Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Reverse (-)

6729517 .. 6734306

Gene Structure 4790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGGAAGGATATGTGCCGGTCCAAAAAAAAAAAAAGGAAAGGCGGTAAAGGAAAGACGCGGGAATATGGCGGAGATTTCGTTGGGTCCCTTTCCCTCTCCGTTTCTCACTCTCAATCTTCCCCAGTTTCCCTCCTCCGCCAGATCTCACTCCATGTCGACTCTCCGCTCCCAAAACCCTAACCCTTCCTGCTCCTCCATTCCCAATCCCACCCCCGCCGCCCAGCCTTCCCTCCTCGTCTTCTCCGGCGGCACCGCCTTCAACGGCGTCGTCGAGGACCTCAAGACTTTCACCACCCGCGTCGCCCACGTCCTTCCCGTTTCCGACGACGGAGGCAGCACCGCCGAGATCGTCCGCGTCCTCGGTGGTCCGGCCGTCGGAGATATACGGTCCAGGTGCTTGAGATTGGCCGATAAAAGCACCTCCGAGGCCGTCGCCGTCCGGCAATTGCTCGGTCATCGTTTACCGCTTGATGCACGCCAAGCCAAATCCGAATGGTATGATATTGTGGAAGGAGAACACTCTTTATGGACAGGAGTTTCAAAGCCCTATAGGGAAACCATTCGAGCTTTTCTGGTTTATTTTCAGAATCAGATTCTCCGTCGATCTGATGAATCGTTTTGCTTCAGTAATGGCAGCATTGGGAATTTCTTCTTTGCAGGAGCACGTGTATTTTTTCGGTCTTTGGATGCTGCAATATTTTTGTTTTCTCGAGTGTCAGATATCCCATCAGAAAGTCTGGTTCTTCCAGTGATTTCTACTAATGACAGGCTTACATTAGGATGTGAATTATCGGATGGAACTATAATACGAGGGCAGAATGAAATTTCTCATCCAACCAATGGATATATGGCACTTGTCAATAAGGGAAGCTCTTCAGCTCCTGCACTCTCTTCGAGGATAAAGAGGGTATTCTACATGTCAAGTGAGGGCCAAAACTTGCTTCATGAGGTCTTCCCTGCTCCAAACCCAGCTGTGATGGATCAGCTACGTAATGTGGATTGCATTGTTTATGCCATGGGTTCTCTCTTTACTTCCGTTTGCCCATCACTGGTATTAATTGGCATTGGGGAGATTATATCTTCAAGGTCCTGCCCCAAGGTACTTTTGTTAAATGGTACCCATGATCGAGAGACAAGTGGCTTCTCAGCTTCTTGCTTTGTAACTGCTATTACAGATGCACTAAATCGAACATATGGAGCCCCTCATAACTGTCTCAAAAACCTTCCCAGTCATTATATCAATACCCTATTAGTGCCCCAAGATGGTGAGATACCTGTTAATGTTCAATGCTTAGCTGACGAAGGAATTTTTGAAGTGATTGTTGTTGACTCTGTACATGATCCAAAAGTAGGTGTGGTATTTGACCCCAAGTCGTTAATACAAGCCCTTGATGATTTGATAGGCAGACACATGCCTACAAATGTTAAGGTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

479

Amino Acids

51.92

Weight (kDa)

8.25

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CofD	PF01933	80 - 426	1e-38	2-phospho-L-lactate transferase CofD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1118
AccB1I	GGYRCC	2 cut(s)	251, 1118
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	3 cut(s)	60, 300, 357
AclWI	GGATC	2 cut(s)	990, 1337
AcoI	YGGCCR	2 cut(s)	372, 408
AcsI	RAATTY	3 cut(s)	646, 825, 1308
AcuI	CTGAAG	2 cut(s)	610, 861
AcvI	CACGTG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	1104, 1120, 1338
AfiI	CCNNNNNNNGG	5 cut(s)	377, 842, 1051, 1265, 1352
AflIII	ACRYGT	2 cut(s)	667, 918
AgsI	TTSAA	5 cut(s)	262, 543, 1086, 1289, 1316
AhdI	GACNNNNNGTC	1 cut(s)	1372
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	392
AjuI	GAANNNNNNNTTGG	2 cut(s)	927, 959
AluBI	AGCT	7 cut(s)	569, 873, 881, 974, 988, 1151, 1298
AluI	AGCT	7 cut(s)	569, 873, 881, 974, 988, 1151, 1298
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	2 cut(s)	1127, 1220
AlwI	GGATC	2 cut(s)	990, 1337
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	4 cut(s)	372, 408, 429, 931
ApeKI	GCWGC	3 cut(s)	336, 636, 692
ApoI	RAATTY	3 cut(s)	646, 825, 1308
AseI	ATTAAT	1 cut(s)	1058
Asp700I	GAANNNNTTC	3 cut(s)	561, 650, 874
Asp718I	GGTACC	1 cut(s)	1118
AspS9I	GGNCC	7 cut(s)	20, 86, 277, 368, 390, 931, 1089
AsuHPI	GGTGA	2 cut(s)	283, 1280
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	6 cut(s)	20, 86, 277, 368, 390, 1089
BaeGI	GKGCMC	1 cut(s)	1260
BaeI	ACNNNNGTAYC	2 cut(s)	1094, 1127
BanI	GGYRCC	2 cut(s)	251, 1118
BanII	GRGCYC	1 cut(s)	1204
BbrPI	CACGTG	1 cut(s)	668
BbsI	GAAGAC	2 cut(s)	232, 946
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	348, 648, 679
BccI	CCATC	5 cut(s)	736, 791, 973, 1054, 1259
BceAI	ACGGC	4 cut(s)	280, 359, 416, 422
BcgI	CGANNNNNNTGC	2 cut(s)	876, 910
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	1127, 1220
BfmI	CTRYAG	1 cut(s)	550
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	5 cut(s)	219, 250, 337, 637, 693
BlpI	GCTNAGC	1 cut(s)	1294
BlsI	GCNGC	5 cut(s)	220, 251, 338, 638, 694
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	6 cut(s)	20, 86, 277, 368, 390, 1089
BmeRI	GACNNNNNGTC	1 cut(s)	1372
BmeT110I	CYCGRG	1 cut(s)	711
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	7 cut(s)	20, 86, 277, 368, 390, 931, 1089
BmiI	GGNNCC	5 cut(s)	87, 88, 253, 1120, 1201
BmrFI	CCNGG	1 cut(s)	394
BmrI	ACTGGG	2 cut(s)	118, 1224
BmsI	GCATC	3 cut(s)	463, 679, 1168
BmuI	ACTGGG	2 cut(s)	118, 1224
BpiI	GAAGAC	2 cut(s)	232, 946
Bpu1102I	GCTNAGC	1 cut(s)	1294
BpuEI	CTTGAG	2 cut(s)	266, 421
BsaAI	YACGTR	2 cut(s)	668, 992
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	361, 426, 1017, 1098
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 654, 684
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 842, 1051, 1265, 1352
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	124, 749, 1056, 1230
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	4 cut(s)	361, 426, 1017, 1098
BseGI	GGATG	4 cut(s)	694, 788, 802, 832
BseLI	CCNNNNNNNGG	5 cut(s)	377, 842, 1051, 1265, 1352
BseMII	CTCAG	1 cut(s)	1161
BseNI	ACTGG	4 cut(s)	124, 749, 1056, 1230
BseRI	GAGGAG	3 cut(s)	124, 184, 224
BseSI	GKGCMC	1 cut(s)	1260
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	348, 648, 679
BseYI	CCCAGC	2 cut(s)	222, 970
BsgI	GTGCAG	1 cut(s)	870
Bsh1236I	CGCG	3 cut(s)	60, 300, 357
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	374, 410, 431, 933
BshNI	GGYRCC	2 cut(s)	251, 1118
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	4 cut(s)	18, 246, 371, 442
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	5 cut(s)	377, 842, 1051, 1265, 1352
BsmAI	GTCTC	2 cut(s)	1127, 1220
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	4 cut(s)	374, 410, 431, 933
BsoBI	CYCGRG	1 cut(s)	711
Bsp1286I	GDGCHC	3 cut(s)	667, 1204, 1260
Bsp1407I	TGTACA	1 cut(s)	1336
Bsp143I	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
Bsp1720I	GCTNAGC	1 cut(s)	1294
Bsp19I	CCATGG	1 cut(s)	1017
BspANI	GGCC	4 cut(s)	374, 410, 431, 933
BspCNI	CTCAG	1 cut(s)	1160
BspFNI	CGCG	3 cut(s)	60, 300, 357
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	5 cut(s)	87, 88, 253, 1120, 1201
BspPI	GGATC	2 cut(s)	990, 1337
BspQI	GCTCTTC	1 cut(s)	880
BspT107I	GGYRCC	2 cut(s)	251, 1118
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	1336
BsrI	ACTGG	4 cut(s)	124, 749, 1056, 1230
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	361, 426, 1017, 1098
BssMI	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	1017, 1098
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	390, 1214
Bst6I	CTCTTC	2 cut(s)	880, 898
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	1336
BstBAI	YACGTR	2 cut(s)	668, 992
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	1147, 1294
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	4 cut(s)	694, 788, 802, 832
BstFNI	CGCG	3 cut(s)	60, 300, 357
BstKTI	GATC	6 cut(s)	146, 351, 608, 985, 1129, 1345
BstMAI	GTCTC	2 cut(s)	1127, 1220
BstMBI	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	2 cut(s)	922, 1417
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	550
BstSLI	GKGCMC	1 cut(s)	1260
BstSNI	TACGTA	1 cut(s)	992
BstUI	CGCG	3 cut(s)	60, 300, 357
BstV1I	GCAGC	3 cut(s)	348, 648, 679
BstV2I	GAAGAC	2 cut(s)	232, 946
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	374, 410, 431, 933
BtgI	CCRYGG	1 cut(s)	1017
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	694, 788, 802, 832
BtsIMutI	CAGTG	2 cut(s)	756, 1049
Cac8I	GCNNGC	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	7 cut(s)	20, 86, 277, 368, 390, 931, 1089
CseI	GACGC	4 cut(s)	66, 256, 289, 346
Csp6I	GTAC	3 cut(s)	1103, 1119, 1337
CviAII	CATG	7 cut(s)	154, 919, 947, 1018, 1124, 1340, 1414
CviQI	GTAC	3 cut(s)	1103, 1119, 1337
DdeI	CTNAG	2 cut(s)	1147, 1294
DpnI	GATC	6 cut(s)	145, 350, 607, 984, 1128, 1344
DpnII	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
DriI	GACNNNNNGTC	1 cut(s)	1372
EaeI	YGGCCR	2 cut(s)	372, 408
EagI	CGGCCG	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	880, 898
Eam1105I	GACNNNNNGTC	1 cut(s)	1372
EarI	CTCTTC	2 cut(s)	880, 898
EciI	GGCGGA	2 cut(s)	86, 127
EclXI	CGGCCG	1 cut(s)	372
Eco105I	TACGTA	1 cut(s)	992
Eco130I	CCWWGG	2 cut(s)	1017, 1098
Eco24I	GRGCYC	1 cut(s)	1204
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	6 cut(s)	20, 86, 277, 368, 390, 1089
Eco52I	CGGCCG	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	610, 861
Eco72I	CACGTG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	711
EcoO109I	RGGNCCY	3 cut(s)	86, 277, 1089
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	1017, 1098
EcoT38I	GRGCYC	1 cut(s)	1204
ErhI	CCWWGG	2 cut(s)	1017, 1098
FaeI	CATG	7 cut(s)	157, 922, 950, 1021, 1127, 1343, 1417
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	7 cut(s)	153, 918, 946, 1017, 1123, 1339, 1413
FauI	CCCGC	3 cut(s)	53, 223, 305
FauNDI	CATATG	1 cut(s)	1195
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	5 cut(s)	219, 250, 337, 637, 693
FokI	GGATG	4 cut(s)	701, 795, 809, 819
FriOI	GRGCYC	1 cut(s)	1204
Fsp4HI	GCNGC	5 cut(s)	219, 250, 337, 637, 693
GluI	GCNGC	5 cut(s)	219, 250, 337, 637, 693
GsaI	CCCAGC	2 cut(s)	226, 974
HaeIII	GGCC	4 cut(s)	374, 410, 431, 933
HapII	CCGG	4 cut(s)	18, 246, 371, 442
HgaI	GACGC	4 cut(s)	66, 256, 289, 346
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	157, 922, 950, 1021, 1127, 1343, 1417
HincII	GTYRAC	2 cut(s)	159, 1330
HindII	GTYRAC	2 cut(s)	159, 1330
HinfI	GANTC	5 cut(s)	160, 589, 595, 614, 1331
HpaII	CCGG	4 cut(s)	18, 246, 371, 442
HphI	GGTGA	2 cut(s)	283, 1280
Hpy166II	GTNNAC	3 cut(s)	159, 464, 1330
Hpy188III	TCNNGA	4 cut(s)	283, 711, 947, 1130
Hpy8I	GTNNAC	3 cut(s)	159, 464, 1330
Hpy99I	CGWCG	8 cut(s)	272, 275, 305, 329, 332, 380, 437, 606
HpyAV	CCTTC	7 cut(s)	195, 237, 268, 323, 506, 1235, 1298
HpyCH4III	ACNGT	2 cut(s)	390, 1214
HpyCH4IV	ACGT	3 cut(s)	309, 667, 991
HpyCH4V	TGCA	6 cut(s)	476, 659, 695, 887, 1005, 1181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	1147, 1294
HpySE526I	ACGT	3 cut(s)	309, 667, 991
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	7 cut(s)	157, 922, 950, 1021, 1127, 1343, 1417
KflI	GGGWCCC	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	1122
Kzo9I	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
LguI	GCTCTTC	1 cut(s)	880
LmnI	GCTCC	6 cut(s)	173, 197, 662, 886, 967, 1199
Lsp1109I	GCAGC	3 cut(s)	348, 648, 679
LweI	GCATC	3 cut(s)	463, 679, 1168
MaeII	ACGT	3 cut(s)	309, 667, 991
MaeIII	GTNAC	1 cut(s)	1162
MalI	GATC	6 cut(s)	145, 350, 607, 984, 1128, 1344
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
MboII	GAAGA	8 cut(s)	110, 232, 643, 737, 867, 885, 946, 1074
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	667, 1204, 1260
MluCI	AATT	6 cut(s)	446, 646, 788, 825, 1059, 1308
MlyI	GAGTC	2 cut(s)	154, 1325
MmeI	TCCRAC	3 cut(s)	348, 358, 860
MroXI	GAANNNNTTC	3 cut(s)	561, 650, 874
MseI	TTAA	5 cut(s)	1058, 1112, 1281, 1379, 1428
MslI	CAYNNNNRTG	1 cut(s)	781
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	4 cut(s)	18, 246, 371, 442
MspR9I	CCNGG	1 cut(s)	394
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	3 cut(s)	60, 300, 357
MwoI	GCNNNNNNNGC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	1017
NdeI	CATATG	1 cut(s)	1195
NdeII	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
NlaIII	CATG	7 cut(s)	157, 922, 950, 1021, 1127, 1343, 1417
NlaIV	GGNNCC	5 cut(s)	87, 88, 253, 1120, 1201
NmeAIII	GCCGAG	1 cut(s)	370
NspI	RCATGY	2 cut(s)	922, 1417
PaeR7I	CTCGAG	1 cut(s)	711
PagI	TCATGA	1 cut(s)	946
PciI	ACATGT	1 cut(s)	918
PciSI	GCTCTTC	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 315
PdmI	GAANNNNTTC	3 cut(s)	561, 650, 874
PfeI	GAWTC	3 cut(s)	589, 595, 614
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	5 cut(s)	220, 251, 338, 638, 694
PleI	GAGTC	2 cut(s)	154, 1325
PmaCI	CACGTG	1 cut(s)	668
PmlI	CACGTG	1 cut(s)	668
PpsI	GAGTC	2 cut(s)	154, 1325
Ppu21I	YACGTR	2 cut(s)	668, 992
PpuMI	RGGWCCY	3 cut(s)	86, 277, 1089
PscI	ACATGT	1 cut(s)	918
PshBI	ATTAAT	1 cut(s)	1058
Psp5II	RGGWCCY	3 cut(s)	86, 277, 1089
Psp6I	CCWGG	1 cut(s)	392
PspCI	CACGTG	1 cut(s)	668
PspFI	CCCAGC	2 cut(s)	222, 970
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	5 cut(s)	87, 88, 253, 1120, 1201
PspPI	GGNCC	7 cut(s)	20, 86, 277, 368, 390, 931, 1089
PspPPI	RGGWCCY	3 cut(s)	86, 277, 1089
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	3 cut(s)	1104, 1120, 1338
RsaNI	GTAC	3 cut(s)	1103, 1119, 1337
RseI	CAYNNNNRTG	1 cut(s)	781
SalI	GTCGAC	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	880
SaqAI	TTAA	5 cut(s)	1058, 1112, 1281, 1379, 1428
SatI	GCNGC	5 cut(s)	219, 250, 337, 637, 693
Sau3AI	GATC	6 cut(s)	143, 348, 605, 982, 1126, 1342
Sau96I	GGNCC	7 cut(s)	20, 86, 277, 368, 390, 931, 1089
SchI	GAGTC	2 cut(s)	154, 1325
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	3 cut(s)	667, 1204, 1260
SfaNI	GCATC	3 cut(s)	463, 679, 1168
SfcI	CTRYAG	1 cut(s)	550
Sfr274I	CTCGAG	1 cut(s)	711
SinI	GGWCC	6 cut(s)	20, 86, 277, 368, 390, 1089
SlaI	CTCGAG	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	781
SmlI	CTYRAG	3 cut(s)	281, 400, 711
SmoI	CTYRAG	3 cut(s)	281, 400, 711
SnaBI	TACGTA	1 cut(s)	992
Sse9I	AATT	6 cut(s)	446, 646, 788, 825, 1059, 1308
SspI	AATATT	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	1017, 1098
TaaI	ACNGT	2 cut(s)	390, 1214
TaiI	ACGT	3 cut(s)	312, 670, 994
TaqI	TCGA	8 cut(s)	158, 273, 565, 604, 712, 896, 1129, 1189
TaqII	GACCGA	2 cut(s)	443, 669
TasI	AATT	6 cut(s)	446, 646, 788, 825, 1059, 1308
TatI	WGTACW	1 cut(s)	1336
TauI	GCSGC	2 cut(s)	221, 252
TfiI	GAWTC	3 cut(s)	589, 595, 614
Tru1I	TTAA	5 cut(s)	1058, 1112, 1281, 1379, 1428
Tru9I	TTAA	5 cut(s)	1058, 1112, 1281, 1379, 1428
TscAI	CASTG	2 cut(s)	756, 1056
TseI	GCWGC	3 cut(s)	336, 636, 692
TspDTI	ATGAA	3 cut(s)	627, 837, 935
TspGWI	ACGGA	4 cut(s)	90, 345, 590, 1027
TspRI	CASTG	2 cut(s)	756, 1056
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	6 cut(s)	20, 86, 277, 368, 390, 1089
VspI	ATTAAT	1 cut(s)	1058
XapI	RAATTY	3 cut(s)	646, 825, 1308
XceI	RCATGY	2 cut(s)	922, 1417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	847
XhoI	CTCGAG	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	158
XmnI	GAANNNNTTC	3 cut(s)	561, 650, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.