Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018566.1

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Forward (+)

5383 .. 7661

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018566.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgggaagcgacaggaaaccggaggagaagaagaagagtaggaaaaggagctcttcttcacctgcacaagatgaggggaaaggtaagaggcacagaacagtagaagatgaggagagaaagagccgaaagagtgacaagaaggacaagaagagatctcataagcactctgataaagaaaagaagacaaaggataagcatagaagtaaacatcaccgcttgaacattgagatccaagaactgtccggtgatgactatttctctaagaacaatgagttctccacttggctgaaagaagagaaagaggtgttcttctctgatctttctgcagaatctgcacggcaactgttttcagactttgtgaaagcttggaacaagaaaaagcttgaatccagatactacgaggggattgaaactgcaccccggtctgctcataattggaaaatcaaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.84

Weight (kDa)

9.83

Isoelectric Point (pI)

62.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	220, 386, 410
AluBI	AGCT	3 cut(s)	51, 365, 382
AluI	AGCT	3 cut(s)	51, 365, 382
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	3 cut(s)	51, 203, 257
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	2 cut(s)	19, 242
BseDI	CCNNGG	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	38, 125
BsgI	GTGCAG	3 cut(s)	48, 318, 399
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	20, 243, 421
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	152, 228, 316
BspACI	CCGC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	152, 228, 316
Bst4CI	ACNGT	3 cut(s)	100, 240, 345
Bst6I	CTCTTC	4 cut(s)	29, 58, 143, 288
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	261
BstKTI	GATC	3 cut(s)	155, 231, 319
BstMBI	GATC	3 cut(s)	152, 228, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	2 cut(s)	152, 228
BstYI	RGATCY	2 cut(s)	152, 228
BveI	ACCTGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	332
CviJI	RGCY	5 cut(s)	51, 123, 286, 365, 382
CviKI_1	RGCY	5 cut(s)	51, 123, 286, 365, 382
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	154, 230, 318
DpnII	GATC	3 cut(s)	152, 228, 316
Eam1104I	CTCTTC	4 cut(s)	29, 58, 143, 288
EarI	CTCTTC	4 cut(s)	29, 58, 143, 288
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	53
FaiI	YATR	3 cut(s)	159, 198, 432
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FriOI	GRGCYC	1 cut(s)	53
HapII	CCGG	3 cut(s)	20, 243, 421
HindIII	AAGCTT	2 cut(s)	363, 380
HinfI	GANTC	2 cut(s)	329, 386
HpaII	CCGG	3 cut(s)	20, 243, 421
HphI	GGTGA	3 cut(s)	51, 203, 257
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	169, 316, 352
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	100, 240, 345
HpyCH4V	TGCA	4 cut(s)	65, 326, 335, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	152, 228, 316
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	5 cut(s)	33, 75, 256, 403, 434
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	154, 230, 318
MboI	GATC	3 cut(s)	152, 228, 316
MflI	RGATCY	2 cut(s)	152, 228
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	433
MnlI	CCTC	6 cut(s)	16, 67, 81, 103, 295, 394
MspI	CCGG	3 cut(s)	20, 243, 421
MspR9I	CCNGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	3 cut(s)	152, 228, 316
NmuCI	GTSAC	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	329, 386
Psp124BI	GAGCTC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	152, 228
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	58
Sau3AI	GATC	3 cut(s)	152, 228, 316
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	53, 64, 85, 306, 367, 384
SfcI	CTRYAG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	3 cut(s)	100, 240, 345
TasI	AATT	1 cut(s)	433
TfiI	GAWTC	2 cut(s)	329, 386
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.