cut(s) 584, 625, 922, 931
FokI GGATG 3 cut(s) 239, 377, 535
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 4 cut(s) 584, 625, 922, 931
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 665
GluI GCNGC 4 cut(s) 584, 625, 922, 931
GsuI CTGGAG 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 2 cut(s) 754, 898
HapII CCGG 1 cut(s) 868
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 666
Hin1I GRCGYC 1 cut(s) 664
Hin1II CATG 2 cut(s) 128, 226
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 1 cut(s) 470
HpaII CCGG 1 cut(s) 868
HphI GGTGA 7 cut(s) 125, 405, 527, 663, 774, 837, 936
Hpy166II GTNNAC 4 cut(s) 267, 671, 854, 944
Hpy188I TCNGA 4 cut(s) 285, 402, 702, 960
Hpy188III TCNNGA 5 cut(s) 187, 552, 771, 840, 868
Hpy8I GTNNAC 4 cut(s) 267, 671, 854, 944
Hpy99I CGWCG 6 cut(s) 59, 402, 489, 492, 513, 687
HpyAV CCTTC 6 cut(s) 414, 420, 525, 606, 699, 888
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 7 cut(s) 177, 511, 559, 619, 643, 766, 814
HpyCH4V TGCA 1 cut(s) 902
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 580, 645, 927, 930, 936
HpyF3I CTNAG 2 cut(s) 276, 300
HpySE526I ACGT 7 cut(s) 177, 511, 559, 619, 643, 766, 814
Hsp92I GRCGYC 1 cut(s) 664
Hsp92II CATG 2 cut(s) 128, 226
HspAI GCGC 1 cut(s) 664
KasI GGCGCC 1 cut(s) 663
Kpn2I TCCGGA 1 cut(s) 867
Kzo9I GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 3 cut(s) 636, 933, 942
LweI GCATC 2 cut(s) 97, 190
MabI ACCWGGT 1 cut(s) 847
MaeI CTAG 1 cut(s) 467
MaeII ACGT 7 cut(s) 177, 511, 559, 619, 643, 766, 814
MaeIII GTNAC 3 cut(s) 13, 310, 762
MalI GATC 7 cut(s) 66, 144, 427, 451, 589, 775, 844
MboI GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
MboII GAAGA 6 cut(s) 34, 149, 471, 825, 921, 941
MflI RGATCY 2 cut(s) 425, 449
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 3 cut(s) 33, 237, 777
Mly113I GGCGCC 1 cut(s) 664
MmeI TCCRAC 1 cut(s) 380
MroI TCCGGA 1 cut(s) 867
MroXI GAANNNNTTC 1 cut(s) 940
MseI TTAA 2 cut(s) 36, 153
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 868
MspR9I CCNGG 2 cut(s) 47, 849
MvaI CCWGG 2 cut(s) 47, 849
MwoI GCNNNNNNNGC 6 cut(s) 209, 580, 645, 927, 930, 936
NarI GGCGCC 1 cut(s) 664
NdeII GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
NlaIII CATG 2 cut(s) 128, 226
NlaIV GGNNCC 1 cut(s) 665
NmuCI GTSAC 2 cut(s) 310, 762
NspI RCATGY 1 cut(s) 128
PceI AGGCCT 2 cut(s) 754, 898
PciI ACATGT 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 3 cut(s) 60, 688, 793
PdmI GAANNNNTTC 1 cut(s) 940
PfeI GAWTC 1 cut(s) 470
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 4 cut(s) 585, 626, 923, 932
PluTI GGCGCC 1 cut(s) 667
Ppu21I YACGTR 2 cut(s) 178, 620
PscI ACATGT 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 45, 847
PspGI CCWGG 2 cut(s) 45, 847
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 3 cut(s) 368, 800, 851
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 2 cut(s) 425, 449
PsyI GACNNNGTC 1 cut(s) 59
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 36, 153
SatI GCNGC 4 cut(s) 584, 625, 922, 931
Sau3AI GATC 7 cut(s) 64, 142, 425, 449, 587, 773, 842
Sau96I GGNCC 3 cut(s) 368, 800, 851
ScrFI CCNGG 2 cut(s) 47, 849
SduI GDGCHC 1 cut(s) 691
SexAI ACCWGGT 1 cut(s) 847
SfaNI GCATC 2 cut(s) 97, 190
SfoI GGCGCC 1 cut(s) 665
SinI GGWCC 3 cut(s) 368, 800, 851
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 3 cut(s) 33, 237, 777
SseBI AGGCCT 2 cut(s) 754, 898
SsiI CCGC 4 cut(s) 231, 464, 572, 583
SspDI GGCGCC 1 cut(s) 663
SspMI CTAG 1 cut(s) 467
StuI AGGCCT 2 cut(s) 754, 898
StyD4I CCNGG 2 cut(s) 45, 847
StyI CCWWGG 3 cut(s) 100, 578, 659
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 7 cut(s) 180, 514, 562, 622, 646, 769, 817
TaqI TCGA 5 cut(s) 54, 63, 490, 682, 796
TaqII GACCGA 1 cut(s) 750
TasI AATT 3 cut(s) 33, 237, 777
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 36, 153
Tru9I TTAA 2 cut(s) 36, 153
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 2 cut(s) 310, 762
TseI GCWGC 3 cut(s) 624, 921, 930
Tsp45I GTSAC 2 cut(s) 310, 762
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 1 cut(s) 438
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 3 cut(s) 368, 800, 851
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 940
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.