Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033377.1

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2830

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033377.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgtatgtctgtcgtactcttagctataaaggagcagagtttgacgttgttgaggcaccactagaagatgaaatgatggaaatgtacaaaaaagcagcagaattttggacagagctgcgagtcgaaatactaacagctactgcctatctcactaatgaaaagcccatttctagtcaagtctggcgattatattgggctagtcatcagcgtttctttagacatatgtgtatgtcggctaaggttcctgctgctgtaagactagcgaagaaagcattgatggatgacaagtgtgtcgtaattggccttcagagtactggagaggcacgaactgaagaagctgtgactaaatatggtcttgagcttgatgattttatttcgggacctcgagaactgttgctgaaatttgttgaagaaaactatcctttgcctgaaaagcctgatcctgtcacaggagaagaaagtgtaaaggagcttcaacggaagaggcactcagcaagtcctggtgtttcgatgaaagggagagtgaggaaagttgcaaaagtgcaaccgccaattgataacgaaagtgacgaagaatctgaaactgattctgctgttgaatctactgaatcagatgatgagtttcaaatctgtgaaatctgcaatgctgaaacggaaagaaagaaattgctccactgttcctgttgtggccaactggtccatgctgaatgccttatcccacctgtgatagatgaggtatcagaagattggtcttgtcattcgtgcaaggaaaaaacagatgaatatcttcaacggagagagcagtatatagctgaattgaagaagaggtatgaagcagctttggagcgtaagtcaaaaattctggggataattcgttccttggatcttccaaacaatcctttggacgatatcattgatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

307

Amino Acids

35.16

Weight (kDa)

5.0

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	2 cut(s)	434, 891
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	101, 401, 858
AcuI	CTGAAG	2 cut(s)	290, 351
AfaI	GTAC	3 cut(s)	16, 86, 313
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	6 cut(s)	410, 476, 599, 626, 791, 820
AjnI	CCWGG	1 cut(s)	499
AloI	GAACNNNNNNTCC	2 cut(s)	859, 891
AluBI	AGCT	8 cut(s)	24, 115, 137, 338, 361, 472, 812, 839
AluI	AGCT	8 cut(s)	24, 115, 137, 338, 361, 472, 812, 839
AlwI	GGATC	2 cut(s)	434, 891
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	301, 688
ApeKI	GCWGC	4 cut(s)	95, 115, 248, 836
ApoI	RAATTY	3 cut(s)	101, 401, 858
Asp700I	GAANNNNTTC	1 cut(s)	786
AspS9I	GGNCC	2 cut(s)	380, 697
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	2 cut(s)	380, 697
BalI	TGGCCA	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	4 cut(s)	288, 320, 456, 488
BbvI	GCAGC	4 cut(s)	102, 107, 235, 848
BccI	CCATC	2 cut(s)	70, 271
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	1 cut(s)	916
BfaI	CTAG	4 cut(s)	62, 171, 198, 260
BisI	GCNGC	4 cut(s)	96, 116, 249, 837
BlsI	GCNGC	4 cut(s)	97, 117, 250, 838
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	2 cut(s)	380, 697
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	380, 697
BmiI	GGNNCC	3 cut(s)	57, 243, 381
BmrFI	CCNGG	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	836, 866
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	319, 699
Bse3DI	GCAATG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	879
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	319, 699
BseXI	GCAGC	4 cut(s)	102, 107, 235, 848
BshFI	GGCC	2 cut(s)	303, 690
BshNI	GGYRCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	303, 690
BsoBI	CYCGRG	1 cut(s)	384
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	439, 883, 916
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	2 cut(s)	303, 690
BspCNI	CTCAG	1 cut(s)	503
BspLI	GGNNCC	3 cut(s)	57, 243, 381
BspPI	GGATC	2 cut(s)	434, 891
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	319, 699
BssECI	CCNNGG	1 cut(s)	879
BssMI	GATC	3 cut(s)	439, 883, 916
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	393, 677
Bst6I	CTCTTC	2 cut(s)	476, 818
BstAUI	TGTACA	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	20, 237, 490
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	442, 886, 919
BstMBI	GATC	3 cut(s)	439, 883, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 433
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstV1I	GCAGC	4 cut(s)	102, 107, 235, 848
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuRI	GGCC	2 cut(s)	303, 690
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	673
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	380, 697
Csp6I	GTAC	3 cut(s)	15, 85, 312
CviAII	CATG	1 cut(s)	701
CviQI	GTAC	3 cut(s)	15, 85, 312
DdeI	CTNAG	3 cut(s)	20, 237, 490
DpnI	GATC	3 cut(s)	441, 885, 918
DpnII	GATC	3 cut(s)	439, 883, 916
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	2 cut(s)	476, 818
EarI	CTCTTC	2 cut(s)	476, 818
Eco130I	CCWWGG	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	380, 697
Eco57I	CTGAAG	2 cut(s)	290, 351
Eco88I	CYCGRG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	879
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	1 cut(s)	704
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	4 cut(s)	96, 116, 249, 837
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	96, 116, 249, 837
FspBI	CTAG	4 cut(s)	62, 171, 198, 260
GluI	GCNGC	4 cut(s)	96, 116, 249, 837
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	303, 690
Hin1II	CATG	1 cut(s)	704
HinfI	GANTC	5 cut(s)	120, 575, 587, 599, 608
Hpy188I	TCNGA	4 cut(s)	309, 580, 613, 742
Hpy188III	TCNNGA	3 cut(s)	356, 378, 386
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	393, 677
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	536, 544, 642, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 433
HpyF3I	CTNAG	3 cut(s)	20, 237, 490
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	704
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	3 cut(s)	439, 883, 916
LmnI	GCTCC	4 cut(s)	32, 469, 675, 844
Lsp1109I	GCAGC	4 cut(s)	102, 107, 235, 848
MaeI	CTAG	4 cut(s)	62, 171, 198, 260
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	340, 445, 566
MalI	GATC	3 cut(s)	441, 885, 918
MboI	GATC	3 cut(s)	439, 883, 916
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	883
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	8 cut(s)	101, 297, 401, 552, 665, 815, 858, 870
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	46, 313, 393, 477, 519, 727, 819
Mox20I	TGGCCA	1 cut(s)	690
MroXI	GAANNNNTTC	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	269, 433
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	3 cut(s)	439, 883, 916
NlaIII	CATG	1 cut(s)	704
NlaIV	GGNNCC	3 cut(s)	57, 243, 381
NmuCI	GTSAC	3 cut(s)	340, 445, 566
PaeR7I	CTCGAG	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	4 cut(s)	575, 587, 599, 608
PkrI	GCNGC	4 cut(s)	97, 117, 250, 838
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	57, 243, 381
PspPI	GGNCC	2 cut(s)	380, 697
PspPPI	RGGWCCY	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	3 cut(s)	16, 86, 313
RsaNI	GTAC	3 cut(s)	15, 85, 312
SatI	GCNGC	4 cut(s)	96, 116, 249, 837
Sau3AI	GATC	3 cut(s)	439, 883, 916
Sau96I	GGNCC	2 cut(s)	380, 697
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	2 cut(s)	380, 697
SlaI	CTCGAG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	356, 384
SmoI	CTYRAG	2 cut(s)	356, 384
Sse9I	AATT	8 cut(s)	101, 297, 401, 552, 665, 815, 858, 870
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	4 cut(s)	62, 171, 198, 260
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	2 cut(s)	393, 677
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	123, 385, 509
TasI	AATT	8 cut(s)	101, 297, 401, 552, 665, 815, 858, 870
TatI	WGTACW	2 cut(s)	84, 311
TfiI	GAWTC	4 cut(s)	575, 587, 599, 608
TscAI	CASTG	1 cut(s)	680
TseFI	GTSAC	3 cut(s)	340, 445, 566
TseI	GCWGC	4 cut(s)	95, 115, 248, 836
Tsp45I	GTSAC	3 cut(s)	340, 445, 566
TspDTI	ATGAA	5 cut(s)	84, 171, 527, 795, 846
TspGWI	ACGGA	3 cut(s)	493, 668, 808
TspRI	CASTG	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	380, 697
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	3 cut(s)	101, 401, 858
XhoI	CTCGAG	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	4 cut(s)	62, 171, 198, 260
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.