Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Reverse (-)

7520791 .. 7523633

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G136100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGAAGCGACAGGAAATCCGAGGAGAAGAAGAAGAGTAGGAAAAGGAGCACTTCTTCAGATTCTGAAGATGAGAGAAAAGGTAAGAGGCGTAGACCTGTAGAAGATGAGGAAAGGAAGAGCAGAAGGAGTGATAAGAAGGAGAAGTCAAAGGACAAGAAAAGGTCACATAAGCACTCGAAACACCATTCTGATAAAGAAAAGAAGACAAAGGATAAGCACAAAAGTAAACATCACAAAGGTGATCGCCACTTGAAAATTGAGTTCCAAGAGCTGTCCACTGATGACTATTTTTCCAAGAACAATGAGTTTTCTACATGGCTGAAAGAAGAGAAAGATGTGTTCTTCTCCGATCTTTCGTCTGAGTCTGCACGCCAACTATTTTCAGACTTTGTGAAAGTTTGGAACAAGCAAAAGCTCGAATCCAAATACTACGAGGGGATTGCGAGCGGGCCCCGGTGCGCCCATACGTGGAAAATTAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

19.4

Weight (kDa)

9.84

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	94
AciI	CCGC	1 cut(s)	450
AcuI	CTGAAG	2 cut(s)	42, 87
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	256
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	274, 418
AluI	AGCT	2 cut(s)	274, 418
Alw21I	GWGCWC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	452
ApaI	GGGCCC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	452, 453
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BcnI	CCSGG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	452, 453
BmiI	GGNNCC	2 cut(s)	454, 455
BmrFI	CCNGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	21, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	21, 455
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	471
BsnI	GGCC	1 cut(s)	454
Bsp120I	GGGCCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	53, 456
Bsp143I	GATC	2 cut(s)	244, 352
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	454, 455
BspQI	GCTCTTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	21, 455
BssMI	GATC	2 cut(s)	244, 352
Bst6I	CTCTTC	3 cut(s)	29, 113, 324
BstBAI	YACGTR	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	373, 448, 452
BstDEI	CTNAG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	2 cut(s)	247, 355
BstMBI	GATC	2 cut(s)	244, 352
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	373, 448, 452
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	452, 453
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	5 cut(s)	274, 322, 418, 454, 486
CviKI_1	RGCY	5 cut(s)	274, 322, 418, 454, 486
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	2 cut(s)	246, 354
DpnII	GATC	2 cut(s)	244, 352
Eam1104I	CTCTTC	3 cut(s)	29, 113, 324
EarI	CTCTTC	3 cut(s)	29, 113, 324
Eco24I	GRGCYC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	42, 87
EcoO109I	RGGNCCY	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	1 cut(s)	321
FaiI	YATR	3 cut(s)	171, 319, 468
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	443
FblI	GTMKAC	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	456
GlaI	GCGC	1 cut(s)	463
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	457
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	3 cut(s)	62, 365, 422
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	95, 230, 279
Hpy188I	TCNGA	7 cut(s)	22, 61, 67, 193, 352, 364, 388
Hpy8I	GTNNAC	3 cut(s)	95, 230, 279
HpyAV	CCTTC	2 cut(s)	120, 133
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	244, 352
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	2 cut(s)	111, 470
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	2 cut(s)	246, 354
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	2 cut(s)	244, 352
MhlI	GDGCHC	2 cut(s)	53, 456
MluCI	AATT	2 cut(s)	258, 477
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	16, 81, 103, 430
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	457
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	244, 352
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	2 cut(s)	454, 455
NmuCI	GTSAC	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	62, 422
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	454, 455
PspOMI	GGGCCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	452, 453
PstNI	CAGNNNCTG	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	480
Sau3AI	GATC	2 cut(s)	244, 352
Sau96I	GGNCC	2 cut(s)	452, 453
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	2 cut(s)	53, 456
SetI	ASST	7 cut(s)	85, 100, 167, 244, 276, 420, 473
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	2 cut(s)	258, 477
SsiI	CCGC	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	455
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	179, 420
TasI	AATT	2 cut(s)	258, 477
TfiI	GAWTC	2 cut(s)	62, 422
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	165
TspRI	CASTG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.