Rorug05G0093900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005340
Physical Location & Seq
Forward (+)
8384554 .. 8384913
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0093900.1

Sequence Viewer

Length: 360 bp
ATGATCTTATGGGCGGTCTGGAAGAACAGGAACTCCACTTTGTGGCAGAACAAACCTCAGACAGCTCAAGACCTCTTACTCGGAAGTTTTGCTTGGCTAGATGATTTTCAAAAGGTGCATTCCGGTAATAAAAAGCCTGCAGCACCGAAGAAGAAAGTTTGGAAGCCTGCCAAGCAAAGTCGACTGACTCTAACTGTAGATGCAGCGTTTCTCCCAAACCAACATCGAGGAGGCATTGGTGGTGTGTTACGTGATGGGAGAGGAAGATTTAAGGCTGCCTTTGTGCGTCCTGTACCTTATACAGCATCACCTAAGCAGTGTGAATTACTTGCCATAAGGGAAGGTCTGGACCTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

10.49

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 66 - 118 4e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 42
AccI GTMKAC 1 cut(s) 181
AciI CCGC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 42
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 140, 203, 275
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 300
AvaII GGWCC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 152, 215, 262
BccI CCATC 1 cut(s) 248
BfaI CTAG 2 cut(s) 98, 358
BfmI CTRYAG 2 cut(s) 138, 195
BisI GCNGC 3 cut(s) 141, 204, 276
BlsI GCNGC 3 cut(s) 142, 205, 277
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmsI GCATC 2 cut(s) 190, 314
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 3 cut(s) 152, 215, 262
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 42
BsmI GAATGC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 142
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 138, 168
BstDEI CTNAG 2 cut(s) 57, 312
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSFI CTRYAG 2 cut(s) 138, 195
BstV1I GCAGC 3 cut(s) 152, 215, 262
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 138, 168
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 293
CviJI RGCY 5 cut(s) 65, 97, 136, 166, 275
CviKI_1 RGCY 5 cut(s) 65, 97, 136, 166, 275
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 57, 312
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 349
FaiI YATR 3 cut(s) 10, 300, 335
FalI AAGNNNNNCTT 4 cut(s) 76, 108, 263, 295
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 141, 204, 276
Fsp4HI GCNGC 3 cut(s) 141, 204, 276
FspBI CTAG 2 cut(s) 98, 358
GluI GCNGC 3 cut(s) 141, 204, 276
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 275
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 60, 83
Hpy188III TCNNGA 3 cut(s) 19, 68, 347
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 3 cut(s) 118, 140, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 57, 312
HpySE526I ACGT 1 cut(s) 250
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 7 cut(s) 4, 13, 136, 150, 180, 303, 332
Lsp1109I GCAGC 3 cut(s) 152, 215, 262
LweI GCATC 2 cut(s) 190, 314
MaeI CTAG 2 cut(s) 98, 358
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 246
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 34, 160, 163, 276
MluCI AATT 1 cut(s) 323
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 5 cut(s) 66, 83, 221, 224, 254
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 1 cut(s) 3
PctI GAATGC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 42
PkrI GCNGC 3 cut(s) 142, 205, 277
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 251
PspPI GGNCC 1 cut(s) 349
PstI CTGCAG 1 cut(s) 142
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SalI GTCGAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 141, 204, 276
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 181
SetI ASST 9 cut(s) 58, 67, 75, 117, 253, 298, 313, 346, 354
SfaNI GCATC 2 cut(s) 190, 314
SfcI CTRYAG 2 cut(s) 138, 195
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 1 cut(s) 323
SsiI CCGC 1 cut(s) 14
SspMI CTAG 2 cut(s) 98, 358
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 181, 226
TasI AATT 1 cut(s) 323
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 323
TseI GCWGC 3 cut(s) 140, 203, 275
TspRI CASTG 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 2 cut(s) 98, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.