Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Forward (+)

29794373 .. 29796114

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTAAGCGAACGGAGCTCCAAGGAGAAGAAGAGAAGCAGAGCTCGGAGCGAAGATTCTTCATCTTCCGATTACGAAGAGAAAGTTAAGAGGCATCGAGGAACAGAGAAAGATGATGAAAGGAGAAGTAGGAGAAGTGATAAGAAGGATAAGAAATCTCACAAGCACCACAAATCCAGTACATCAAAGAAGTCCAAGGATGATAAGCCGAAAAAGAAACATACGGAAAGCGACCACAAGCTAAAAGAGGGAATTCCAGAGCTATCAATGGAAGACTACTTCTCGAAAAACAACGAGTTTGCTACATGGCTGAAAGAAGAAAAACGTACTTACTTTAATGATCTCACGACCGAAGCTGCACGAGGACTGTTCTCACGATTTGTCAAGAGATGGAACAGAGGAAAACTCGAGTCTCGATACTACGAGGGAATCTCCACTGCCCCACGAACAGCTCACGACTGGATGATCAAGCGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

19.09

Weight (kDa)

9.99

Isoelectric Point (pI)

73.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	2 cut(s)	181, 328
AluBI	AGCT	6 cut(s)	18, 44, 241, 262, 356, 452
AluI	AGCT	6 cut(s)	18, 44, 241, 262, 356, 452
Alw21I	GWGCWC	2 cut(s)	20, 46
Alw26I	GTCTC	1 cut(s)	417
Ama87I	CYCGRG	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	20, 46
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	20, 46
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	384
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	4 cut(s)	390, 422, 416, 448
BsaJI	CCNNGG	2 cut(s)	21, 195
Bse1I	ACTGG	2 cut(s)	177, 464
BseDI	CCNNGG	2 cut(s)	21, 195
BseGI	GGATG	2 cut(s)	205, 468
BseNI	ACTGG	2 cut(s)	177, 464
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	20, 46
BsiHKCI	CYCGRG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	20, 46
Bsp143I	GATC	2 cut(s)	340, 465
BsrI	ACTGG	2 cut(s)	177, 464
BssECI	CCNNGG	2 cut(s)	21, 195
BssMI	GATC	2 cut(s)	340, 465
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	21, 195
Bst2BI	CACGAG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	26, 72
BstF5I	GGATG	2 cut(s)	205, 468
BstKTI	GATC	2 cut(s)	343, 468
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	340, 465
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	205, 468
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	180, 327
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	8 cut(s)	18, 44, 208, 241, 262, 310, 356, 452
CviKI_1	RGCY	8 cut(s)	18, 44, 208, 241, 262, 310, 356, 452
CviQI	GTAC	2 cut(s)	180, 327
DpnI	GATC	2 cut(s)	342, 467
DpnII	GATC	2 cut(s)	340, 465
Eam1104I	CTCTTC	2 cut(s)	26, 72
EarI	CTCTTC	2 cut(s)	26, 72
Ecl136II	GAGCTC	2 cut(s)	18, 44
Eco130I	CCWWGG	2 cut(s)	21, 195
Eco24I	GRGCYC	2 cut(s)	20, 46
Eco53kI	GAGCTC	2 cut(s)	18, 44
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	2 cut(s)	18, 44
EcoRI	GAATTC	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	21, 195
EcoT38I	GRGCYC	2 cut(s)	20, 46
ErhI	CCWWGG	2 cut(s)	21, 195
FaeI	CATG	1 cut(s)	309
FaiI	YATR	2 cut(s)	222, 307
FatI	CATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	2 cut(s)	212, 475
FriOI	GRGCYC	2 cut(s)	20, 46
Fsp4HI	GCNGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	357
Hin1II	CATG	1 cut(s)	309
HinfI	GANTC	3 cut(s)	56, 410, 429
Hpy188I	TCNGA	2 cut(s)	48, 70
Hpy188III	TCNNGA	7 cut(s)	257, 283, 346, 375, 385, 414, 455
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	340, 465
LmnI	GCTCC	3 cut(s)	15, 23, 48
LpnPI	CCDG	3 cut(s)	190, 270, 445
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	325
MalI	GATC	2 cut(s)	342, 467
MboI	GATC	2 cut(s)	340, 465
MboII	GAAGA	8 cut(s)	40, 43, 51, 57, 65, 89, 284, 329
MhlI	GDGCHC	2 cut(s)	20, 46
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	84, 92, 241, 356, 392, 418
MseI	TTAA	2 cut(s)	87, 336
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	2 cut(s)	340, 465
NlaIII	CATG	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	56, 429
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp124BI	GAGCTC	2 cut(s)	20, 46
PspXI	VCTCGAGB	1 cut(s)	407
RsaI	GTAC	2 cut(s)	181, 328
RsaNI	GTAC	2 cut(s)	180, 327
SacI	GAGCTC	2 cut(s)	20, 46
SaqAI	TTAA	2 cut(s)	87, 336
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	2 cut(s)	340, 465
SchI	GAGTC	1 cut(s)	419
SduI	GDGCHC	2 cut(s)	20, 46
SetI	ASST	8 cut(s)	20, 46, 243, 264, 328, 358, 454, 479
SfaNI	GCATC	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	252
SstI	GAGCTC	2 cut(s)	20, 46
StyI	CCWWGG	2 cut(s)	21, 195
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	4 cut(s)	97, 284, 408, 415
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	1 cut(s)	252
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	56, 429
Tru1I	TTAA	2 cut(s)	87, 336
Tru9I	TTAA	2 cut(s)	87, 336
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	51, 132
TspGWI	ACGGA	2 cut(s)	28, 239
TspRI	CASTG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.