RchiOBHm_Chr5g0025651

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
19554881 .. 19557517
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30528

Sequence Viewer

Length: 453 bp
ATGGGAAGCGACAGGAAACCGGAGGAGAAGAAGAAGAGTAGGAAAAGGAGCTCTTCTTCACCTGCACAAGATGAGGGGAAAGGTAAGAGGCATAGAACAGTAGAAGATGAGGATAGAAAGAGCCGAAAGAGTGACAAGAAGGACAAGAAAAGATCACATAAGCATTCTGATAAAGAAAAGAAGACAAAGGATAAGCATAGAAGTAAACATCGCCACTTGAACATTGAGATCCAAGAACTGTCCGGTGATGACTATTTCTCTAAGAACAATGAGTTCTCCACATGGCTGAAAGAAGAGAAAGATGTGTTCTTCTCTGATCTTTCTGCAGAATCTGCACGGCAACTGTTTTCAGACTTTGTGAAAGCTTGGAACAAGAAAAAGCTTGAATCCAGATACTACGAGGGGATTGAAACTGCACCCCGGTCTGCTCATAATTGGAAAATCAAAGGGTGA

Protein Analysis

150

Amino Acids

17.81

Weight (kDa)

9.83

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 223
AgsI TTSAA 3 cut(s) 220, 386, 410
AluBI AGCT 3 cut(s) 51, 365, 382
AluI AGCT 3 cut(s) 51, 365, 382
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 51, 257
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 353
BcnI CCSGG 1 cut(s) 421
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 2 cut(s) 19, 242
BseDI CCNNGG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 38
BsgI GTGCAG 3 cut(s) 48, 318, 399
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 20, 243, 421
BsmI GAATGC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 152, 228, 316
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 3 cut(s) 152, 228, 316
Bst4CI ACNGT 3 cut(s) 100, 240, 345
Bst6I CTCTTC 3 cut(s) 29, 58, 288
BstAPI GCANNNNNTGC 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 261
BstKTI GATC 3 cut(s) 155, 231, 319
BstMBI GATC 3 cut(s) 152, 228, 316
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 194
BveI ACCTGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 332
CviAII CATG 1 cut(s) 282
CviJI RGCY 5 cut(s) 51, 123, 286, 365, 382
CviKI_1 RGCY 5 cut(s) 51, 123, 286, 365, 382
DdeI CTNAG 1 cut(s) 261
DpnI GATC 3 cut(s) 154, 230, 318
DpnII GATC 3 cut(s) 152, 228, 316
Eam1104I CTCTTC 3 cut(s) 29, 58, 288
EarI CTCTTC 3 cut(s) 29, 58, 288
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 285
FaiI YATR 5 cut(s) 93, 159, 198, 283, 432
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 53
HapII CCGG 3 cut(s) 20, 243, 421
Hin1II CATG 1 cut(s) 285
HindIII AAGCTT 2 cut(s) 363, 380
HinfI GANTC 2 cut(s) 329, 386
HpaII CCGG 3 cut(s) 20, 243, 421
HphI GGTGA 2 cut(s) 51, 257
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 169, 316, 352
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 100, 240, 345
HpyCH4V TGCA 4 cut(s) 65, 326, 335, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 1 cut(s) 285
Kzo9I GATC 3 cut(s) 152, 228, 316
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 5 cut(s) 33, 75, 256, 403, 434
MaeIII GTNAC 1 cut(s) 131
MalI GATC 3 cut(s) 154, 230, 318
MboI GATC 3 cut(s) 152, 228, 316
MboII GAAGA 9 cut(s) 40, 43, 45, 46, 48, 116, 193, 301, 305
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 433
MnlI CCTC 5 cut(s) 16, 67, 81, 103, 394
MspI CCGG 3 cut(s) 20, 243, 421
MspR9I CCNGG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 421
NdeII GATC 3 cut(s) 152, 228, 316
NlaIII CATG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 58
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 329, 386
Psp124BI GAGCTC 1 cut(s) 53
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 228
SacI GAGCTC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 58
Sau3AI GATC 3 cut(s) 152, 228, 316
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 53
SetI ASST 5 cut(s) 53, 64, 85, 367, 384
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 1 cut(s) 433
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 419
TaaI ACNGT 3 cut(s) 100, 240, 345
TasI AATT 1 cut(s) 433
TfiI GAWTC 2 cut(s) 329, 386
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.