Rw5G016280

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
20396319 .. 20398705
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G016280.1

Sequence Viewer

Length: 456 bp
ATGGGAAGCGACAGGAAACCGGAGGAGGAGAAGAAGAAGATTAGGAAAAGGAGCTCTTCTTCACCTGCACAAGATGAGGGGAAAGGTAAGAGGCACAGAACGGTAGAAGATGAGGATAGAAAGAGCCGAAAGAGTGACAAGAAGGACAAGAAGAGATCACATAAGCACTCTGATAAAGAAAAGAAGACAAAGGATAAGCATAGAAGTAAACATCACCGCTTGAACATTGAGATCCAAGAACTGTCCGGTGATGACTATTTCTCTAAGAACAATGAGTTCTCCACTTGGCTGAAAGAAGAGAAAGAGGTGTTCTTCTCTGATCTTTCTGCAGAATCTGCACGGCAACTGTTTTCAGACTTTGTGAAAGCTTGGAACAAGAAAAAGCTTGAATCCAGATACTACGAGGGGATTGAAACTGCACCCCGGTCTGCTCATAATTGGAAAATCAAAGGGTGA

Protein Analysis

151

Amino Acids

17.98

Weight (kDa)

9.77

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AciI CCGC 1 cut(s) 217
AclWI GGATC 1 cut(s) 226
AgsI TTSAA 3 cut(s) 223, 389, 413
AluBI AGCT 3 cut(s) 54, 368, 385
AluI AGCT 3 cut(s) 54, 368, 385
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 3 cut(s) 54, 206, 260
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 356
BcnI CCSGG 1 cut(s) 424
BfmI CTRYAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 422
BsaWI WCCGGW 2 cut(s) 19, 245
BseDI CCNNGG 1 cut(s) 422
BseRI GAGGAG 2 cut(s) 38, 41
BsgI GTGCAG 3 cut(s) 51, 321, 402
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 3 cut(s) 20, 246, 424
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 3 cut(s) 155, 231, 319
BspACI CCGC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 3 cut(s) 155, 231, 319
Bst4CI ACNGT 3 cut(s) 103, 243, 348
Bst6I CTCTTC 3 cut(s) 61, 146, 291
BstAPI GCANNNNNTGC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 264
BstKTI GATC 3 cut(s) 158, 234, 322
BstMBI GATC 3 cut(s) 155, 231, 319
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BveI ACCTGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 335
CviJI RGCY 5 cut(s) 54, 126, 289, 368, 385
CviKI_1 RGCY 5 cut(s) 54, 126, 289, 368, 385
DdeI CTNAG 1 cut(s) 264
DpnI GATC 3 cut(s) 157, 233, 321
DpnII GATC 3 cut(s) 155, 231, 319
Eam1104I CTCTTC 3 cut(s) 61, 146, 291
EarI CTCTTC 3 cut(s) 61, 146, 291
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 56
FaiI YATR 3 cut(s) 162, 201, 435
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FriOI GRGCYC 1 cut(s) 56
HapII CCGG 3 cut(s) 20, 246, 424
HindIII AAGCTT 2 cut(s) 366, 383
HinfI GANTC 2 cut(s) 332, 389
HpaII CCGG 3 cut(s) 20, 246, 424
HphI GGTGA 3 cut(s) 54, 206, 260
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 172, 319, 355
Hpy188III TCNNGA 1 cut(s) 393
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 3 cut(s) 103, 243, 348
HpyCH4V TGCA 4 cut(s) 68, 329, 338, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 264
Kzo9I GATC 3 cut(s) 155, 231, 319
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 5 cut(s) 33, 78, 259, 406, 437
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 157, 233, 321
MboI GATC 3 cut(s) 155, 231, 319
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 436
MnlI CCTC 7 cut(s) 16, 19, 70, 84, 106, 298, 397
MspI CCGG 3 cut(s) 20, 246, 424
MspR9I CCNGG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 1 cut(s) 424
NdeII GATC 3 cut(s) 155, 231, 319
NmuCI GTSAC 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 332, 389
Psp124BI GAGCTC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 231
SacI GAGCTC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 61
Sau3AI GATC 3 cut(s) 155, 231, 319
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 1 cut(s) 56
SetI ASST 6 cut(s) 56, 67, 88, 309, 370, 387
SfcI CTRYAG 1 cut(s) 327
Sse9I AATT 1 cut(s) 436
SsiI CCGC 1 cut(s) 217
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 422
TaaI ACNGT 3 cut(s) 103, 243, 348
TasI AATT 1 cut(s) 436
TfiI GAWTC 2 cut(s) 332, 389
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.