Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010482

Physical Location & Seq

Genomic Coordinates Forward (+)

23485523 .. 23487803

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGAAGCGACCGGAAATCCGAGGAGAAGAAGAGTAGGAAAAGGAGCCCCTCTTCATCTTCCGAAGATGAGGGAAGAGGCAAGAGGCAGAGACCAGTAGAAGATGAGGACAAGAAGAGCAGGAGGAGTGATAAGAGGGACAAGTCAAAGGACAAGAAAAAATCTCATAAGCACTCAAAACACCGTTCCGATAAGGAAAAGAAGACAAAAGACAAGCGCAAAAGTAAACAACACAAAGGCGATCGCCTCTGGAAAATTGACTTCCAAGAGCTGTCGAACGATGACTATTTCCTCAAGAACAATGAGTTCTCTACGTGGCTGAAAGAAGAGAAAGATGTGTTCTTCTCCGATCTTTCATCAGAGTCTGCACGCCAACTATTTGCAGACTTCGTGAAAGTTTGGAACAAACAAAAACTTGAATCCAAGTACTACGAGGGGATCGCGAGTGGCCCCCGGTGTGCCCATGCGTGGAAAATTAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009966 GO:0010646 GO:0010928 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048479 GO:0048480 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051782 GO:0061458 GO:0065007 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

19.14

Weight (kDa)

9.86

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79200
fragaria_vesca	FvH4_3g15210
malus_domestica	MD05G1224500.v1.1 MD10G1206200.v1.1
prunus_persica	Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1 Prupe.4G136100_v2.0.a1
pyrus_communis	pycom05g20710 pycom10g17600
rosa_chinensis	RchiOBHm_Chr5g0025651
rosa_laevigata	RLG00000032855
rosa_multiflora	Rmu_sc0002137.1_g000003 Rmu_sc0018566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00053520 Rroxscaffold_1G00054200
rosa_rugosa	Rorug05G0087500
rosa_samantha	Rh5AG179300 Rh5BG178400 Rh5CG196000 Rh5DG177600
rosa_wichuraiana	Rw5G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	443
AclWI	GGATC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	468
AgsI	TTSAA	1 cut(s)	419
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	448
AsiSI	GCGATCGC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	47, 451
BmrFI	CCNGG	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	21, 452
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	21, 452
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	38, 139
BseSI	GKGCMC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	2 cut(s)	13, 244
BshFI	GGCC	1 cut(s)	450
BsiEI	CGRYCG	2 cut(s)	13, 244
BsiSI	CCGG	2 cut(s)	13, 454
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	50, 463
Bsp143I	GATC	3 cut(s)	241, 349, 438
Bsp68I	TCGCGA	1 cut(s)	443
BspANI	GGCC	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	47, 451
BspPI	GGATC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	21, 452
BssMI	GATC	3 cut(s)	241, 349, 438
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	5 cut(s)	26, 58, 70, 110, 321
BstBAI	YACGTR	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	244, 352, 441
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	241, 349, 438
BstMCI	CGRYCG	2 cut(s)	13, 244
BstSCI	CCNGG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	450
BtuMI	TCGCGA	1 cut(s)	443
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	4 cut(s)	48, 271, 319, 450
CviKI_1	RGCY	4 cut(s)	48, 271, 319, 450
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	3 cut(s)	243, 351, 440
DpnII	GATC	3 cut(s)	241, 349, 438
Eam1104I	CTCTTC	5 cut(s)	26, 58, 70, 110, 321
EarI	CTCTTC	5 cut(s)	26, 58, 70, 110, 321
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	1 cut(s)	467
FaiI	YATR	2 cut(s)	168, 465
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	50
GlaI	GCGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	2 cut(s)	13, 454
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	467
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	362, 419
HpaII	CCGG	2 cut(s)	13, 454
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	5 cut(s)	22, 64, 190, 349, 361
Hpy188III	TCNNGA	4 cut(s)	250, 295, 391, 442
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	368, 383
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	467
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	241, 349, 438
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	26, 106, 108, 235, 467
MaeII	ACGT	1 cut(s)	314
MalI	GATC	3 cut(s)	243, 351, 440
MboI	GATC	3 cut(s)	241, 349, 438
MhlI	GDGCHC	2 cut(s)	50, 463
MluCI	AATT	2 cut(s)	255, 474
MlyI	GAGTC	1 cut(s)	371
MseI	TTAA	1 cut(s)	477
MspI	CCGG	2 cut(s)	13, 454
MspR9I	CCNGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	443
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	241, 349, 438
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	2 cut(s)	47, 451
NruI	TCGCGA	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	419
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	47, 451
PspPI	GGNCC	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	365
PvuI	CGATCG	1 cut(s)	244
RgaI	GCGATCGC	1 cut(s)	244
RruI	TCGCGA	1 cut(s)	443
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	3 cut(s)	241, 349, 438
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	50, 463
SetI	ASST	2 cut(s)	273, 317
SfaAI	GCGATCGC	1 cut(s)	244
SgfI	GCGATCGC	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	255, 474
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	255, 474
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	45, 345
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.