Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Forward (+)

74469861 .. 74472436

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGAAGCGACAGGAAACCGGAGGAGGAGAAGAAGAAGAGTAGGAAAAGGAGCTCTTCTTCACCTGCACAAGATGAGGGGAAAGGTAAGAGGCATAGAACAGTAGAGGATGAGGATAGAAAGAGCAGAAAGAGTGACAAGAAGGACAAGAAAAGATCGCATAAGCATTCTGATAAAGAAAAGAAGACAAAGGATAAGCATAGAAGTAAACATCGCCGCTTGAACATTGAGATCCAAGAACTGTCCAGTGATGACTATTTCTCTAAGAACAATGAGTTCTCCACATGGCTGAAAGAAGAGAAAGATGTGTTCTTCTCTGATCTTTCTGCAGAATCTGCACGGCAATTGTTTTCAGACTTTGTGAAAGCTTGGAACAAGAAAAGCTTGAATCCAGATACTACGAGGGGATTGAAACTGCACCCCGGTCTGCTCATAATTGGAAAATCAAAGGGTGAAAAGCAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

18.18

Weight (kDa)

9.91

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	223, 388, 412
AluBI	AGCT	3 cut(s)	54, 368, 384
AluI	AGCT	3 cut(s)	54, 368, 384
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	54, 464
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	38, 41
BsgI	GTGCAG	3 cut(s)	51, 321, 401
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	20, 423
BsmI	GAATGC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	155, 231, 319
BspACI	CCGC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	155, 231, 319
Bst4CI	ACNGT	3 cut(s)	103, 243, 465
Bst6I	CTCTTC	3 cut(s)	32, 61, 291
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	158, 234, 322
BstMBI	GATC	3 cut(s)	155, 231, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	73
CaiI	CAGNNNCTG	1 cut(s)	335
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	4 cut(s)	54, 289, 368, 384
CviKI_1	RGCY	4 cut(s)	54, 289, 368, 384
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	157, 233, 321
DpnII	GATC	3 cut(s)	155, 231, 319
Eam1104I	CTCTTC	3 cut(s)	32, 61, 291
EarI	CTCTTC	3 cut(s)	32, 61, 291
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	1 cut(s)	288
FaiI	YATR	5 cut(s)	96, 162, 201, 286, 434
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 368, 400
FatI	CATG	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	217
HapII	CCGG	2 cut(s)	20, 423
Hin1II	CATG	1 cut(s)	288
HindIII	AAGCTT	2 cut(s)	366, 382
HinfI	GANTC	2 cut(s)	332, 388
HpaII	CCGG	2 cut(s)	20, 423
HphI	GGTGA	2 cut(s)	54, 464
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	172, 319, 355
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	103, 243, 465
HpyCH4V	TGCA	4 cut(s)	68, 329, 338, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	155, 231, 319
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	33, 78, 259, 405, 436
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	157, 233, 321
MboI	GATC	3 cut(s)	155, 231, 319
MboII	GAAGA	8 cut(s)	43, 46, 48, 49, 51, 196, 304, 308
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	344, 435
MnlI	CCTC	7 cut(s)	16, 19, 70, 84, 100, 106, 396
MspI	CCGG	2 cut(s)	20, 423
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	3 cut(s)	155, 231, 319
NlaIII	CATG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	332, 388
PkrI	GCNGC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	61
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	3 cut(s)	155, 231, 319
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	5 cut(s)	56, 67, 88, 370, 386
SfcI	CTRYAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	344, 435
SsiI	CCGC	1 cut(s)	217
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	103, 243, 465
TasI	AATT	2 cut(s)	344, 435
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	332, 388
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspRI	CASTG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.