Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Forward (+)

20847839 .. 20849911

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAAGCGACCGGAAATCCGAGGAGAAGAAGAAGAGTAGGAAAAGGAGCACCTCTTCATCTTCCGAAGATGAGGGAAAAGGCAAGAGGCAGAGAACAGTAGAGGATGAGGACAGGAAGAGCAGAAGGAGTGACAAGAAGGACAAGAAAAGGTCGCATAAGCACTCAAAACGCCGTTCCGCTAAAGAAAAGAAGACAAAGGATAAGCACAAAAGTAGACATCACAAAGGCGATCGCCTCTCGAAAATTGACTTCCAGGAGCTGTCCACCGATGACTATTTCTTAAAGAACAATGAGTTCTCTATGTGGCTGAAAGAAGAGAAAGATGTGTTCTTCTCCGATCTTTCATCAGAGTCCGCACGCCAACTATTTGCAGACTTTGTGAAAGTTTGGAACAAACAAAAACTCGAATCCAAGTACTACGAGGGGATCGCAAGTGGGCCCCGGTGTGCCCATGCGTGGAAAATTAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.73

Weight (kDa)

9.95

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	2 cut(s)	180, 357
AclWI	GGATC	1 cut(s)	437
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	440
ApaI	GGGCCC	1 cut(s)	444
AsiSI	GCGATCGC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	440, 441
AsuC2I	CCSGG	1 cut(s)	445
BaeGI	GKGCMC	2 cut(s)	444, 454
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	257, 445
BmgT120I	GGNCC	2 cut(s)	440, 441
BmiI	GGNNCC	2 cut(s)	442, 443
BmrFI	CCNGG	2 cut(s)	257, 445
BpiI	GAAGAC	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	21, 443
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	21, 443
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	2 cut(s)	444, 454
Bsh1285I	CGRYCG	2 cut(s)	13, 235
BshFI	GGCC	1 cut(s)	442
BsiEI	CGRYCG	2 cut(s)	13, 235
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	13, 445
BslI	CCNNNNNNNGG	1 cut(s)	459
BsnI	GGCC	1 cut(s)	442
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	53, 444, 454
Bsp143I	GATC	3 cut(s)	232, 340, 429
BspACI	CCGC	2 cut(s)	180, 357
BspANI	GGCC	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	442, 443
BspPI	GGATC	1 cut(s)	437
BspQI	GCTCTTC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	21, 443
BssMI	GATC	3 cut(s)	232, 340, 429
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	4 cut(s)	29, 61, 113, 312
BstC8I	GCNNGC	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	235, 343, 432
BstMBI	GATC	3 cut(s)	232, 340, 429
BstMCI	CGRYCG	2 cut(s)	13, 235
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	255, 443
BstSLI	GKGCMC	2 cut(s)	444, 454
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	440, 441
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	455
CviJI	RGCY	3 cut(s)	262, 310, 442
CviKI_1	RGCY	3 cut(s)	262, 310, 442
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	3 cut(s)	234, 342, 431
DpnII	GATC	3 cut(s)	232, 340, 429
Eam1104I	CTCTTC	4 cut(s)	29, 61, 113, 312
EarI	CTCTTC	4 cut(s)	29, 61, 113, 312
Eco24I	GRGCYC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	1 cut(s)	458
FaiI	YATR	3 cut(s)	159, 305, 456
FatI	CATG	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	217
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	13, 445
Hin1II	CATG	1 cut(s)	458
HinfI	GANTC	2 cut(s)	353, 410
HpaII	CCGG	2 cut(s)	13, 445
Hpy166II	GTNNAC	2 cut(s)	218, 267
Hpy188I	TCNGA	4 cut(s)	22, 67, 340, 352
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	218, 267
HpyAV	CCTTC	2 cut(s)	120, 133
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	232, 340, 429
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	48, 259
LpnPI	CCDG	5 cut(s)	26, 100, 242, 269, 458
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	234, 342, 431
MboI	GATC	3 cut(s)	232, 340, 429
MhlI	GDGCHC	3 cut(s)	53, 444, 454
MluCI	AATT	2 cut(s)	246, 465
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	8 cut(s)	16, 64, 67, 81, 97, 103, 248, 418
MseI	TTAA	2 cut(s)	284, 468
MspI	CCGG	2 cut(s)	13, 445
MspR9I	CCNGG	2 cut(s)	257, 445
MvaI	CCWGG	1 cut(s)	257
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	3 cut(s)	232, 340, 429
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	2 cut(s)	442, 443
NmuCI	GTSAC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	255
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	442, 443
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	2 cut(s)	440, 441
PstNI	CAGNNNCTG	1 cut(s)	262
PvuI	CGATCG	1 cut(s)	235
RgaI	GCGATCGC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	284, 468
Sau3AI	GATC	3 cut(s)	232, 340, 429
Sau96I	GGNCC	2 cut(s)	440, 441
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	257, 445
SduI	GDGCHC	3 cut(s)	53, 444, 454
SetI	ASST	3 cut(s)	56, 155, 264
SfaAI	GCGATCGC	1 cut(s)	235
SgfI	GCGATCGC	1 cut(s)	235
Sse9I	AATT	2 cut(s)	246, 465
SsiI	CCGC	2 cut(s)	180, 357
StyD4I	CCNGG	2 cut(s)	255, 443
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	242, 408
TasI	AATT	2 cut(s)	246, 465
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	284, 468
Tru9I	TTAA	2 cut(s)	284, 468
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	48, 336
XmiI	GTMKAC	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.