Prupe.4G139800_v2.0.a1

rnps1,sr45

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
7802687 .. 7808235
5549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G139800.2

Sequence Viewer

Length: 1200 bp
ATGGCGAAGCCAAGCCGAGCCCGTCGCTCGCCACTTTCAGGCTCCGGTTCTGACTCATCGTCACGCTCCCGCTCGCGTTCGCGCTCCTTCTCAGGCACTGACTCGCGCTCCAGCTCGCATTCTCGCTCTCGATCTCGCTCCAGGTCCTTCTCTTCCTCCTCTCCGTCCCGGAGTGGCAGCTCTCGTAGCCGAAGCCCTCCCTCCAAAAAAAGTCCTGAAGTTGCTAGACGAGGTCGTTCTCCACCACCACAAGCTAAAAAGGCATCTCCACCCCAAAGGAAAGCTTCTCCAATTCGCGAGTCACTTATTCTTCACATTGACCAGCTTACAAGGAATGTGCATGAAGGCCATTTACGAGAAATATTTTGTAACTTTGGTGATGTTGTCAAAGTGGAACTGGCAATGGATCGTGCTGTTAATCTTCCAAAAGGATTTGGATATGTTGAGTTCAAGACGAGAGCAGATGCTGAAAAAGCACAGTTATATATGGATGGCGCTCAAATTGATGGTAATGTAATCCGAGCAAGGTTTACATTACCTCAGCGTCAGAAGGGGTCACCGCCACCTAAGCCTGTTTCCGCTGCTCCAAAGAGAGATGCTGTGAAAACTGATGGTGTCAATGCTGACAAGGATGGACCGAAGCGACCAAGGGAAGCTTCTCCTCGTCGGAGGCCACCTCTCTCACCACGAAGGAGATCCCCTGTAGCTCGCAGAGGTGGATCTCCAAGACGACTGCCAGATTCTCCACCACGTCGTCGTGCTGGCTCTCCTGCTCGTCGTGGTGATACTTCTCCAAGGAGGAGGCTTGCATCTCCATCTAGAGGTCGTTCTGGATCTCCGCCACCAAGGCGACGTTCCCCTGTTAGAAGGATACGTGGCAGTCCCATTCGTAGACGCTCTCCTTTTCCTCCAAGGCGCCGTTCACCTCCTAGACGGGTTCGTAGTCCTCCCAGAAGGTCTCCAATCAATCGTAGGCGTAGCCGGTCTCCTAATCGTAGGCTTGCTCGATCACGATCAAGGTCAATCTCGCCGCGGAGAGGTCGAGGACCAGCTACTAGACGTGGGAGGTCGTCATCATACTCTGGATCACCTAGTCCACGGAAGGTACCCCGAAAGATATCTCGTAGTCCAAGAAGGTCTTTGAGGAGAAGAAGCAGTAGCAAGAGCAGCAGCAGCAGTTCACCTCCTCGTAAGCCATAG

Protein Analysis

400

Amino Acids

44.49

Weight (kDa)

12.0

Isoelectric Point (pI)

152.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1105
AccB1I GGYRCC 2 cut(s) 915, 1105
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 892
AccII CGCG 5 cut(s) 76, 82, 106, 297, 1033
AciI CCGC 6 cut(s) 70, 560, 579, 839, 1031, 1033
AclWI GGATC 5 cut(s) 414, 690, 727, 841, 1093
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 916
AfaI GTAC 1 cut(s) 1107
AfiI CCNNNNNNNGG 3 cut(s) 38, 821, 1037
AgsI TTSAA 1 cut(s) 451
AhdI GACNNNNNGTC 1 cut(s) 58
AjiI CACGTC 2 cut(s) 752, 1061
AjnI CCWGG 1 cut(s) 140
AjuI GAANNNNNNNTTGG 6 cut(s) 640, 672, 838, 870, 904, 936
AluBI AGCT 8 cut(s) 114, 180, 254, 284, 325, 656, 707, 1052
AluI AGCT 8 cut(s) 114, 180, 254, 284, 325, 656, 707, 1052
Alw26I GTCTC 2 cut(s) 963, 990
AlwI GGATC 5 cut(s) 414, 690, 727, 841, 1093
AlwNI CAGNNNCTG 2 cut(s) 98, 467
AoxI GGCC 2 cut(s) 346, 671
ApeKI GCWGC 5 cut(s) 177, 581, 1167, 1170, 1173
Asp718I GGTACC 1 cut(s) 1105
AspLEI GCGC 4 cut(s) 84, 108, 497, 918
AspS9I GGNCC 3 cut(s) 144, 635, 1046
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 7 cut(s) 389, 549, 675, 794, 915, 1080, 1173
AvaII GGWCC 3 cut(s) 144, 635, 1046
BanI GGYRCC 2 cut(s) 915, 1105
BanII GRGCYC 1 cut(s) 22
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 5 cut(s) 189, 568, 1179, 1182, 1185
BccI CCATC 5 cut(s) 485, 500, 605, 626, 823
BceAI ACGGC 1 cut(s) 903
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 864
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 963, 990
BfaI CTAG 5 cut(s) 225, 819, 930, 1056, 1092
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 2 cut(s) 498, 919
BfuI GTATCC 1 cut(s) 864
BglI GCCNNNNNGGC 1 cut(s) 847
BisI GCNGC 6 cut(s) 178, 582, 1031, 1168, 1171, 1174
BlsI GCNGC 6 cut(s) 179, 583, 1032, 1169, 1172, 1175
Bme1390I CCNGG 2 cut(s) 142, 169
Bme18I GGWCC 3 cut(s) 144, 635, 1046
BmeRI GACNNNNNGTC 1 cut(s) 58
BmgBI CACGTC 2 cut(s) 752, 1061
BmgT120I GGNCC 3 cut(s) 144, 635, 1046
BmiI GGNNCC 3 cut(s) 43, 917, 1107
BmrFI CCNGG 2 cut(s) 142, 169
BmsI GCATC 4 cut(s) 272, 454, 586, 818
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpmI CTGGAG 2 cut(s) 94, 124
Bpu10I CCTNAGC 2 cut(s) 540, 567
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 875
BsaBI GATNNNNATC 1 cut(s) 1012
BsaHI GRCGYC 1 cut(s) 916
BsaI GGTCTC 2 cut(s) 963, 990
BsaJI CCNNGG 6 cut(s) 647, 794, 845, 911, 1031, 1097
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 821, 1037
Bse118I RCCGGY 1 cut(s) 981
Bse1I ACTGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 1012
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 6 cut(s) 647, 794, 845, 911, 1031, 1097
BseGI GGATG 2 cut(s) 496, 637
BseJI GATNNNNATC 1 cut(s) 1012
BseLI CCNNNNNNNGG 3 cut(s) 38, 821, 1037
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 105, 554
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 5 cut(s) 148, 651, 814, 1159, 1176
BseXI GCAGC 5 cut(s) 189, 568, 1179, 1182, 1185
Bsh1236I CGCG 5 cut(s) 76, 82, 106, 297, 1033
BshFI GGCC 2 cut(s) 348, 673
BshNI GGYRCC 2 cut(s) 915, 1105
BsiSI CCGG 3 cut(s) 45, 169, 982
BslFI GGGAC 2 cut(s) 151, 867
BslI CCNNNNNNNGG 3 cut(s) 38, 821, 1037
BsmAI GTCTC 2 cut(s) 963, 990
BsmFI GGGAC 2 cut(s) 151, 867
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 348, 673
Bso31I GGTCTC 2 cut(s) 963, 990
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 6 cut(s) 70, 560, 579, 839, 1031, 1033
BspANI GGCC 2 cut(s) 348, 673
BspCNI CTCAG 2 cut(s) 104, 553
BspFNI CGCG 5 cut(s) 76, 82, 106, 297, 1033
BspLI GGNNCC 3 cut(s) 43, 917, 1107
BspPI GGATC 5 cut(s) 414, 690, 727, 841, 1093
BspT107I GGYRCC 2 cut(s) 915, 1105
BspTNI GGTCTC 2 cut(s) 963, 990
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 981
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 981
BssECI CCNNGG 6 cut(s) 647, 794, 845, 911, 1031, 1097
BssMI GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
BssNI GRCGYC 1 cut(s) 916
BssT1I CCWWGG 4 cut(s) 647, 794, 845, 911
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 916
BstBAI YACGTR 1 cut(s) 875
BstC8I GCNNGC 7 cut(s) 29, 74, 116, 709, 763, 807, 1002
BstDEI CTNAG 3 cut(s) 91, 540, 567
BstDSI CCRYGG 2 cut(s) 1031, 1097
BstEII GGTNACC 1 cut(s) 555
BstF5I GGATG 2 cut(s) 496, 637
BstFNI CGCG 5 cut(s) 76, 82, 106, 297, 1033
BstH2I RGCGCY 2 cut(s) 498, 919
BstHHI GCGC 4 cut(s) 84, 108, 497, 918
BstKTI GATC 8 cut(s) 134, 409, 698, 722, 836, 1010, 1016, 1088
BstMAI GTCTC 2 cut(s) 963, 990
BstMBI GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
BstMWI GCNNNNNNNGC 7 cut(s) 186, 260, 473, 568, 847, 1167, 1173
BstNI CCWGG 1 cut(s) 142
BstPI GGTNACC 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 140, 167
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 5 cut(s) 76, 82, 106, 297, 1033
BstV1I GCAGC 5 cut(s) 189, 568, 1179, 1182, 1185
BstX2I RGATCY 3 cut(s) 695, 719, 833
BstYI RGATCY 3 cut(s) 695, 719, 833
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 2 cut(s) 348, 673
BtgI CCRYGG 2 cut(s) 1031, 1097
BtrI CACGTC 2 cut(s) 752, 1061
BtsCI GGATG 2 cut(s) 496, 637
BtsIMutI CAGTG 1 cut(s) 96
BtuMI TCGCGA 1 cut(s) 297
Cac8I GCNNGC 7 cut(s) 29, 74, 116, 709, 763, 807, 1002
CaiI CAGNNNCTG 2 cut(s) 98, 467
CfoI GCGC 4 cut(s) 84, 108, 497, 918
Cfr10I RCCGGY 1 cut(s) 981
Cfr13I GGNCC 3 cut(s) 144, 635, 1046
Cfr42I CCGCGG 1 cut(s) 1034
CseI GACGC 2 cut(s) 533, 903
Csp6I GTAC 1 cut(s) 1106
CviAII CATG 1 cut(s) 341
CviQI GTAC 1 cut(s) 1106
DdeI CTNAG 3 cut(s) 91, 540, 567
DinI GGCGCC 1 cut(s) 917
DpnI GATC 8 cut(s) 133, 408, 697, 721, 835, 1009, 1015, 1087
DpnII GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
DriI GACNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 828
Eco130I CCWWGG 4 cut(s) 647, 794, 845, 911
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 2 cut(s) 963, 990
Eco32I GATATC 1 cut(s) 1119
Eco47I GGWCC 3 cut(s) 144, 635, 1046
Eco57I CTGAAG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 1119
EcoT14I CCWWGG 4 cut(s) 647, 794, 845, 911
EcoT38I GRGCYC 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 917
EheI GGCGCC 1 cut(s) 917
ErhI CCWWGG 4 cut(s) 647, 794, 845, 911
FaeI CATG 1 cut(s) 344
FaiI YATR 7 cut(s) 342, 441, 484, 486, 488, 1078, 1198
FalI AAGNNNNNCTT 6 cut(s) 268, 300, 640, 672, 1123, 1155
FaqI GGGAC 2 cut(s) 151, 867
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 6 cut(s) 178, 582, 1031, 1168, 1171, 1174
FokI GGATG 2 cut(s) 503, 644
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 178, 582, 1031, 1168, 1171, 1174
FspBI CTAG 5 cut(s) 225, 819, 930, 1056, 1092
GlaI GCGC 4 cut(s) 83, 107, 496, 917
GluI GCNGC 6 cut(s) 178, 582, 1031, 1168, 1171, 1174
GsuI CTGGAG 2 cut(s) 94, 124
HaeII RGCGCY 2 cut(s) 498, 919
HaeIII GGCC 2 cut(s) 348, 673
HapII CCGG 3 cut(s) 45, 169, 982
HgaI GACGC 2 cut(s) 533, 903
HhaI GCGC 4 cut(s) 84, 108, 497, 918
Hin1I GRCGYC 1 cut(s) 916
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 82, 106, 495, 916
HinP1I GCGC 4 cut(s) 82, 106, 495, 916
HindIII AAGCTT 2 cut(s) 282, 654
HinfI GANTC 4 cut(s) 53, 101, 299, 740
HpaII CCGG 3 cut(s) 45, 169, 982
HphI GGTGA 7 cut(s) 389, 549, 675, 794, 915, 1080, 1173
Hpy166II GTNNAC 5 cut(s) 531, 893, 923, 1097, 1181
Hpy188I TCNGA 4 cut(s) 52, 521, 549, 669
Hpy188III TCNNGA 8 cut(s) 129, 215, 296, 451, 819, 831, 1011, 1083
Hpy8I GTNNAC 5 cut(s) 531, 893, 923, 1097, 1181
Hpy99I CGWCG 6 cut(s) 27, 669, 756, 759, 780, 855
HpyAV CCTTC 9 cut(s) 97, 157, 338, 544, 684, 861, 948, 1096, 1128
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 4 cut(s) 751, 853, 874, 1060
HpyCH4V TGCA 2 cut(s) 340, 809
HpyF10VI GCNNNNNNNGC 7 cut(s) 186, 260, 473, 568, 847, 1167, 1173
HpyF3I CTNAG 3 cut(s) 91, 540, 567
HpySE526I ACGT 4 cut(s) 751, 853, 874, 1060
Hsp92I GRCGYC 1 cut(s) 916
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 82, 106, 495, 916
KasI GGCGCC 1 cut(s) 915
KpnI GGTACC 1 cut(s) 1109
KspI CCGCGG 1 cut(s) 1034
Kzo9I GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
LmnI GCTCC 6 cut(s) 47, 71, 89, 113, 143, 589
Lsp1109I GCAGC 5 cut(s) 189, 568, 1179, 1182, 1185
LweI GCATC 4 cut(s) 272, 454, 586, 818
MaeI CTAG 5 cut(s) 225, 819, 930, 1056, 1092
MaeII ACGT 4 cut(s) 751, 853, 874, 1060
MaeIII GTNAC 4 cut(s) 60, 300, 368, 555
MalI GATC 8 cut(s) 133, 408, 697, 721, 835, 1009, 1015, 1087
MbiI CCGCTC 1 cut(s) 72
MboI GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
MboII GAAGA 4 cut(s) 144, 302, 413, 1161
MflI RGATCY 3 cut(s) 695, 719, 833
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 2 cut(s) 291, 501
Mly113I GGCGCC 1 cut(s) 916
MlyI GAGTC 3 cut(s) 47, 95, 308
MmeI TCCRAC 1 cut(s) 647
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 581, 1033
MspI CCGG 3 cut(s) 45, 169, 982
MspR9I CCNGG 2 cut(s) 142, 169
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 5 cut(s) 76, 82, 106, 297, 1033
MwoI GCNNNNNNNGC 7 cut(s) 186, 260, 473, 568, 847, 1167, 1173
NarI GGCGCC 1 cut(s) 916
NciI CCSGG 1 cut(s) 169
NdeII GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 3 cut(s) 43, 917, 1107
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 3 cut(s) 60, 300, 555
NruI TCGCGA 1 cut(s) 297
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 740
PflFI GACNNNGTC 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 6 cut(s) 179, 583, 1032, 1169, 1172, 1175
PleI GAGTC 3 cut(s) 47, 95, 307
PluTI GGCGCC 1 cut(s) 919
PpsI GAGTC 3 cut(s) 47, 95, 307
Ppu21I YACGTR 1 cut(s) 875
PpuMI RGGWCCY 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 43, 917, 1107
PspPI GGNCC 3 cut(s) 144, 635, 1046
PspPPI RGGWCCY 1 cut(s) 144
PstNI CAGNNNCTG 2 cut(s) 98, 467
PsuI RGATCY 3 cut(s) 695, 719, 833
PsyI GACNNNGTC 1 cut(s) 231
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 1 cut(s) 1107
RsaNI GTAC 1 cut(s) 1106
SacII CCGCGG 1 cut(s) 1034
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 6 cut(s) 178, 582, 1031, 1168, 1171, 1174
Sau3AI GATC 8 cut(s) 131, 406, 695, 719, 833, 1007, 1013, 1085
Sau96I GGNCC 3 cut(s) 144, 635, 1046
SchI GAGTC 3 cut(s) 47, 95, 308
ScrFI CCNGG 2 cut(s) 142, 169
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 4 cut(s) 272, 454, 586, 818
SfcI CTRYAG 1 cut(s) 702
SfoI GGCGCC 1 cut(s) 917
Sfr303I CCGCGG 1 cut(s) 1034
SgrBI CCGCGG 1 cut(s) 1034
SinI GGWCC 3 cut(s) 144, 635, 1046
Sse9I AATT 2 cut(s) 291, 501
SsiI CCGC 6 cut(s) 70, 560, 579, 839, 1031, 1033
SspDI GGCGCC 1 cut(s) 915
SspI AATATT 1 cut(s) 363
SspMI CTAG 5 cut(s) 225, 819, 930, 1056, 1092
StyD4I CCNGG 2 cut(s) 140, 167
StyI CCWWGG 4 cut(s) 647, 794, 845, 911
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 4 cut(s) 754, 856, 877, 1063
TaqI TCGA 3 cut(s) 130, 1006, 1042
TaqII GACCGA 1 cut(s) 652
TasI AATT 2 cut(s) 291, 501
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 3 cut(s) 60, 300, 555
TseI GCWGC 5 cut(s) 177, 581, 1167, 1170, 1173
Tsp45I GTSAC 3 cut(s) 60, 300, 555
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 2 cut(s) 153, 1114
TspRI CASTG 1 cut(s) 103
Tth111I GACNNNGTC 1 cut(s) 231
VpaK11BI GGWCC 3 cut(s) 144, 635, 1046
XbaI TCTAGA 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 892
XspI CTAG 5 cut(s) 225, 819, 930, 1056, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.