MD10G1202400.v1.1

rnps1,sr45

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
30018146 .. 30024083
5938 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1202400.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGGCGAAGCCAACCCGAGCCCGTCGCTCGCCGTCAGGCTCCGCATCCGGCTCATCCTCCCGCTCCCGCTCGCGTTCCCGCTCCTTCTCAGGCTCCGACTCCCACTCCAGCCCGCTTTCTCGCTCCCGATCTCGCTCCAGGTCCTTCACCTCTTCCTCCTCTCCGTCTCGGAGTGGCAGCTCTCGCAGCCGTAGCCCCCCTGCCTCCAGAAAAAATCCTGAAGTTGCTAAACGAGGTCGTTCTCCACCGCCACAATCTAAAAGGGCATCTCCACCCCCAAGGAAAGCTTCTCCAGTTCATGCAGTTCATGAGTCACTTGTTCTTCACATTGACGCACTAACAAGGAATGTGCATGAAGGCCATTTACGAGAAATATTCTGTAACTTTGGTGAAGTTGTCAATGTGGAGCTGGCAATGGATCGTACTGTTAATCTTCCAAAAGGATTTGGATATGTTGAGTTCAAAATACGAGCAGATGCTGAAAAAGCACAATTATACATGGACGGTGCTCAAATTGATGGTAATGTCGTTCGAGCAAAGTTTACATTACCTCAACGTCAGAAGGTGTCTTCTCCCCCTAAGCCTGTTGCCACTGCTCCAAAGAGAGACACTGTGAAAACTGATGGTGTCAGTGCTGACAAAGATGCACCAAAGCGACCGAGGGAAGCTTCTCCTCGTCGGAGAGGTGCTCTCTCACCACGAAGGAGATCACCTGTATCTCGAAGAGGTGAATCTCTAAGACGAGCATTAGATTCTCCACCGCGTCGTCATGCTGCCTCACCTGCGCGTCCCTACTGCCGTGGTGGTTCACCTCCAAGGAGGAGGCTTGCATCTCCATCCAGAGGTCGTTCTGGATCACCGCCACCAAGGCGACGTTCCCCTATTAGAAGGATACAAGGAAGTCCCATTCGTAGACGCTCTCCAGGACCCCCAAGGCGTGGGTCTTCACCTACTAGACGGTTTCGTAGCCCTCCCAGAAGGTCTCCAATTCGTAGGCGGACCCGTTCTCCCATTCGTAGGCCTGGTCGATCACGTTCAAGGTCAATCTCGCCGCGGAGAGGTCGAGCACCGGCTACTAGACGTGGGAGGTCATCGTCATCTGGATCACCTAGTCCACGACAGGCCTTTGAGGGGAAGAAGCAGTAG

Protein Analysis

382

Amino Acids

42.04

Weight (kDa)

12.0

Isoelectric Point (pI)

137.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 110 - 177 1e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 1 cut(s) 790
AccB7I CCANNNNNTGG 1 cut(s) 938
AccBSI CCGCTC 3 cut(s) 63, 69, 81
AccI GTMKAC 1 cut(s) 913
AccII CGCG 4 cut(s) 73, 763, 787, 1054
AclWI GGATC 3 cut(s) 426, 862, 1111
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 5 cut(s) 842, 938, 1017, 1058, 1131
AgsI TTSAA 2 cut(s) 463, 1038
AjiI CACGTC 1 cut(s) 1082
AjnI CCWGG 3 cut(s) 137, 922, 1021
AjuI GAANNNNNNNTTGG 4 cut(s) 271, 303, 859, 891
AluBI AGCT 4 cut(s) 180, 287, 409, 668
AluI AGCT 4 cut(s) 180, 287, 409, 668
Alw21I GWGCWC 3 cut(s) 511, 691, 1069
Alw26I GTCTC 3 cut(s) 171, 600, 987
AlwI GGATC 3 cut(s) 426, 862, 1111
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 3 cut(s) 358, 1019, 1122
ApeKI GCWGC 3 cut(s) 177, 186, 773
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 3 cut(s) 141, 926, 999
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 3 cut(s) 141, 926, 999
BanII GRGCYC 1 cut(s) 22
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbsI GAAGAC 2 cut(s) 561, 936
Bbv12I GWGCWC 3 cut(s) 511, 691, 1069
BbvI GCAGC 3 cut(s) 189, 198, 760
BccI CCATC 3 cut(s) 512, 617, 844
BceAI ACGGC 3 cut(s) 16, 174, 783
BciT130I CCWGG 3 cut(s) 139, 924, 1023
BciVI GTATCC 1 cut(s) 885
BcoDI GTCTC 3 cut(s) 171, 600, 987
BfaI CTAG 3 cut(s) 954, 1077, 1110
BfuAI ACCTGC 1 cut(s) 790
BfuI GTATCC 1 cut(s) 885
BglI GCCNNNNNGGC 1 cut(s) 868
BisI GCNGC 4 cut(s) 178, 187, 774, 1052
BlsI GCNGC 4 cut(s) 179, 188, 775, 1053
Bme1390I CCNGG 3 cut(s) 139, 924, 1023
Bme18I GGWCC 3 cut(s) 141, 926, 999
BmeT110I CYCGRG 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 1082
BmgT120I GGNCC 3 cut(s) 141, 926, 999
BmiI GGNNCC 4 cut(s) 40, 94, 928, 1001
BmrFI CCNGG 3 cut(s) 139, 924, 1023
BmsI GCATC 5 cut(s) 53, 275, 466, 634, 839
BpiI GAAGAC 2 cut(s) 561, 936
BplI GAGNNNNNCTC 4 cut(s) 673, 705, 675, 707
BpmI CTGGAG 5 cut(s) 91, 121, 190, 276, 906
Bpu10I CCTNAGC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 987
BsaJI CCNNGG 7 cut(s) 278, 659, 799, 815, 866, 932, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 991, 1021
Bsc4I CCNNNNNNNGG 5 cut(s) 842, 938, 1017, 1058, 1131
Bse118I RCCGGY 1 cut(s) 1069
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 3 cut(s) 139, 924, 1023
BseDI CCNNGG 7 cut(s) 278, 659, 799, 815, 866, 932, 1052
BseGI GGATG 3 cut(s) 44, 53, 836
BseLI CCNNNNNNNGG 5 cut(s) 842, 938, 1017, 1058, 1131
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 3 cut(s) 148, 663, 835
BseXI GCAGC 3 cut(s) 189, 198, 760
Bsh1236I CGCG 4 cut(s) 73, 763, 787, 1054
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 3 cut(s) 360, 1021, 1124
BsiEI CGRYCG 1 cut(s) 659
BsiHKAI GWGCWC 3 cut(s) 511, 691, 1069
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 48, 1070
BslFI GGGAC 2 cut(s) 774, 888
BslI CCNNNNNNNGG 5 cut(s) 842, 938, 1017, 1058, 1131
BsmAI GTCTC 3 cut(s) 171, 600, 987
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 774, 888
BsnI GGCC 3 cut(s) 360, 1021, 1124
Bso31I GGTCTC 1 cut(s) 987
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 4 cut(s) 22, 511, 691, 1069
Bsp143I GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
BspANI GGCC 3 cut(s) 360, 1021, 1124
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 4 cut(s) 73, 763, 787, 1054
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 40, 94, 928, 1001
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 3 cut(s) 426, 862, 1111
BspTNI GGTCTC 1 cut(s) 987
BsrBI CCGCTC 3 cut(s) 63, 69, 81
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 1069
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 1069
BssECI CCNNGG 7 cut(s) 278, 659, 799, 815, 866, 932, 1052
BssMI GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
BssT1I CCWWGG 4 cut(s) 278, 815, 866, 932
Bst2UI CCWGG 3 cut(s) 139, 924, 1023
Bst4CI ACNGT 4 cut(s) 427, 506, 613, 960
Bst6I CTCTTC 2 cut(s) 157, 718
BstC8I GCNNGC 5 cut(s) 29, 71, 113, 411, 828
BstDEI CTNAG 3 cut(s) 88, 579, 737
BstDSI CCRYGG 2 cut(s) 799, 1052
BstF5I GGATG 3 cut(s) 44, 53, 836
BstFNI CGCG 4 cut(s) 73, 763, 787, 1054
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 6 cut(s) 131, 421, 710, 857, 1031, 1106
BstMAI GTCTC 3 cut(s) 171, 600, 987
BstMBI GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 6 cut(s) 183, 186, 192, 485, 782, 868
BstNI CCWGG 3 cut(s) 139, 924, 1023
BstSCI CCNGG 3 cut(s) 137, 922, 1021
BstUI CGCG 4 cut(s) 73, 763, 787, 1054
BstV1I GCAGC 3 cut(s) 189, 198, 760
BstV2I GAAGAC 2 cut(s) 561, 936
BsuI GTATCC 1 cut(s) 885
BsuRI GGCC 3 cut(s) 360, 1021, 1124
BtgI CCRYGG 2 cut(s) 799, 1052
BtrI CACGTC 1 cut(s) 1082
BtsCI GGATG 3 cut(s) 44, 53, 836
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 591, 609, 637
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 5 cut(s) 29, 71, 113, 411, 828
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 1069
Cfr13I GGNCC 3 cut(s) 141, 926, 999
Cfr42I CCGCGG 1 cut(s) 1055
CseI GACGC 4 cut(s) 341, 752, 776, 924
Csp6I GTAC 1 cut(s) 423
CviAII CATG 5 cut(s) 299, 308, 353, 499, 770
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 3 cut(s) 88, 579, 737
DpnI GATC 6 cut(s) 130, 420, 709, 856, 1030, 1105
DpnII GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
Eam1104I CTCTTC 2 cut(s) 157, 718
EarI CTCTTC 2 cut(s) 157, 718
EciI GGCGGA 1 cut(s) 1012
Eco130I CCWWGG 4 cut(s) 278, 815, 866, 932
Eco147I AGGCCT 2 cut(s) 1021, 1124
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 987
Eco47I GGWCC 3 cut(s) 141, 926, 999
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 141, 926
EcoRII CCWGG 3 cut(s) 137, 922, 1021
EcoT14I CCWWGG 4 cut(s) 278, 815, 866, 932
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 4 cut(s) 278, 815, 866, 932
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 5 cut(s) 302, 311, 356, 502, 773
FaiI YATR 7 cut(s) 300, 309, 354, 453, 496, 500, 771
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 2 cut(s) 774, 888
FatI CATG 5 cut(s) 298, 307, 352, 498, 769
FauI CCCGC 4 cut(s) 68, 74, 86, 120
FblI GTMKAC 1 cut(s) 913
Fnu4HI GCNGC 4 cut(s) 178, 187, 774, 1052
FokI GGATG 3 cut(s) 31, 40, 823
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 178, 187, 774, 1052
FspBI CTAG 3 cut(s) 954, 1077, 1110
GlaI GCGC 1 cut(s) 786
GluI GCNGC 4 cut(s) 178, 187, 774, 1052
GsuI CTGGAG 5 cut(s) 91, 121, 190, 276, 906
HaeIII GGCC 3 cut(s) 360, 1021, 1124
HapII CCGG 2 cut(s) 48, 1070
HgaI GACGC 4 cut(s) 341, 752, 776, 924
HhaI GCGC 1 cut(s) 787
Hin1II CATG 5 cut(s) 302, 311, 356, 502, 773
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HindIII AAGCTT 2 cut(s) 285, 666
HinfI GANTC 4 cut(s) 98, 311, 731, 752
HpaII CCGG 2 cut(s) 48, 1070
Hpy166II GTNNAC 4 cut(s) 543, 809, 914, 1115
Hpy188I TCNGA 4 cut(s) 97, 171, 561, 681
Hpy188III TCNNGA 8 cut(s) 126, 207, 218, 308, 720, 840, 852, 1101
Hpy8I GTNNAC 4 cut(s) 543, 809, 914, 1115
Hpy99I CGWCG 4 cut(s) 27, 681, 768, 876
HpyAV CCTTC 7 cut(s) 94, 154, 350, 556, 696, 882, 972
HpyCH4III ACNGT 4 cut(s) 427, 506, 613, 960
HpyCH4IV ACGT 4 cut(s) 556, 874, 1033, 1081
HpyCH4V TGCA 4 cut(s) 302, 352, 647, 830
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 186, 192, 485, 782, 868
HpyF3I CTNAG 3 cut(s) 88, 579, 737
HpySE526I ACGT 4 cut(s) 556, 874, 1033, 1081
Hsp92II CATG 5 cut(s) 302, 311, 356, 502, 773
HspAI GCGC 1 cut(s) 785
KspI CCGCGG 1 cut(s) 1055
Kzo9I GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
LmnI GCTCC 8 cut(s) 44, 68, 86, 98, 128, 140, 406, 601
Lsp1109I GCAGC 3 cut(s) 189, 198, 760
LweI GCATC 5 cut(s) 53, 275, 466, 634, 839
MaeI CTAG 3 cut(s) 954, 1077, 1110
MaeII ACGT 4 cut(s) 556, 874, 1033, 1081
MaeIII GTNAC 2 cut(s) 312, 380
MalI GATC 6 cut(s) 130, 420, 709, 856, 1030, 1105
MbiI CCGCTC 3 cut(s) 63, 69, 81
MboI GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
MboII GAAGA 6 cut(s) 144, 314, 425, 561, 735, 936
MhlI GDGCHC 4 cut(s) 22, 511, 691, 1069
MluCI AATT 3 cut(s) 491, 513, 987
MlyI GAGTC 2 cut(s) 92, 320
MmeI TCCRAC 2 cut(s) 120, 659
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 1054
MspI CCGG 2 cut(s) 48, 1070
MspR9I CCNGG 3 cut(s) 139, 924, 1023
MvaI CCWGG 3 cut(s) 139, 924, 1023
MvnI CGCG 4 cut(s) 73, 763, 787, 1054
MwoI GCNNNNNNNGC 6 cut(s) 183, 186, 192, 485, 782, 868
NdeII GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
NlaIII CATG 5 cut(s) 302, 311, 356, 502, 773
NlaIV GGNNCC 4 cut(s) 40, 94, 928, 1001
NmuCI GTSAC 1 cut(s) 312
PagI TCATGA 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 790
PceI AGGCCT 2 cut(s) 1021, 1124
PfeI GAWTC 2 cut(s) 731, 752
PflMI CCANNNNNTGG 1 cut(s) 938
PfoI TCCNGGA 1 cut(s) 922
PkrI GCNGC 4 cut(s) 179, 188, 775, 1053
PleI GAGTC 2 cut(s) 92, 319
PpsI GAGTC 2 cut(s) 92, 319
PpuMI RGGWCCY 2 cut(s) 141, 926
Psp5II RGGWCCY 2 cut(s) 141, 926
Psp6I CCWGG 3 cut(s) 137, 922, 1021
PspGI CCWGG 3 cut(s) 137, 922, 1021
PspN4I GGNNCC 4 cut(s) 40, 94, 928, 1001
PspPI GGNCC 3 cut(s) 141, 926, 999
PspPPI RGGWCCY 2 cut(s) 141, 926
PstNI CAGNNNCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SacII CCGCGG 1 cut(s) 1055
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 4 cut(s) 178, 187, 774, 1052
Sau3AI GATC 6 cut(s) 128, 418, 707, 854, 1028, 1103
Sau96I GGNCC 3 cut(s) 141, 926, 999
SchI GAGTC 2 cut(s) 92, 320
ScrFI CCNGG 3 cut(s) 139, 924, 1023
SduI GDGCHC 4 cut(s) 22, 511, 691, 1069
SfaNI GCATC 5 cut(s) 53, 275, 466, 634, 839
Sfr303I CCGCGG 1 cut(s) 1055
SgrBI CCGCGG 1 cut(s) 1055
SinI GGWCC 3 cut(s) 141, 926, 999
Sse9I AATT 3 cut(s) 491, 513, 987
SseBI AGGCCT 2 cut(s) 1021, 1124
SspI AATATT 1 cut(s) 375
SspMI CTAG 3 cut(s) 954, 1077, 1110
StuI AGGCCT 2 cut(s) 1021, 1124
StyD4I CCNGG 3 cut(s) 137, 922, 1021
StyI CCWWGG 4 cut(s) 278, 815, 866, 932
TaaI ACNGT 4 cut(s) 427, 506, 613, 960
TaiI ACGT 4 cut(s) 559, 877, 1036, 1084
TaqI TCGA 4 cut(s) 532, 721, 1027, 1063
TaqII GACCGA 1 cut(s) 673
TasI AATT 3 cut(s) 491, 513, 987
TauI GCSGC 1 cut(s) 1054
TfiI GAWTC 2 cut(s) 731, 752
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 598, 616, 637
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 3 cut(s) 177, 186, 773
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 287, 296, 369
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 3 cut(s) 598, 616, 637
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 3 cut(s) 141, 926, 999
XmiI GTMKAC 1 cut(s) 913
XspI CTAG 3 cut(s) 954, 1077, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.