pycom10g17320

rnps1,sr45

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
20521358 .. 20526498
5141 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17320.3

Sequence Viewer

Length: 1299 bp
ATGAAAGTAACTAAACCACCTTCACCTTCTCCCTCTCTCTGGACACTTTACCAGCGGGGTTTATCTAGGGTTTCGTCTCTGTCGGCCATGGCGAAGCCAACCCGAGCCCGTCGCTCGCCGTCAGGCTCCGCATCCGGCTCATCCTCCCGCTCCCGCTCGCGTTCCCGCTCCTTCTCCGGCTCCGACTCCCACACCAGCTCGCTTTCTCGCTCTCGTTCTCGCTCCAGGTCCTTCACCTCTTCCTCCTCTCCGTCTCGGAGTGGCAGCTCTCGCAGCCGTAGCCCTGCCTCCAAAAAAAGTCCTGAAGTTGCTAAACGAGGTCGTTCTCCACCACCACAATCTAAAAGGGCGTCTCCACCCCCAAGGAAAGTTTCTCCAGTTCATGCAGTTCATGAGTCACTTGTTCTTCACATTGACGCACTAACAAGGAATGTGCATGAAGGCCATTTACGAGAAATATTCTGTAACTTTGGTGAAGTTGTCAATGTGGAGCTGGCAATGGATCGTACTGTTAATCTTCCAAAAGGATTTGGATATGTTGAGTTCAAAATACGAGCAGATGCTGAAAAAGCACAATTATACATGGACGGCGCTCAAATTGATGGTAATGTCGTTCGAGCAAAGTTTACATTACCTCAACGTCAGAAGGTGTCTTCTCCCCCGAAGCCTGTTGCCACTGCTCCAAAGAGAGACGCTGTGAAAACTGATGGTGTCAGTGCTGACAAAGATGCACCAAAACGACTGAGGGAAGCTTCTCCTCGCCGGAGAGGTGCTCTCTCACCACGAAGGAGATCACCTGTATCTCGAAGAGGTGAATCTCCAAGACGACCATTAGATTCTCCACTGCGTCGTCGTGCTGCCTCACCTGTGCGTCCCTACCGCCGTGGTGGTTCACCTCCAAGGAGGAGGCTTGCATCTCCATCCAGAGGTCGTTCTGGATCACCGCCACCAAGGCGACGTTCCCCTATTAGAAGGATACGAGGAAGTCCCATTCGTAGACGCTCTCCAGGACCCCCGAGGCGCGGTTCACCTACTAGACGGTTTCGTAGCCCACCCAGAAGGTCTCCAATTCGTAGGCGGACCCGTTCTCCTATTCGTAGGCCTGGTCGATCACGTTCAAGGTCAATCTCGCCGCGGAGGGGTCGAGCACCAGCTACTAGACGTGGGAGGTCAACGTCATCTGGATCACCTAGTCCACGAAAGGTACCCCGAAAAATCTCTCGTAGTCCAAGAAGGCCTTTGAGGGGAAGAAGCAGTAGCAAGAGCAGCAGCAGCAGTTCACCTCCTCGTAAGCCATAG

Protein Analysis

433

Amino Acids

47.76

Weight (kDa)

12.0

Isoelectric Point (pI)

136.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1204
AccB1I GGYRCC 1 cut(s) 1204
AccBSI CCGCTC 3 cut(s) 150, 156, 168
AccI GTMKAC 1 cut(s) 997
AccII CGCG 3 cut(s) 160, 1023, 1135
AclWI GGATC 3 cut(s) 510, 946, 1192
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 2 cut(s) 508, 1206
AfiI CCNNNNNNNGG 5 cut(s) 39, 926, 1022, 1139, 1244
AgsI TTSAA 2 cut(s) 547, 1119
AjiI CACGTC 1 cut(s) 1163
AjnI CCWGG 3 cut(s) 224, 1006, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 355, 387, 943, 975
AluBI AGCT 5 cut(s) 198, 267, 493, 752, 1154
AluI AGCT 5 cut(s) 198, 267, 493, 752, 1154
Alw21I GWGCWC 2 cut(s) 775, 1150
Alw26I GTCTC 5 cut(s) 81, 258, 357, 684, 1068
AlwI GGATC 3 cut(s) 510, 946, 1192
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 102, 1015
AoxI GGCC 4 cut(s) 84, 442, 1100, 1235
ApeKI GCWGC 6 cut(s) 264, 273, 857, 1266, 1269, 1272
Asp718I GGTACC 1 cut(s) 1204
AspLEI GCGC 2 cut(s) 593, 1023
AspS9I GGNCC 3 cut(s) 228, 1010, 1080
AvaI CYCGRG 2 cut(s) 102, 1015
AvaII GGWCC 3 cut(s) 228, 1010, 1080
BanI GGYRCC 1 cut(s) 1204
BanII GRGCYC 1 cut(s) 109
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 775, 1150
BbvI GCAGC 6 cut(s) 276, 285, 844, 1278, 1281, 1284
BccI CCATC 3 cut(s) 596, 701, 928
BceAI ACGGC 4 cut(s) 103, 261, 604, 867
BciT130I CCWGG 3 cut(s) 226, 1008, 1104
BciVI GTATCC 1 cut(s) 969
BcoDI GTCTC 5 cut(s) 81, 258, 357, 684, 1068
BfaI CTAG 4 cut(s) 66, 1035, 1158, 1191
BfoI RGCGCY 1 cut(s) 594
BfuI GTATCC 1 cut(s) 969
BglI GCCNNNNNGGC 1 cut(s) 952
BisI GCNGC 7 cut(s) 265, 274, 858, 1133, 1267, 1270, 1273
BlsI GCNGC 7 cut(s) 266, 275, 859, 1134, 1268, 1271, 1274
Bme1390I CCNGG 3 cut(s) 226, 1008, 1104
Bme18I GGWCC 3 cut(s) 228, 1010, 1080
BmeT110I CYCGRG 2 cut(s) 102, 1015
BmgBI CACGTC 1 cut(s) 1163
BmgT120I GGNCC 3 cut(s) 228, 1010, 1080
BmiI GGNNCC 5 cut(s) 127, 181, 1012, 1082, 1206
BmrFI CCNGG 3 cut(s) 226, 1008, 1104
BmsI GCATC 4 cut(s) 140, 550, 718, 923
BpiI GAAGAC 1 cut(s) 645
BplI GAGNNNNNCTC 4 cut(s) 757, 789, 759, 791
BpmI CTGGAG 3 cut(s) 208, 360, 990
BsaHI GRCGYC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 1068
BsaJI CCNNGG 7 cut(s) 87, 362, 883, 899, 950, 1016, 1133
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 926, 1022, 1139, 1244
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 504
BseBI CCWGG 3 cut(s) 226, 1008, 1104
BseDI CCNNGG 7 cut(s) 87, 362, 883, 899, 950, 1016, 1133
BseGI GGATG 3 cut(s) 131, 140, 920
BseLI CCNNNNNNNGG 5 cut(s) 39, 926, 1022, 1139, 1244
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 734
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 4 cut(s) 235, 747, 919, 1275
BseXI GCAGC 6 cut(s) 276, 285, 844, 1278, 1281, 1284
Bsh1236I CGCG 3 cut(s) 160, 1023, 1135
BshFI GGCC 4 cut(s) 86, 444, 1102, 1237
BshNI GGYRCC 1 cut(s) 1204
BsiHKAI GWGCWC 2 cut(s) 775, 1150
BsiHKCI CYCGRG 2 cut(s) 102, 1015
BsiSI CCGG 3 cut(s) 135, 177, 763
BslFI GGGAC 2 cut(s) 858, 972
BslI CCNNNNNNNGG 5 cut(s) 39, 926, 1022, 1139, 1244
BsmAI GTCTC 5 cut(s) 81, 258, 357, 684, 1068
BsmBI CGTCTC 4 cut(s) 81, 258, 357, 684
BsmFI GGGAC 2 cut(s) 858, 972
BsnI GGCC 4 cut(s) 86, 444, 1102, 1237
Bso31I GGTCTC 1 cut(s) 1068
BsoBI CYCGRG 2 cut(s) 102, 1015
Bsp1286I GDGCHC 3 cut(s) 109, 775, 1150
Bsp143I GATC 5 cut(s) 502, 791, 938, 1109, 1184
Bsp19I CCATGG 1 cut(s) 87
BspANI GGCC 4 cut(s) 86, 444, 1102, 1237
BspCNI CTCAG 1 cut(s) 735
BspFNI CGCG 3 cut(s) 160, 1023, 1135
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 5 cut(s) 127, 181, 1012, 1082, 1206
BspPI GGATC 3 cut(s) 510, 946, 1192
BspT107I GGYRCC 1 cut(s) 1204
BspTNI GGTCTC 1 cut(s) 1068
BsrBI CCGCTC 3 cut(s) 150, 156, 168
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 7 cut(s) 87, 362, 883, 899, 950, 1016, 1133
BssMI GATC 5 cut(s) 502, 791, 938, 1109, 1184
BssNI GRCGYC 1 cut(s) 350
BssT1I CCWWGG 4 cut(s) 87, 362, 899, 950
Bst2UI CCWGG 3 cut(s) 226, 1008, 1104
Bst4CI ACNGT 2 cut(s) 511, 1041
Bst6I CTCTTC 2 cut(s) 244, 802
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 5 cut(s) 116, 158, 200, 495, 912
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 3 cut(s) 87, 883, 1133
BstF5I GGATG 3 cut(s) 131, 140, 920
BstFNI CGCG 3 cut(s) 160, 1023, 1135
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 2 cut(s) 593, 1023
BstKTI GATC 5 cut(s) 505, 794, 941, 1112, 1187
BstMAI GTCTC 5 cut(s) 81, 258, 357, 684, 1068
BstMBI GATC 5 cut(s) 502, 791, 938, 1109, 1184
BstMWI GCNNNNNNNGC 7 cut(s) 270, 273, 279, 569, 952, 1266, 1272
BstNI CCWGG 3 cut(s) 226, 1008, 1104
BstSCI CCNGG 3 cut(s) 224, 1006, 1102
BstUI CGCG 3 cut(s) 160, 1023, 1135
BstV1I GCAGC 6 cut(s) 276, 285, 844, 1278, 1281, 1284
BstV2I GAAGAC 1 cut(s) 645
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 4 cut(s) 86, 444, 1102, 1237
BtgI CCRYGG 3 cut(s) 87, 883, 1133
BtrI CACGTC 1 cut(s) 1163
BtsCI GGATG 3 cut(s) 131, 140, 920
BtsI GCAGTG 2 cut(s) 675, 842
BtsIMutI CAGTG 3 cut(s) 675, 721, 842
Cac8I GCNNGC 5 cut(s) 116, 158, 200, 495, 912
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 391
CfoI GCGC 2 cut(s) 593, 1023
Cfr13I GGNCC 3 cut(s) 228, 1010, 1080
Cfr42I CCGCGG 1 cut(s) 1136
CseI GACGC 6 cut(s) 339, 425, 701, 836, 860, 1008
Csp6I GTAC 2 cut(s) 507, 1205
CviAII CATG 5 cut(s) 88, 383, 392, 437, 583
CviQI GTAC 2 cut(s) 507, 1205
DdeI CTNAG 1 cut(s) 743
DpnI GATC 5 cut(s) 504, 793, 940, 1111, 1186
DpnII GATC 5 cut(s) 502, 791, 938, 1109, 1184
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 244, 802
EarI CTCTTC 2 cut(s) 244, 802
EciI GGCGGA 1 cut(s) 1093
Eco130I CCWWGG 4 cut(s) 87, 362, 899, 950
Eco147I AGGCCT 2 cut(s) 1102, 1237
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 1068
Eco47I GGWCC 3 cut(s) 228, 1010, 1080
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 102, 1015
EcoO109I RGGNCCY 2 cut(s) 228, 1010
EcoRII CCWGG 3 cut(s) 224, 1006, 1102
EcoT14I CCWWGG 4 cut(s) 87, 362, 899, 950
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 4 cut(s) 87, 362, 899, 950
Esp3I CGTCTC 4 cut(s) 81, 258, 357, 684
FaeI CATG 5 cut(s) 91, 386, 395, 440, 586
FaiI YATR 8 cut(s) 89, 384, 393, 438, 537, 580, 584, 1297
FalI AAGNNNNNCTT 2 cut(s) 1222, 1254
FaqI GGGAC 2 cut(s) 858, 972
FatI CATG 5 cut(s) 87, 382, 391, 436, 582
FauI CCCGC 4 cut(s) 48, 155, 161, 173
FblI GTMKAC 1 cut(s) 997
Fnu4HI GCNGC 7 cut(s) 265, 274, 858, 1133, 1267, 1270, 1273
FokI GGATG 3 cut(s) 118, 127, 907
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 7 cut(s) 265, 274, 858, 1133, 1267, 1270, 1273
FspBI CTAG 4 cut(s) 66, 1035, 1158, 1191
GlaI GCGC 2 cut(s) 592, 1022
GluI GCNGC 7 cut(s) 265, 274, 858, 1133, 1267, 1270, 1273
GsuI CTGGAG 3 cut(s) 208, 360, 990
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 4 cut(s) 86, 444, 1102, 1237
HapII CCGG 3 cut(s) 135, 177, 763
HgaI GACGC 6 cut(s) 339, 425, 701, 836, 860, 1008
HhaI GCGC 2 cut(s) 593, 1023
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 5 cut(s) 91, 386, 395, 440, 586
Hin6I GCGC 2 cut(s) 591, 1021
HinP1I GCGC 2 cut(s) 591, 1021
HincII GTYRAC 1 cut(s) 1173
HindII GTYRAC 1 cut(s) 1173
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 4 cut(s) 185, 395, 815, 836
HpaII CCGG 3 cut(s) 135, 177, 763
Hpy166II GTNNAC 7 cut(s) 627, 893, 998, 1028, 1173, 1196, 1280
Hpy188I TCNGA 3 cut(s) 184, 258, 645
Hpy188III TCNNGA 7 cut(s) 40, 302, 392, 804, 924, 936, 1182
Hpy8I GTNNAC 7 cut(s) 627, 893, 998, 1028, 1173, 1196, 1280
Hpy99I CGWCG 4 cut(s) 114, 852, 855, 960
HpyCH4III ACNGT 2 cut(s) 511, 1041
HpyCH4IV ACGT 5 cut(s) 640, 958, 1114, 1162, 1175
HpyCH4V TGCA 4 cut(s) 386, 436, 731, 914
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 273, 279, 569, 952, 1266, 1272
HpyF3I CTNAG 1 cut(s) 743
HpySE526I ACGT 5 cut(s) 640, 958, 1114, 1162, 1175
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 5 cut(s) 91, 386, 395, 440, 586
HspAI GCGC 2 cut(s) 591, 1021
KpnI GGTACC 1 cut(s) 1208
KspI CCGCGG 1 cut(s) 1136
Kzo9I GATC 5 cut(s) 502, 791, 938, 1109, 1184
LmnI GCTCC 7 cut(s) 131, 155, 173, 185, 227, 490, 685
Lsp1109I GCAGC 6 cut(s) 276, 285, 844, 1278, 1281, 1284
LweI GCATC 4 cut(s) 140, 550, 718, 923
MaeI CTAG 4 cut(s) 66, 1035, 1158, 1191
MaeII ACGT 5 cut(s) 640, 958, 1114, 1162, 1175
MaeIII GTNAC 3 cut(s) 7, 396, 464
MalI GATC 5 cut(s) 504, 793, 940, 1111, 1186
MbiI CCGCTC 3 cut(s) 150, 156, 168
MboI GATC 5 cut(s) 502, 791, 938, 1109, 1184
MboII GAAGA 6 cut(s) 231, 398, 509, 645, 819, 1260
MhlI GDGCHC 3 cut(s) 109, 775, 1150
MluCI AATT 3 cut(s) 575, 597, 1068
MlyI GAGTC 2 cut(s) 179, 404
MmeI TCCRAC 1 cut(s) 207
MseI TTAA 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 55, 1135
MspI CCGG 3 cut(s) 135, 177, 763
MspR9I CCNGG 3 cut(s) 226, 1008, 1104
MvaI CCWGG 3 cut(s) 226, 1008, 1104
MvnI CGCG 3 cut(s) 160, 1023, 1135
MwoI GCNNNNNNNGC 7 cut(s) 270, 273, 279, 569, 952, 1266, 1272
NcoI CCATGG 1 cut(s) 87
NdeII GATC 5 cut(s) 502, 791, 938, 1109, 1184
NlaIII CATG 5 cut(s) 91, 386, 395, 440, 586
NlaIV GGNNCC 5 cut(s) 127, 181, 1012, 1082, 1206
NmuCI GTSAC 1 cut(s) 396
PagI TCATGA 1 cut(s) 391
PceI AGGCCT 2 cut(s) 1102, 1237
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PfeI GAWTC 2 cut(s) 815, 836
PfoI TCCNGGA 1 cut(s) 1006
PkrI GCNGC 7 cut(s) 266, 275, 859, 1134, 1268, 1271, 1274
PleI GAGTC 2 cut(s) 179, 403
PpsI GAGTC 2 cut(s) 179, 403
PpuMI RGGWCCY 2 cut(s) 228, 1010
Psp5II RGGWCCY 2 cut(s) 228, 1010
Psp6I CCWGG 3 cut(s) 224, 1006, 1102
PspGI CCWGG 3 cut(s) 224, 1006, 1102
PspN4I GGNNCC 5 cut(s) 127, 181, 1012, 1082, 1206
PspPI GGNCC 3 cut(s) 228, 1010, 1080
PspPPI RGGWCCY 2 cut(s) 228, 1010
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 508, 1206
RsaNI GTAC 2 cut(s) 507, 1205
SacII CCGCGG 1 cut(s) 1136
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 7 cut(s) 265, 274, 858, 1133, 1267, 1270, 1273
Sau3AI GATC 5 cut(s) 502, 791, 938, 1109, 1184
Sau96I GGNCC 3 cut(s) 228, 1010, 1080
SchI GAGTC 2 cut(s) 179, 404
ScrFI CCNGG 3 cut(s) 226, 1008, 1104
SduI GDGCHC 3 cut(s) 109, 775, 1150
SfaNI GCATC 4 cut(s) 140, 550, 718, 923
Sfr303I CCGCGG 1 cut(s) 1136
SgrBI CCGCGG 1 cut(s) 1136
SinI GGWCC 3 cut(s) 228, 1010, 1080
Sse9I AATT 3 cut(s) 575, 597, 1068
SseBI AGGCCT 2 cut(s) 1102, 1237
SspI AATATT 1 cut(s) 459
SspMI CTAG 4 cut(s) 66, 1035, 1158, 1191
StuI AGGCCT 2 cut(s) 1102, 1237
StyD4I CCNGG 3 cut(s) 224, 1006, 1102
StyI CCWWGG 4 cut(s) 87, 362, 899, 950
TaaI ACNGT 2 cut(s) 511, 1041
TaiI ACGT 5 cut(s) 643, 961, 1117, 1165, 1178
TaqI TCGA 4 cut(s) 616, 805, 1108, 1144
TasI AATT 3 cut(s) 575, 597, 1068
TauI GCSGC 1 cut(s) 1135
TfiI GAWTC 2 cut(s) 815, 836
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 3 cut(s) 682, 721, 849
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 6 cut(s) 264, 273, 857, 1266, 1269, 1272
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 4 cut(s) 17, 371, 380, 453
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 3 cut(s) 682, 721, 849
VpaK11BI GGWCC 3 cut(s) 228, 1010, 1080
XmiI GTMKAC 1 cut(s) 997
XspI CTAG 4 cut(s) 66, 1035, 1158, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.