Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Reverse (-)

29844621 .. 29853466

Gene Structure 8846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3888 bp

ATGACGCAGTCGCCTGTTCAACCGCCTCCGCCGCTCCCAGCTCAGCCGCATTCCGCCGCCGGAGGTGTAATAAGAGGCGATGTACAGGTTAGGTGCGCAGGCTGTCGCGTGATTCTGAGGGTGAAAACCGGCGTTGTGGAGTTCTCGTGTCCGACTTGTCAACTTCCCCAAATGTTGCCGCCGGAGCTTCTTTCTAGGGCACGGCCGCAGTTTCCGCAGTCTCCACAACAACCACCACAGCCAATTCAGACGCTTCCGCCACCGATTCAACAGCAGCTTAAGCCTCTTAATCTACCTAGGCCTCCGGTTCCGGCACATGGAATCGATCCGACGAAGATGCAATTGCCTTGCGCTAACTGTCAGGCTATCCTCAATGTGCCTCATGGACTCACTCGGTTCTCGTGTCCTCAGTGCCATGTCGAGCTCGCTGTTGATGTCTCCAAGCTTAATCGGTCTTTAACTGCTTCTCAATCTCATTCTAATCCTCCTACTCCTGCTGCTCCCACAGTCCCGCCTCCGCCTCCTCCCGAAGAAGTCAATGAGGAAGCTATTGAAGTGGAGAGAGAAGAAGATGAAGGTGGAACGGCTGGAGAAACGTTTATGGATTATCGTCCCCCAAAACTTTCGATCGGACCTCCTCATCCTGATCCAATTGTGGAAACATCATCTCTATCTGCAGTGCAACCCCCAGAGCCTACTTATGATCTCAAAATCAAGGAAGAGCTTGAAAGGTCAAAGGCTTTATCGTGTTTGCAGATTGAGACATTAGTTTACGCTTGCCAGAGGCATCTCCAGCACCTTGCTGATGGTACCAGAGCAGGCTTTTTTGTTGGAGATGGTGCTGGTGTGGGCAAAGGGCGAACAATTGCCGGGTTGATTTGGGAAAATTGGAAACATGGAAGGAGGAAAGCTTTGTGGATTTCTATTGGCTCAGACTTGAAATATGATGCAAGAAGGGACTTGGATGATGTGGGTGCTACATGCGTTGGAGTGAATCCTTTGAACAAGCTACCCTATTCTAAGCTTGACTCGAAAAATGTTGGTATTAAAGAAGGAGTGGTATTCTTGACATACAATAGCCTCATTGCTTCCTCTGAGAAGGGCCGTTCTCGTTTACAGCAGCTTGTTCAATGGTGTGGACCAGAATTTGATGGTCTCTTGATCTTTGATGAGTGCCATAAAGCGAAAAATTTGGTACCTGAAGCTGGGAGTCAGCCGACACGCATCGGACAGGCAGTTGTTGACATTCAGGATAAGATCCCCCAAGCACGTGTTATTTATTGCTCGGCTACTGGGGCATCAGAACCACGAAACATGGGTTATATGGTCAGGCTTGGTCTTTGGGGAGCTGGAACAAGTTTTAGTGATTTTAACAAATTCCTAGGTGCCCTTGATAAAGGTGGGACAGGAGCGTTGGAATTGGTTGCCATGGATATGAAAGCGAGGGGGATGTATGTATGCCGAACCCTGAGTTACAAAGGGGCTGAGTTTGAGATTGTTGAAGCTCGTTTAGAAGCAGGAATGGAGGCAATGTACAATAAGTCTGCAGAATTTTGGGCAGAGCTACGGATAGAGTTGTTGTCAGCAAGTGCTTTTCTCCCTAACGAGAAACCAAATTCTAGTCAGTTGTGGAGATTATACTGGTCAAGCCACCAGCGTTTCTTTAGACACCTGTGTATGTCAGCTAAAGTCCCTGTAACTGTGAGGTTAGCTAAGAAAGCCTTGTCAACAAACAAGTGTGTAGTTATTGGCCTTCAGAGTACTGGAGAGGCTCGAACCGAAGAGGCTGTAAATAAATATGGTCTTGAGCTTGATGATTTTGTCTCGGGACCTCGAGAGCTCTTGTTGAAATTTGTGGAAGAGAATTATCCCTTACCCGAGCAGCCTGAACCTCTGTCAGAGGATGATAGTGTTAAAGAACTTCAGAGGAAGAGGCATTCAGCTTCACCTGGTGTTTCAATTAGAGGGAGAGTAAGAAAGATGGCAAAGTGGAAACCAGATAGTGATAATGAAAGTGATTTGGAGTCTGAAGCTGACTCTGCTGACGATTCTAATGATTCTGATGATGAGTTCCAGATATGTCAGATATGCAGTGGGGAAGATGAAAGGAAGAAGTTGCTCCATTGTTCTGAATGTGACAAGCTTTTTCATCCGGACTGTGTGGTTCCTCCAGTTATAGACTTACCATCTGAAGCGTGGATTTGCTTTTCTTGTAAGGAAAAGACAGAGGAGTACATTCAAGCAAGACGTCTTTACATTGCCGAATTGCAGAAAAGGTATGAAGCAGCGCTTGAACGAAAATCAAAGATCATAGAGATCATCCGTTCTCTGAATCTTCCAAACAATCCTTTGGATGACATCGTCGATCAGCTTGGAGGCCCTGAAAAAGTTGCAGAAATGACGGGCAGGCGAGGTATGCTTGTAAGAGCATCGAATGGGAAAGGTGTTACATATCAAGCAAGAAACACAAAGGATATTACCATGGAAATGGTCAACATGCACGAGAAGCAACTATTTATGGATGGTAAAAAGTTGGTTGCCATTATTTCTGAAGCTGGGTCAGCTGGTGTTTCGTTGCAAGCAGATAGAAGGGCAGTAAATCAGAAAAGAAGGGTTCACTTGACTTTAGAGCTTCCCTGGAGTGCTGATCGTGCAATTCAGCAATTTGGAAGAACTCACCGGTCAAATCAGACATCTGCACCTGAATATAGACTACTCTTCACTAATCTCGGTGGGGAACGCCGCTTTGCCTCTATTGTTGCAAAGAGACTAGAAACACTTGGTGCTTTAACACAGGGAGACCGCAGGGCTGGGCCCTCCGGGCCTTCTTTGAGTGCGTATAATTATGATAGTAACTTTGGTAAAAAATCCTTGATGGTGATGTATCGAGGCATAATGGAGCAGGAGAAACTACCTGTTCTTCCTCCTGGATGCTCGATTGATGAACCCGAAACAGTTAAAGAGTTTTTGACCAAGGCAAGGGCTGCTCTTGTTGCGGTTGGAATTGTTAGGGACAGTGTTCTGGCCAATGGGAAAGATGTTGGAAGGTTTTCAGGACGTATTATTGATTCTGACATGCATGATGTTGGACGATTTTTGAATCGCCTCTTAGGATTGCCACCTGATATCCAGAATAGGCTGTTTGAATTGTTTACTAGTATATTAGACGTTCTTGTACATAATGCTCGGATAGAAGGAAGTTTTGACTCAGGAATTGTGGATATGAAAGCTAATAGTGTTGAGCTACTGAGCACTCCAAAGACCGTCCATGTTGATCAAATGTCTGGTGCCTCAACTATGCTCTTTACTTTTACTCTAGATCGTGGTGTAACATGGGAGTCTGCGAGTTCAATGCTAGAGGGAAAGAGAAGGGACGGGCTTGGTTCAGCTAATGATGGCTTTTTTGAATCTAAAAGGGAATGGTTAGGAAGACGGCACTTCATATTAGCATTTGAGAGTGCCGCTTCTGGGTTGTTTAAGATTGTACGTCCTGCTGTAGGAGAGTCGATCAGGGAGATGTCTCTTTCAGAGTTGAAAACTAAATACCGAAAACTATCTTCTCTGGAGAAGGCTCGTACTGGTTGGGAGGACGAGTACGAAGTTTCATCAAAACAGTGTATGCATGGACCCAAGTGTAAGCTTGGGGAGTATTGCACGGTTGGACGTAGGATACAGGAAGTAAACGTTGTGGGTGGCCTTATTCTTCCCATCTGGGGAACCATCGAGAAAGCTCTCTCCAAACAAGCCCGTCACAGCCACAAGAGAATTCGAGTTATACGCATAGAGACTACGACGGATAATCAGCGGATAGTGGGCCTCTCCATCCCAAATGCAGCTGTAGAAACTGTTTTACAAGATTTAGCATGGGTTCAAGAGATTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0010468 GO:0016043 GO:0016584 GO:0019222 GO:0022607 GO:0031490 GO:0031497 GO:0034622 GO:0034728 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0071103 GO:0071824 GO:0071840 GO:0080134 GO:0080135 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1990841

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

1295

Amino Acids

143.62

Weight (kDa)

7.1

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_FGT1_1	PF23547	28 - 62	6e-18	FORGETTER1 first zinc ribbon domain
Zn_ribbon_FGT1_1	PF23547	113 - 143	8.9e-11	FORGETTER1 first zinc ribbon domain
Zn_ribbon_FGT1_2	PF23548	114 - 146	3.3e-16	FORGETTER1 second zinc ribbon domain
AAA_34	PF13872	213 - 514	1.5e-132	P-loop containing NTP hydrolase pore-1
ResIII	PF04851	259 - 431	7e-07	Type III restriction enzyme, res subunit
PHD	PF00628	694 - 738	1.6e-09	PHD-finger
Helicase_C_4	PF13871	782 - 1074	3.5e-106	C-terminal domain on Strawberry notch homologue
SBNO	PF25373	1111 - 1223	5.1e-18	SBNO alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2251
Acc16I	TGCGCA	1 cut(s)	97
Acc65I	GGTACC	2 cut(s)	809, 1195
AccB1I	GGYRCC	4 cut(s)	809, 1195, 1385, 3287
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	2152
AclI	AACGTT	2 cut(s)	596, 3684
AclWI	GGATC	3 cut(s)	320, 641, 1252
AcoI	YGGCCR	2 cut(s)	203, 3024
AcsI	RAATTY	7 cut(s)	1145, 1189, 1376, 1550, 1615, 1850, 3765
AcuI	CTGAAG	6 cut(s)	1221, 1739, 1907, 2049, 2211, 2571
AcvI	CACGTG	1 cut(s)	1271
AcyI	GRCGYC	1 cut(s)	2248
AdeI	CACNNNGTG	2 cut(s)	1952, 2783
AfeI	AGCGCT	1 cut(s)	2289
AfiI	CCNNNNNNNGG	6 cut(s)	317, 1205, 2979, 3468, 3497, 3713
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	1270
AgeI	ACCGGT	1 cut(s)	2679
AhlI	ACTAGT	1 cut(s)	3155
AjnI	CCWGG	3 cut(s)	1948, 2636, 2926
Alw21I	GWGCWC	3 cut(s)	426, 1842, 3254
Alw26I	GTCTC	9 cut(s)	225, 442, 755, 1160, 1828, 2761, 2793, 3525, 3779
AlwI	GGATC	3 cut(s)	320, 641, 1252
Ama87I	CYCGRG	3 cut(s)	1825, 1833, 1877
Aor13HI	TCCGGA	1 cut(s)	2152
Aor51HI	AGCGCT	1 cut(s)	2289
ApaI	GGGCCC	1 cut(s)	2817
ApeKI	GCWGC	7 cut(s)	274, 497, 1120, 1882, 2285, 2984, 3833
ApoI	RAATTY	7 cut(s)	1145, 1189, 1376, 1550, 1615, 1850, 3765
AsiGI	ACCGGT	1 cut(s)	2679
Asp700I	GAANNNNTTC	1 cut(s)	3049
Asp718I	GGTACC	2 cut(s)	809, 1195
AspA2I	CCTAGG	2 cut(s)	296, 1381
AspLEI	GCGC	3 cut(s)	98, 353, 2290
AsuC2I	CCSGG	2 cut(s)	871, 2821
AsuHPI	GGTGA	4 cut(s)	133, 1938, 2669, 2890
AvaI	CYCGRG	3 cut(s)	1825, 1833, 1877
AvaII	GGWCC	4 cut(s)	632, 1139, 1829, 3626
AvrII	CCTAGG	2 cut(s)	296, 1381
BaeGI	GKGCMC	3 cut(s)	202, 1390, 2817
BalI	TGGCCA	1 cut(s)	3026
BanI	GGYRCC	4 cut(s)	809, 1195, 1385, 3287
BanII	GRGCYC	3 cut(s)	426, 1842, 2817
BauI	CACGAG	3 cut(s)	145, 400, 2501
BbrPI	CACGTG	1 cut(s)	1271
BbsI	GAAGAC	1 cut(s)	3436
Bbv12I	GWGCWC	3 cut(s)	426, 1842, 3254
BbvI	GCAGC	7 cut(s)	286, 484, 1132, 1894, 2297, 2971, 3845
BceAI	ACGGC	4 cut(s)	218, 600, 1089, 3449
BcgI	CGANNNNNNTGC	4 cut(s)	319, 353, 3334, 3368
BciT130I	CCWGG	3 cut(s)	1950, 2638, 2928
BciVI	GTATCC	1 cut(s)	3663
BclI	TGATCA	1 cut(s)	3274
BcnI	CCSGG	2 cut(s)	871, 2821
BcoDI	GTCTC	9 cut(s)	225, 442, 755, 1160, 1828, 2761, 2793, 3525, 3779
BcuI	ACTAGT	1 cut(s)	3155
BfaI	CTAG	8 cut(s)	195, 297, 1382, 1620, 2771, 3156, 3317, 3356
BfmI	CTRYAG	4 cut(s)	675, 1545, 3495, 3837
BfoI	RGCGCY	1 cut(s)	2291
BfrI	CTTAAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	3663
BglI	GCCNNNNNGGC	1 cut(s)	2821
BlnI	CCTAGG	2 cut(s)	296, 1381
BlpI	GCTNAGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	1762
Bme1390I	CCNGG	5 cut(s)	871, 1950, 2638, 2821, 2928
Bme18I	GGWCC	4 cut(s)	632, 1139, 1829, 3626
BmeT110I	CYCGRG	3 cut(s)	1825, 1833, 1877
BmrFI	CCNGG	5 cut(s)	871, 1950, 2638, 2821, 2928
BmrI	ACTGGG	1 cut(s)	1302
BmsI	GCATC	7 cut(s)	327, 796, 937, 1233, 1307, 2438, 2921
BmuI	ACTGGG	1 cut(s)	1302
BpiI	GAAGAC	1 cut(s)	3436
BpmI	CTGGAG	6 cut(s)	609, 776, 1785, 2154, 2659, 3584
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	1826
BpuMI	CCSGG	2 cut(s)	871, 2821
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	1271
BsaHI	GRCGYC	1 cut(s)	2248
BsaI	GGTCTC	2 cut(s)	1160, 2793
BsaJI	CCNNGG	6 cut(s)	296, 1381, 1428, 2481, 2636, 2973
BsaWI	WCCGGW	3 cut(s)	304, 2152, 2679
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 1517, 1547, 3578, 3608
Bsc4I	CCNNNNNNNGG	6 cut(s)	317, 1205, 2979, 3468, 3497, 3713
Bse118I	RCCGGY	2 cut(s)	128, 2679
Bse1I	ACTGG	5 cut(s)	1297, 1646, 1768, 2171, 3583
Bse3DI	GCAATG	3 cut(s)	1083, 1536, 2256
BseAI	TCCGGA	1 cut(s)	2152
BseBI	CCWGG	3 cut(s)	1950, 2638, 2928
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	6 cut(s)	296, 1381, 1428, 2481, 2636, 2973
BseLI	CCNNNNNNNGG	6 cut(s)	317, 1205, 2979, 3468, 3497, 3713
BseMI	GCAATG	3 cut(s)	1083, 1536, 2256
BseMII	CTCAG	9 cut(s)	56, 107, 422, 945, 1086, 1460, 1476, 3222, 3239
BseNI	ACTGG	5 cut(s)	1297, 1646, 1768, 2171, 3583
BseRI	GAGGAG	3 cut(s)	513, 627, 2243
BseSI	GKGCMC	3 cut(s)	202, 1390, 2817
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	7 cut(s)	286, 484, 1132, 1894, 2297, 2971, 3845
BseYI	CCCAGC	4 cut(s)	37, 1205, 2555, 2810
BsgI	GTGCAG	1 cut(s)	2682
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	2 cut(s)	206, 630
BshNI	GGYRCC	4 cut(s)	809, 1195, 1385, 3287
BshTI	ACCGGT	1 cut(s)	2679
BshVI	ATCGAT	1 cut(s)	324
BsiEI	CGRYCG	2 cut(s)	206, 630
BsiHKAI	GWGCWC	3 cut(s)	426, 1842, 3254
BsiHKCI	CYCGRG	3 cut(s)	1825, 1833, 1877
BsiSI	CCGG	9 cut(s)	60, 129, 182, 305, 311, 870, 2153, 2680, 2820
BslFI	GGGAC	8 cut(s)	494, 597, 971, 1417, 1676, 1842, 3026, 3386
BslI	CCNNNNNNNGG	6 cut(s)	317, 1205, 2979, 3468, 3497, 3713
BsmAI	GTCTC	9 cut(s)	225, 442, 755, 1160, 1828, 2761, 2793, 3525, 3779
BsmFI	GGGAC	8 cut(s)	494, 597, 971, 1417, 1676, 1842, 3026, 3386
BsmI	GAATGC	2 cut(s)	49, 1936
Bso31I	GGTCTC	2 cut(s)	1160, 2793
BsoBI	CYCGRG	3 cut(s)	1825, 1833, 1877
Bsp120I	GGGCCC	1 cut(s)	2813
Bsp1286I	GDGCHC	6 cut(s)	202, 426, 1390, 1842, 2817, 3254
Bsp13I	TCCGGA	1 cut(s)	2152
Bsp1407I	TGTACA	3 cut(s)	82, 1533, 3175
Bsp1720I	GCTNAGC	1 cut(s)	42
Bsp19I	CCATGG	2 cut(s)	1428, 2481
BspCNI	CTCAG	9 cut(s)	55, 108, 421, 944, 1087, 1461, 1477, 3221, 3240
BspDI	ATCGAT	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	2152
BspFNI	CGCG	1 cut(s)	108
BspMAI	CTGCAG	2 cut(s)	679, 1549
BspPI	GGATC	3 cut(s)	320, 641, 1252
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	4 cut(s)	809, 1195, 1385, 3287
BspTI	CTTAAG	1 cut(s)	278
BspTNI	GGTCTC	2 cut(s)	1160, 2793
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	3 cut(s)	1083, 1536, 2256
BsrFI	RCCGGY	2 cut(s)	128, 2679
BsrGI	TGTACA	3 cut(s)	82, 1533, 3175
BsrI	ACTGG	5 cut(s)	1297, 1646, 1768, 2171, 3583
BssAI	RCCGGY	2 cut(s)	128, 2679
BssECI	CCNNGG	6 cut(s)	296, 1381, 1428, 2481, 2636, 2973
BssNI	GRCGYC	1 cut(s)	2248
BssSI	CACGAG	3 cut(s)	145, 400, 2501
BssT1I	CCWWGG	5 cut(s)	296, 1381, 1428, 2481, 2973
Bst2BI	CACGAG	3 cut(s)	145, 400, 2501
Bst2UI	CCWGG	3 cut(s)	1950, 2638, 2928
Bst6I	CTCTTC	5 cut(s)	714, 1776, 1854, 1925, 2723
BstACI	GRCGYC	1 cut(s)	2248
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	2984
BstAUI	TGTACA	3 cut(s)	82, 1533, 3175
BstBAI	YACGTR	1 cut(s)	1271
BstC8I	GCNNGC	6 cut(s)	100, 426, 778, 820, 2408, 2580
BstDSI	CCRYGG	2 cut(s)	1428, 2481
BstENI	CCTNNNNNAGG	1 cut(s)	3495
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	2291
BstHHI	GCGC	3 cut(s)	98, 353, 2290
BstMAI	GTCTC	9 cut(s)	225, 442, 755, 1160, 1828, 2761, 2793, 3525, 3779
BstMCI	CGRYCG	2 cut(s)	206, 630
BstNI	CCWGG	3 cut(s)	1950, 2638, 2928
BstNSI	RCATGY	3 cut(s)	984, 2500, 3079
BstSCI	CCNGG	5 cut(s)	869, 1948, 2636, 2819, 2926
BstSFI	CTRYAG	4 cut(s)	675, 1545, 3495, 3837
BstSLI	GKGCMC	3 cut(s)	202, 1390, 2817
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	7 cut(s)	286, 484, 1132, 1894, 2297, 2971, 3845
BstV2I	GAAGAC	1 cut(s)	3436
BstX2I	RGATCY	1 cut(s)	1257
BstXI	CCANNNNNNTGG	1 cut(s)	2488
BstYI	RGATCY	1 cut(s)	1257
BstZI	CGGCCG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	3663
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	2 cut(s)	1428, 2481
BtgZI	GCGATG	1 cut(s)	93
BtsI	GCAGTG	2 cut(s)	684, 2098
BtsIMutI	CAGTG	5 cut(s)	416, 684, 2098, 3022, 3620
Cac8I	GCNNGC	6 cut(s)	100, 426, 778, 820, 2408, 2580
CfoI	GCGC	3 cut(s)	98, 353, 2290
Cfr10I	RCCGGY	2 cut(s)	128, 2679
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	2 cut(s)	13, 259
CsiI	ACCWGGT	1 cut(s)	1948
CspAI	ACCGGT	1 cut(s)	2679
DraIII	CACNNNGTG	2 cut(s)	1952, 2783
EaeI	YGGCCR	2 cut(s)	203, 3024
EagI	CGGCCG	1 cut(s)	203
Eam1104I	CTCTTC	5 cut(s)	714, 1776, 1854, 1925, 2723
EarI	CTCTTC	5 cut(s)	714, 1776, 1854, 1925, 2723
EciI	GGCGGA	4 cut(s)	18, 43, 246, 507
Ecl136II	GAGCTC	2 cut(s)	424, 1840
EclXI	CGGCCG	1 cut(s)	203
Eco130I	CCWWGG	5 cut(s)	296, 1381, 1428, 2481, 2973
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	3 cut(s)	426, 1842, 2817
Eco31I	GGTCTC	2 cut(s)	1160, 2793
Eco32I	GATATC	1 cut(s)	3127
Eco47I	GGWCC	4 cut(s)	632, 1139, 1829, 3626
Eco47III	AGCGCT	1 cut(s)	2289
Eco52I	CGGCCG	1 cut(s)	203
Eco53kI	GAGCTC	2 cut(s)	424, 1840
Eco57I	CTGAAG	6 cut(s)	1221, 1739, 1907, 2049, 2211, 2571
Eco72I	CACGTG	1 cut(s)	1271
Eco88I	CYCGRG	3 cut(s)	1825, 1833, 1877
EcoICRI	GAGCTC	2 cut(s)	424, 1840
EcoNI	CCTNNNNNAGG	1 cut(s)	3495
EcoO109I	RGGNCCY	3 cut(s)	1829, 2378, 2814
EcoRI	GAATTC	1 cut(s)	3765
EcoRII	CCWGG	3 cut(s)	1948, 2636, 2926
EcoRV	GATATC	1 cut(s)	3127
EcoT14I	CCWWGG	5 cut(s)	296, 1381, 1428, 2481, 2973
EcoT22I	ATGCAT	2 cut(s)	3081, 3624
EcoT38I	GRGCYC	3 cut(s)	426, 1842, 2817
ErhI	CCWWGG	5 cut(s)	296, 1381, 1428, 2481, 2973
FalI	AAGNNNNNCTT	4 cut(s)	1706, 1738, 2274, 2306
FaqI	GGGAC	8 cut(s)	494, 597, 971, 1417, 1676, 1842, 3026, 3386
FauI	CCCGC	1 cut(s)	519
FbaI	TGATCA	1 cut(s)	3274
FriOI	GRGCYC	3 cut(s)	426, 1842, 2817
FspBI	CTAG	8 cut(s)	195, 297, 1382, 1620, 2771, 3156, 3317, 3356
FspI	TGCGCA	1 cut(s)	97
GlaI	GCGC	3 cut(s)	97, 352, 2289
GsaI	CCCAGC	4 cut(s)	41, 1209, 2559, 2814
GsuI	CTGGAG	6 cut(s)	609, 776, 1785, 2154, 2659, 3584
HaeII	RGCGCY	1 cut(s)	2291
HapII	CCGG	9 cut(s)	60, 129, 182, 305, 311, 870, 2153, 2680, 2820
HgaI	GACGC	2 cut(s)	13, 259
HhaI	GCGC	3 cut(s)	98, 353, 2290
Hin1I	GRCGYC	1 cut(s)	2248
Hin6I	GCGC	3 cut(s)	96, 351, 2288
HinP1I	GCGC	3 cut(s)	96, 351, 2288
HincII	GTYRAC	4 cut(s)	161, 1243, 1728, 2494
HindII	GTYRAC	4 cut(s)	161, 1243, 1728, 2494
HindIII	AAGCTT	5 cut(s)	443, 909, 1022, 2141, 3638
HpaII	CCGG	9 cut(s)	60, 129, 182, 305, 311, 870, 2153, 2680, 2820
HphI	GGTGA	4 cut(s)	133, 1938, 2669, 2890
Hpy99I	CGWCG	3 cut(s)	334, 2366, 3796
HpyCH4IV	ACGT	8 cut(s)	596, 1270, 2248, 3058, 3168, 3487, 3664, 3684
HpySE526I	ACGT	8 cut(s)	596, 1270, 2248, 3058, 3168, 3487, 3664, 3684
Hsp92I	GRCGYC	1 cut(s)	2248
HspAI	GCGC	3 cut(s)	96, 351, 2288
Kpn2I	TCCGGA	1 cut(s)	2152
KpnI	GGTACC	2 cut(s)	813, 1199
Ksp22I	TGATCA	1 cut(s)	3274
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	7 cut(s)	39, 184, 505, 1346, 1409, 2124, 2899
Lsp1109I	GCAGC	7 cut(s)	286, 484, 1132, 1894, 2297, 2971, 3845
LweI	GCATC	7 cut(s)	327, 796, 937, 1233, 1307, 2438, 2921
MabI	ACCWGGT	1 cut(s)	1948
MaeI	CTAG	8 cut(s)	195, 297, 1382, 1620, 2771, 3156, 3317, 3356
MaeII	ACGT	8 cut(s)	596, 1270, 2248, 3058, 3168, 3487, 3664, 3684
MaeIII	GTNAC	7 cut(s)	1472, 1696, 2135, 2446, 2852, 3328, 3749
MbiI	CCGCTC	1 cut(s)	34
MfeI	CAATTG	3 cut(s)	341, 651, 864
MflI	RGATCY	1 cut(s)	1257
MhlI	GDGCHC	6 cut(s)	202, 426, 1390, 1842, 2817, 3254
MlsI	TGGCCA	1 cut(s)	3026
MluNI	TGGCCA	1 cut(s)	3026
MlyI	GAGTC	8 cut(s)	381, 1022, 1219, 2030, 2033, 3200, 3347, 3512
MmeI	TCCRAC	9 cut(s)	176, 353, 811, 967, 1395, 2980, 3022, 3067, 3640
Mox20I	TGGCCA	1 cut(s)	3026
Mph1103I	ATGCAT	2 cut(s)	3081, 3624
MroI	TCCGGA	1 cut(s)	2152
MroXI	GAANNNNTTC	1 cut(s)	3049
MscI	TGGCCA	1 cut(s)	3026
MslI	CAYNNNNRTG	2 cut(s)	1433, 2486
Msp20I	TGGCCA	1 cut(s)	3026
MspA1I	CMGCKG	3 cut(s)	2564, 3805, 3836
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	9 cut(s)	60, 129, 182, 305, 311, 870, 2153, 2680, 2820
MspR9I	CCNGG	5 cut(s)	871, 1950, 2638, 2821, 2928
MunI	CAATTG	3 cut(s)	341, 651, 864
Mva1269I	GAATGC	2 cut(s)	49, 1936
MvaI	CCWGG	3 cut(s)	1950, 2638, 2928
MvnI	CGCG	1 cut(s)	108
NciI	CCSGG	2 cut(s)	871, 2821
NcoI	CCATGG	2 cut(s)	1428, 2481
NmeAIII	GCCGAG	1 cut(s)	1265
NmuCI	GTSAC	2 cut(s)	2135, 3749
NsbI	TGCGCA	1 cut(s)	97
NsiI	ATGCAT	2 cut(s)	3081, 3624
NspI	RCATGY	3 cut(s)	984, 2500, 3079
PaeR7I	CTCGAG	1 cut(s)	1833
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	714
PctI	GAATGC	2 cut(s)	49, 1936
PdmI	GAANNNNTTC	1 cut(s)	3049
PflFI	GACNNNGTC	2 cut(s)	7, 2360
PfoI	TCCNGGA	1 cut(s)	2926
PinAI	ACCGGT	1 cut(s)	2679
Ple19I	CGATCG	1 cut(s)	630
PleI	GAGTC	8 cut(s)	381, 1022, 1218, 2030, 2032, 3200, 3346, 3511
PmaCI	CACGTG	1 cut(s)	1271
PmlI	CACGTG	1 cut(s)	1271
PpsI	GAGTC	8 cut(s)	381, 1022, 1218, 2030, 2032, 3200, 3346, 3511
Ppu21I	YACGTR	1 cut(s)	1271
PpuMI	RGGWCCY	1 cut(s)	1829
Psp124BI	GAGCTC	2 cut(s)	426, 1842
Psp1406I	AACGTT	2 cut(s)	596, 3684
Psp5II	RGGWCCY	1 cut(s)	1829
Psp6I	CCWGG	3 cut(s)	1948, 2636, 2926
PspCI	CACGTG	1 cut(s)	1271
PspFI	CCCAGC	4 cut(s)	37, 1205, 2555, 2810
PspGI	CCWGG	3 cut(s)	1948, 2636, 2926
PspOMI	GGGCCC	1 cut(s)	2813
PspPPI	RGGWCCY	1 cut(s)	1829
PstI	CTGCAG	2 cut(s)	679, 1549
PsuI	RGATCY	1 cut(s)	1257
PsyI	GACNNNGTC	2 cut(s)	7, 2360
PvuI	CGATCG	1 cut(s)	630
PvuII	CAGCTG	2 cut(s)	2564, 3836
RseI	CAYNNNNRTG	2 cut(s)	1433, 2486
SacI	GAGCTC	2 cut(s)	426, 1842
SapI	GCTCTTC	1 cut(s)	714
ScaI	AGTACT	1 cut(s)	1762
SchI	GAGTC	8 cut(s)	381, 1022, 1219, 2030, 2033, 3200, 3347, 3512
ScrFI	CCNGG	5 cut(s)	871, 1950, 2638, 2821, 2928
SduI	GDGCHC	6 cut(s)	202, 426, 1390, 1842, 2817, 3254
SexAI	ACCWGGT	1 cut(s)	1948
SfaNI	GCATC	7 cut(s)	327, 796, 937, 1233, 1307, 2438, 2921
SfcI	CTRYAG	4 cut(s)	675, 1545, 3495, 3837
SfiI	GGCCNNNNNGGCC	1 cut(s)	2821
Sfr274I	CTCGAG	1 cut(s)	1833
SinI	GGWCC	4 cut(s)	632, 1139, 1829, 3626
SlaI	CTCGAG	1 cut(s)	1833
SmiMI	CAYNNNNRTG	2 cut(s)	1433, 2486
SmlI	CTYRAG	3 cut(s)	278, 1805, 1833
SmoI	CTYRAG	3 cut(s)	278, 1805, 1833
SpeI	ACTAGT	1 cut(s)	3155
SseBI	AGGCCT	1 cut(s)	301
SspMI	CTAG	8 cut(s)	195, 297, 1382, 1620, 2771, 3156, 3317, 3356
SstI	GAGCTC	2 cut(s)	426, 1842
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	5 cut(s)	869, 1948, 2636, 2819, 2926
StyI	CCWWGG	5 cut(s)	296, 1381, 1428, 2481, 2973
TaiI	ACGT	8 cut(s)	599, 1273, 2251, 3061, 3171, 3490, 3667, 3687
TaqII	GACCGA	1 cut(s)	441
TatI	WGTACW	5 cut(s)	82, 1533, 1760, 2232, 3175
TauI	GCSGC	7 cut(s)	34, 49, 59, 181, 208, 2745, 3464
TscAI	CASTG	5 cut(s)	416, 684, 2098, 3022, 3620
TseFI	GTSAC	2 cut(s)	2135, 3749
TseI	GCWGC	7 cut(s)	274, 497, 1120, 1882, 2285, 2984, 3833
Tsp45I	GTSAC	2 cut(s)	2135, 3749
TspGWI	ACGGA	3 cut(s)	1582, 2312, 3809
TspRI	CASTG	5 cut(s)	416, 684, 2098, 3022, 3620
Tth111I	GACNNNGTC	2 cut(s)	7, 2360
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	4 cut(s)	632, 1139, 1829, 3626
XagI	CCTNNNNNAGG	1 cut(s)	3495
XapI	RAATTY	7 cut(s)	1145, 1189, 1376, 1550, 1615, 1850, 3765
XbaI	TCTAGA	1 cut(s)	3316
XceI	RCATGY	3 cut(s)	984, 2500, 3079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2193
XhoI	CTCGAG	1 cut(s)	1833
XmaJI	CCTAGG	2 cut(s)	296, 1381
XmnI	GAANNNNTTC	1 cut(s)	3049
XspI	CTAG	8 cut(s)	195, 297, 1382, 1620, 2771, 3156, 3317, 3356
ZraI	GACGTC	1 cut(s)	2249
ZrmI	AGTACT	1 cut(s)	1762
Zsp2I	ATGCAT	2 cut(s)	3081, 3624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.