Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Reverse (-)

75588443 .. 75590869

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGAAGCGACAGGAAACCGGAGGAGGAGAAGAAGAAGAGTAGGAAAAGGAGCTCTTCTTCACCTGCACAAGATGAGGGGAAAGGAAAGAGCCATAGAACAGTAGAGGATGAGGATAGAAAGAGCAGAAAGAGTGACAAGAAGGACAAGAAAAGATCACATAAGCATTCTGATAAAGAAAAGAAGACAAAGACAAAGGATAAGCATAAAAGTAAACATCGCCGCTTGAACATTGAGATCCAAGAACTGTCCGGTGATGACTATTTCTCTAAGAACAATGAGTTCTCCACATGGCTGAAAGAAGAGAAAGATATGTTCTTCTCTGATCTTTCTGCAGAATCTGCACGGCAACTGTTTTCAGACTTTGTGAAAGCTTGGAACAAGAAAAAGCTTGAATCCAGATACTACGAGGGGATTGAAACTGCACCCCGGTCTGCTCATAATTGGAAAATCAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

18.12

Weight (kDa)

9.79

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	229, 395, 419
AluBI	AGCT	3 cut(s)	54, 374, 391
AluI	AGCT	3 cut(s)	54, 374, 391
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	54, 266
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	430
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	2 cut(s)	19, 251
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	115
BseRI	GAGGAG	2 cut(s)	38, 41
BsgI	GTGCAG	3 cut(s)	51, 327, 408
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	20, 252, 430
BsmI	GAATGC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	155, 237, 325
BspACI	CCGC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	3 cut(s)	155, 237, 325
Bst4CI	ACNGT	3 cut(s)	103, 249, 354
Bst6I	CTCTTC	3 cut(s)	32, 61, 297
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	158, 240, 328
BstMBI	GATC	3 cut(s)	155, 237, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	73
CaiI	CAGNNNCTG	1 cut(s)	341
CviAII	CATG	1 cut(s)	291
CviJI	RGCY	5 cut(s)	54, 93, 295, 374, 391
CviKI_1	RGCY	5 cut(s)	54, 93, 295, 374, 391
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	157, 239, 327
DpnII	GATC	3 cut(s)	155, 237, 325
Eam1104I	CTCTTC	3 cut(s)	32, 61, 297
EarI	CTCTTC	3 cut(s)	32, 61, 297
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	1 cut(s)	294
FaiI	YATR	6 cut(s)	96, 162, 207, 292, 314, 441
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
HapII	CCGG	3 cut(s)	20, 252, 430
Hin1II	CATG	1 cut(s)	294
HindIII	AAGCTT	2 cut(s)	372, 389
HinfI	GANTC	2 cut(s)	338, 395
HpaII	CCGG	3 cut(s)	20, 252, 430
HphI	GGTGA	2 cut(s)	54, 266
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	172, 325, 361
Hpy188III	TCNNGA	1 cut(s)	399
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	103, 249, 354
HpyCH4V	TGCA	4 cut(s)	68, 335, 344, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	155, 237, 325
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	33, 78, 265, 412, 443
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	157, 239, 327
MboI	GATC	3 cut(s)	155, 237, 325
MboII	GAAGA	8 cut(s)	43, 46, 48, 49, 51, 196, 310, 314
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	442
MnlI	CCTC	6 cut(s)	16, 19, 70, 100, 106, 403
MspI	CCGG	3 cut(s)	20, 252, 430
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	3 cut(s)	155, 237, 325
NlaIII	CATG	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	338, 395
PkrI	GCNGC	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	61
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	3 cut(s)	155, 237, 325
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	56, 67, 376, 393
SfcI	CTRYAG	1 cut(s)	333
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	223
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	103, 249, 354
TasI	AATT	1 cut(s)	442
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	338, 395
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.