Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Forward (+)

35717467 .. 35725823

Gene Structure 8357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1224500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGAAGCGACCGGAAATCCGAGGAGAAGAAGAAGAGTAGGAAAAGGAGCCCCTCTTCATCTTCCGAAGATGAGGGAAGAGGCAAGAGGCAGAGAACAGGAGAAGATGAGGACAAGAAGAGCAGGAGGAGTGATAAAAAGGACAAGTCAAAGGACAAGAAAAAATCTCATAAGCACCCAAAACACCGTTCCGATAAGGAAAAGAAGACAAAAGATAAGCACAAAAGTAAACACCACAAAGGCGATCGCCTCTCGAAAATTGACTTCCAAGAGCTGTCGAATGATGACTATTTCCTCAAGAACAATGAGTTCTCTACGTGGCTGAAAGAAGAGAAAGATGTGTTCTTCTCCGATCTTTCATCAGAGTCCGCACGCCAACTATTTGCAGACTTCGTGAAAGTTTGGAACAAACAAAAACTTGAATCCAAGTACTACGAGGGGATCGCAAGTGGGCCCCGGTGTGCCCATGCGTGGAAAATTAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

19.11

Weight (kDa)

9.82

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	422
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	452
ApaI	GGGCCC	1 cut(s)	456
AsiSI	GCGATCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	452, 453
AsuC2I	CCSGG	1 cut(s)	457
BaeGI	GKGCMC	2 cut(s)	456, 466
BanII	GRGCYC	2 cut(s)	53, 456
BbsI	GAAGAC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	457
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	452, 453
BmiI	GGNNCC	3 cut(s)	50, 454, 455
BmrFI	CCNGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	21, 455
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	21, 455
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseRI	GAGGAG	2 cut(s)	38, 142
BseSI	GKGCMC	2 cut(s)	456, 466
Bsh1285I	CGRYCG	2 cut(s)	13, 247
BshFI	GGCC	1 cut(s)	454
BsiEI	CGRYCG	2 cut(s)	13, 247
BsiSI	CCGG	2 cut(s)	13, 457
BslI	CCNNNNNNNGG	1 cut(s)	471
BsnI	GGCC	1 cut(s)	454
Bsp120I	GGGCCC	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	53, 456, 466
Bsp143I	GATC	3 cut(s)	244, 352, 441
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	50, 454, 455
BspPI	GGATC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	21, 455
BssMI	GATC	3 cut(s)	244, 352, 441
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	5 cut(s)	29, 61, 73, 113, 324
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	373
BstKTI	GATC	3 cut(s)	247, 355, 444
BstMBI	GATC	3 cut(s)	244, 352, 441
BstMCI	CGRYCG	2 cut(s)	13, 247
BstSCI	CCNGG	1 cut(s)	455
BstSLI	GKGCMC	2 cut(s)	456, 466
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	452, 453
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	4 cut(s)	51, 274, 322, 454
CviKI_1	RGCY	4 cut(s)	51, 274, 322, 454
CviQI	GTAC	1 cut(s)	430
DpnI	GATC	3 cut(s)	246, 354, 443
DpnII	GATC	3 cut(s)	244, 352, 441
Eam1104I	CTCTTC	5 cut(s)	29, 61, 73, 113, 324
EarI	CTCTTC	5 cut(s)	29, 61, 73, 113, 324
Eco24I	GRGCYC	2 cut(s)	53, 456
EcoO109I	RGGNCCY	1 cut(s)	453
EcoT38I	GRGCYC	2 cut(s)	53, 456
FaeI	CATG	1 cut(s)	470
FaiI	YATR	2 cut(s)	171, 468
FatI	CATG	1 cut(s)	466
FriOI	GRGCYC	2 cut(s)	53, 456
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	2 cut(s)	13, 457
Hin1II	CATG	1 cut(s)	470
HinfI	GANTC	2 cut(s)	365, 422
HpaII	CCGG	2 cut(s)	13, 457
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	5 cut(s)	22, 67, 193, 352, 364
Hpy188III	TCNNGA	3 cut(s)	253, 298, 394
Hpy8I	GTNNAC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	470
Kzo9I	GATC	3 cut(s)	244, 352, 441
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	4 cut(s)	26, 84, 109, 470
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	246, 354, 443
MboI	GATC	3 cut(s)	244, 352, 441
MhlI	GDGCHC	3 cut(s)	53, 456, 466
MluCI	AATT	2 cut(s)	258, 477
MlyI	GAGTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	480
MspI	CCGG	2 cut(s)	13, 457
MspR9I	CCNGG	1 cut(s)	457
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	244, 352, 441
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	3 cut(s)	50, 454, 455
PciSI	GCTCTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	422
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	50, 454, 455
PspOMI	GGGCCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	452, 453
PvuI	CGATCG	1 cut(s)	247
RgaI	GCGATCGC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	480
Sau3AI	GATC	3 cut(s)	244, 352, 441
Sau96I	GGNCC	2 cut(s)	452, 453
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	3 cut(s)	53, 456, 466
SetI	ASST	2 cut(s)	276, 320
SfaAI	GCGATCGC	1 cut(s)	247
SgfI	GCGATCGC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	258, 477
SsiI	CCGC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	254, 278
TasI	AATT	2 cut(s)	258, 477
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TspDTI	ATGAA	2 cut(s)	48, 348
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.