Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Reverse (-)

18228284 .. 18235549

Gene Structure 7266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGTGTATGTCGGCTAAGGTTCCTGCTGCTGTAAGACTAGCGAAGAAAGCATTGATGGATGACAAGTGTGTCGTAATTGGCCTTCAGAGTACTGGAGAGGCACGAACTGAAGAAGCTGTGACTAAATATGGTCTTGAGCTTGATGATTTTATTTCGGGACCTCGAGAACTGTTGCTGAAATTTGTTGAAGAAAACTATCCTTTGCCTGAAAAGCCTGATCCTGTCACAGGAGAAGAAAGTGTAAAGGAGCTTCAACGGAAGAGGCACTCAGCAAGTCCTGGTGTTTCGATGAAAGGGAGAGTGAGGAAAGTTGCAAAAGTGCAACCGCCAATGGATAATGAAAGTGACGAAGAATCTGAAACTGATTCTGCTGTTGAATCTACTGAATCAGATGATGAGTTTCAAATCTGTGAAATCTGCAATGCTGAGACGGAAAGAAAGAAATTGCTCCACTGTTCCTGTTGTGGCCAACTGGTCCATGCTGAATGCCTTGTCCCACCTGTGATAGATGAGGTATCAGAAGATTGGTCATGTCATTCGTGCAAGGAAAAAACAGATGAATATCTTCAACGGAGAGAGCAGTATATAGCTGAATTGAAGAAGAGGAAGGAGGTTTCCATGGAGATGGTCAACATGCATGAGAAACAGCTTTTCATGGATGGCAAAAAGTTTGTTGCTATAATTTCTGAGGCTGGGTCAGCTGGTGTTTCTTTGCAGGCAGATAGAAGAGCTGTAAATCAGAAAAGAAGGGTACATCTAACCCTGGAACTTCCTTGGAGTGCCGATCGAGCGATTCAACAGTTTGGAAGAACTCACCGGTCAAATCAAGCTTCTGCTCCTGAATACAGGCTACTCTTTACTAACCTCGGTGGAGAACGTCGGTTTGCATCCATTGTTGCAAAGAGATTACAATCTCTTGGAGCTCTAACTCAGGGTGATCGCAGGGCAGGCCCATCATTGAGTGCCTATAATTATGATAGTGCGTATGGAAAGAAGGCATTAATATTGATGTATAGAGGAATATTGGAGCAGGAAGCTCTGCCTGTTGTACCACCAGGATGTTCATCTGAAGACCCGGAGACAATCCAAGATTTTATTGAGGAGGCAAGAGCTGCTCTTGTGTTTGTAGGAATAATTAGGGATGCTAAAGATTCTGGCAAGCTCTCTGGCCGTGTAGCTGATTCAGACATGCATGACCACAGGCTGTTCGAGTTATTTGTTAGTATTTTGGATCTTCTTGTCCATAATGCACGCATTGAAGGAAATCTTGACTCTGGGATTGTTGATATGAAAGCTAATGTTATAGAGCTACAAGGAACTCCAAAGACTGTCCATGTTGATGAAATGTCTGGAGCTTCAACTGTGCTCTTCACTTTTACCCTGGATCGTGGCATCACATGGGAGTCTGCAAGTGCCATGCTTGAAGGTAAACAAGAGGAGGGGCTTAGTTGTGCCCATGATGGCTTCTATGAATCTAGAAGGGAGTGGATGGGGAGGCTAGTCCGTCCGGCAGTTGGAGAGTCAGTGAGAGAAATGTCTCTGTCTGAGCTAAAAAGCAAATACAGAAGAACATCATCGTTGGAGAAGGCTCGCAGCGGTTGGAATGATGAATATGAAGTTTCATCCAAACAGTGCATGCATGGTCCCAAGTGTAAGGTTGGCAGCTTCTGTACTGTTGGCAGAAGACTGCAGGAAGTAAATGTATTAGGTGGTCTCATTCTTCCTGTATGGGGCACAATTGAGAAAGCTCTTTCTAAGCAGTCCCGGCAAAGCCACAGGCGGCTACGTGTTGTGCGTATAGAAACCACAACAGATAACCAGAGAATCGTTGGTCTGTTTGTCCCCAATGCAGCTGTTGAAGCCGTACTTCAAGATTTTGCATGGGTTCAAGAAATTGAAGATTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

636

Amino Acids

71.15

Weight (kDa)

5.78

Isoelectric Point (pI)

61.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	137 - 181	7.9e-06	PHD-finger
Helicase_C_4	PF13871	192 - 429	6e-75	C-terminal domain on Strawberry notch homologue
SBNO	PF25373	491 - 562	6.9e-12	SBNO alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AciI	CCGC	3 cut(s)	326, 1596, 1780
AclWI	GGATC	3 cut(s)	212, 1239, 1392
AcoI	YGGCCR	2 cut(s)	466, 1168
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	3 cut(s)	68, 129, 1089
AfaI	GTAC	5 cut(s)	91, 753, 1050, 1672, 1866
AfiI	CCNNNNNNNGG	3 cut(s)	227, 1514, 1730
AflIII	ACRYGT	1 cut(s)	1786
AgeI	ACCGGT	1 cut(s)	816
AjnI	CCWGG	4 cut(s)	277, 762, 1054, 1380
Alw21I	GWGCWC	2 cut(s)	925, 1368
Alw26I	GTCTC	4 cut(s)	422, 1073, 1542, 1718
AlwI	GGATC	3 cut(s)	212, 1239, 1392
AlwNI	CAGNNNCTG	1 cut(s)	1668
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	4 cut(s)	79, 466, 949, 1168
ApeKI	GCWGC	5 cut(s)	26, 1112, 1593, 1662, 1850
ApoI	RAATTY	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	1001
AsiGI	ACCGGT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	4 cut(s)	158, 475, 950, 1643
AsuC2I	CCSGG	2 cut(s)	1076, 1765
AsuHPI	GGTGA	2 cut(s)	806, 947
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	3 cut(s)	158, 475, 1643
BaeGI	GKGCMC	2 cut(s)	1456, 1736
BalI	TGGCCA	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	925
BarI	GAAGNNNNNNTAC	4 cut(s)	66, 98, 234, 266
BbsI	GAAGAC	2 cut(s)	1077, 1690
Bbv12I	GWGCWC	2 cut(s)	925, 1368
BbvI	GCAGC	5 cut(s)	13, 1099, 1605, 1674, 1862
BccI	CCATC	6 cut(s)	49, 619, 653, 961, 1454, 1483
BceAI	ACGGC	2 cut(s)	1155, 1847
BciT130I	CCWGG	4 cut(s)	279, 764, 1056, 1382
BcnI	CCSGG	2 cut(s)	1076, 1765
BcoDI	GTCTC	4 cut(s)	422, 1073, 1542, 1718
BfaI	CTAG	3 cut(s)	38, 1476, 1499
BfmI	CTRYAG	1 cut(s)	1688
BisI	GCNGC	6 cut(s)	27, 1113, 1594, 1663, 1781, 1851
BlsI	GCNGC	6 cut(s)	28, 1114, 1595, 1664, 1782, 1852
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	6 cut(s)	279, 764, 1056, 1076, 1382, 1765
Bme18I	GGWCC	3 cut(s)	158, 475, 1643
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	4 cut(s)	158, 475, 950, 1643
BmiI	GGNNCC	3 cut(s)	21, 159, 1645
BmrFI	CCNGG	6 cut(s)	279, 764, 1056, 1076, 1382, 1765
BmsI	GCATC	3 cut(s)	896, 1132, 1401
BpiI	GAAGAC	2 cut(s)	1077, 1690
BpmI	CTGGAG	2 cut(s)	114, 1371
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	1076, 1765
BsaAI	YACGTR	1 cut(s)	1787
BsaBI	GATNNNNATC	3 cut(s)	561, 910, 1063
BsaI	GGTCTC	1 cut(s)	1718
BsaJI	CCNNGG	5 cut(s)	618, 762, 773, 865, 1380
BsaWI	WCCGGW	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	1509, 1539
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 1514, 1730
Bse118I	RCCGGY	1 cut(s)	816
Bse1I	ACTGG	2 cut(s)	97, 477
Bse3DI	GCAATG	1 cut(s)	427
Bse8I	GATNNNNATC	3 cut(s)	561, 910, 1063
BseBI	CCWGG	4 cut(s)	279, 764, 1056, 1382
BseDI	CCNNGG	5 cut(s)	618, 762, 773, 865, 1380
BseGI	GGATG	7 cut(s)	64, 664, 887, 1064, 1147, 1494, 1622
BseJI	GATNNNNATC	3 cut(s)	561, 910, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	227, 1514, 1730
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	5 cut(s)	282, 417, 678, 944, 1536
BseNI	ACTGG	2 cut(s)	97, 477
BseRI	GAGGAG	2 cut(s)	1115, 1451
BseSI	GKGCMC	2 cut(s)	1456, 1736
BseXI	GCAGC	5 cut(s)	13, 1099, 1605, 1674, 1862
BseYI	CCCAGC	1 cut(s)	692
Bsh1285I	CGRYCG	1 cut(s)	787
BshFI	GGCC	4 cut(s)	81, 468, 951, 1170
BshTI	ACCGGT	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	787
BsiHKAI	GWGCWC	2 cut(s)	925, 1368
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	4 cut(s)	817, 1076, 1508, 1765
BslFI	GGGAC	5 cut(s)	171, 479, 1629, 1747, 1826
BslI	CCNNNNNNNGG	3 cut(s)	227, 1514, 1730
BsmAI	GTCTC	4 cut(s)	422, 1073, 1542, 1718
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	5 cut(s)	171, 479, 1629, 1747, 1826
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	4 cut(s)	81, 468, 951, 1170
Bso31I	GGTCTC	1 cut(s)	1718
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	4 cut(s)	925, 1368, 1456, 1736
Bsp143I	GATC	5 cut(s)	217, 784, 937, 1231, 1384
Bsp19I	CCATGG	1 cut(s)	618
BspACI	CCGC	3 cut(s)	326, 1596, 1780
BspANI	GGCC	4 cut(s)	81, 468, 951, 1170
BspCNI	CTCAG	5 cut(s)	281, 418, 679, 943, 1537
BspLI	GGNNCC	3 cut(s)	21, 159, 1645
BspMAI	CTGCAG	1 cut(s)	1692
BspPI	GGATC	3 cut(s)	212, 1239, 1392
BspQI	GCTCTTC	2 cut(s)	721, 1373
BspTNI	GGTCTC	1 cut(s)	1718
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	816
BsrI	ACTGG	2 cut(s)	97, 477
BssAI	RCCGGY	1 cut(s)	816
BssECI	CCNNGG	5 cut(s)	618, 762, 773, 865, 1380
BssMI	GATC	5 cut(s)	217, 784, 937, 1231, 1384
BssT1I	CCWWGG	2 cut(s)	618, 773
Bst2UI	CCWGG	4 cut(s)	279, 764, 1056, 1382
Bst4CI	ACNGT	8 cut(s)	171, 455, 801, 1330, 1363, 1632, 1675, 1908
Bst6I	CTCTTC	4 cut(s)	254, 596, 721, 1373
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstBAI	YACGTR	1 cut(s)	1787
BstC8I	GCNNGC	6 cut(s)	717, 949, 1160, 1252, 1591, 1637
BstDEI	CTNAG	8 cut(s)	15, 268, 426, 687, 930, 1445, 1545, 1755
BstDSI	CCRYGG	1 cut(s)	618
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	7 cut(s)	64, 664, 887, 1064, 1147, 1494, 1622
BstKTI	GATC	5 cut(s)	220, 787, 940, 1234, 1387
BstMAI	GTCTC	4 cut(s)	422, 1073, 1542, 1718
BstMBI	GATC	5 cut(s)	217, 784, 937, 1231, 1384
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 211, 698, 788, 948, 1112, 1765, 1859
BstNI	CCWGG	4 cut(s)	279, 764, 1056, 1382
BstNSI	RCATGY	3 cut(s)	637, 1192, 1639
BstSCI	CCNGG	6 cut(s)	277, 762, 1054, 1074, 1380, 1763
BstSFI	CTRYAG	1 cut(s)	1688
BstSLI	GKGCMC	2 cut(s)	1456, 1736
BstV1I	GCAGC	5 cut(s)	13, 1099, 1605, 1674, 1862
BstV2I	GAAGAC	2 cut(s)	1077, 1690
BstX2I	RGATCY	1 cut(s)	1231
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	1231
BsuRI	GGCC	4 cut(s)	81, 468, 951, 1170
BtgI	CCRYGG	1 cut(s)	618
BtsCI	GGATG	7 cut(s)	64, 664, 887, 1064, 1147, 1494, 1622
BtsIMutI	CAGTG	3 cut(s)	451, 1530, 1637
Cac8I	GCNNGC	6 cut(s)	717, 949, 1160, 1252, 1591, 1637
CaiI	CAGNNNCTG	1 cut(s)	1668
Cfr10I	RCCGGY	1 cut(s)	816
Cfr13I	GGNCC	4 cut(s)	158, 475, 950, 1643
Csp6I	GTAC	5 cut(s)	90, 752, 1049, 1671, 1865
CspAI	ACCGGT	1 cut(s)	816
CviQI	GTAC	5 cut(s)	90, 752, 1049, 1671, 1865
DdeI	CTNAG	8 cut(s)	15, 268, 426, 687, 930, 1445, 1545, 1755
DpnI	GATC	5 cut(s)	219, 786, 939, 1233, 1386
DpnII	GATC	5 cut(s)	217, 784, 937, 1231, 1384
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	2 cut(s)	466, 1168
Eam1104I	CTCTTC	4 cut(s)	254, 596, 721, 1373
EarI	CTCTTC	4 cut(s)	254, 596, 721, 1373
Ecl136II	GAGCTC	1 cut(s)	923
Eco130I	CCWWGG	2 cut(s)	618, 773
Eco24I	GRGCYC	1 cut(s)	925
Eco31I	GGTCTC	1 cut(s)	1718
Eco47I	GGWCC	3 cut(s)	158, 475, 1643
Eco53kI	GAGCTC	1 cut(s)	923
Eco57I	CTGAAG	3 cut(s)	68, 129, 1089
Eco88I	CYCGRG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	923
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	4 cut(s)	277, 762, 1054, 1380
EcoT14I	CCWWGG	2 cut(s)	618, 773
EcoT22I	ATGCAT	3 cut(s)	639, 1194, 1641
EcoT38I	GRGCYC	1 cut(s)	925
ErhI	CCWWGG	2 cut(s)	618, 773
Esp3I	CGTCTC	1 cut(s)	422
FalI	AAGNNNNNCTT	4 cut(s)	1251, 1283, 1851, 1883
FaqI	GGGAC	5 cut(s)	171, 479, 1629, 1747, 1826
Fnu4HI	GCNGC	6 cut(s)	27, 1113, 1594, 1663, 1781, 1851
FokI	GGATG	7 cut(s)	71, 671, 874, 1071, 1154, 1501, 1609
FriOI	GRGCYC	1 cut(s)	925
Fsp4HI	GCNGC	6 cut(s)	27, 1113, 1594, 1663, 1781, 1851
FspBI	CTAG	3 cut(s)	38, 1476, 1499
GluI	GCNGC	6 cut(s)	27, 1113, 1594, 1663, 1781, 1851
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	2 cut(s)	114, 1371
HaeIII	GGCC	4 cut(s)	81, 468, 951, 1170
HapII	CCGG	4 cut(s)	817, 1076, 1508, 1765
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	828
HpaII	CCGG	4 cut(s)	817, 1076, 1508, 1765
HphI	GGTGA	2 cut(s)	806, 947
Hpy166II	GTNNAC	2 cut(s)	631, 1430
Hpy188I	TCNGA	9 cut(s)	87, 358, 391, 520, 688, 741, 1069, 1186, 1546
Hpy188III	TCNNGA	9 cut(s)	134, 156, 164, 839, 1268, 1350, 1476, 1871, 1889
Hpy8I	GTNNAC	2 cut(s)	631, 1430
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	8 cut(s)	92, 601, 741, 988, 1253, 1418, 1473, 1579
HpyCH4III	ACNGT	8 cut(s)	171, 455, 801, 1330, 1363, 1632, 1675, 1908
HpyCH4IV	ACGT	2 cut(s)	877, 1786
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 211, 698, 788, 948, 1112, 1765, 1859
HpyF3I	CTNAG	8 cut(s)	15, 268, 426, 687, 930, 1445, 1545, 1755
HpySE526I	ACGT	2 cut(s)	877, 1786
Kzo9I	GATC	5 cut(s)	217, 784, 937, 1231, 1384
LguI	GCTCTTC	2 cut(s)	721, 1373
LmnI	GCTCC	6 cut(s)	247, 453, 841, 920, 1027, 1352
Lsp1109I	GCAGC	5 cut(s)	13, 1099, 1605, 1674, 1862
LweI	GCATC	3 cut(s)	896, 1132, 1401
MaeI	CTAG	3 cut(s)	38, 1476, 1499
MaeII	ACGT	2 cut(s)	877, 1786
MaeIII	GTNAC	3 cut(s)	118, 223, 344
MalI	GATC	5 cut(s)	219, 786, 939, 1233, 1386
MboI	GATC	5 cut(s)	217, 784, 937, 1231, 1384
MfeI	CAATTG	1 cut(s)	1737
MflI	RGATCY	1 cut(s)	1231
MhlI	GDGCHC	4 cut(s)	925, 1368, 1456, 1736
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	9 cut(s)	75, 179, 443, 593, 681, 970, 1134, 1737, 1893
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	3 cut(s)	1265, 1412, 1529
MmeI	TCCRAC	3 cut(s)	1495, 1560, 1580
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	3 cut(s)	639, 1194, 1641
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	1 cut(s)	1001
MslI	CAYNNNNRTG	3 cut(s)	623, 1057, 1338
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	3 cut(s)	701, 1596, 1853
MspI	CCGG	4 cut(s)	817, 1076, 1508, 1765
MspR9I	CCNGG	6 cut(s)	279, 764, 1056, 1076, 1382, 1765
MunI	CAATTG	1 cut(s)	1737
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	4 cut(s)	279, 764, 1056, 1382
MwoI	GCNNNNNNNGC	8 cut(s)	47, 211, 698, 788, 948, 1112, 1765, 1859
NciI	CCSGG	2 cut(s)	1076, 1765
NcoI	CCATGG	1 cut(s)	618
NdeII	GATC	5 cut(s)	217, 784, 937, 1231, 1384
NlaIV	GGNNCC	3 cut(s)	21, 159, 1645
NmuCI	GTSAC	3 cut(s)	118, 223, 344
NsiI	ATGCAT	3 cut(s)	639, 1194, 1641
NspI	RCATGY	3 cut(s)	637, 1192, 1639
PaeI	GCATGC	1 cut(s)	1639
PaeR7I	CTCGAG	1 cut(s)	162
PciSI	GCTCTTC	2 cut(s)	721, 1373
PcsI	WCGNNNNNNNCGW	1 cut(s)	1792
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	564
PinAI	ACCGGT	1 cut(s)	816
PkrI	GCNGC	6 cut(s)	28, 1114, 1595, 1664, 1782, 1852
Ple19I	CGATCG	1 cut(s)	787
PleI	GAGTC	3 cut(s)	1265, 1411, 1528
PpsI	GAGTC	3 cut(s)	1265, 1411, 1528
Ppu21I	YACGTR	1 cut(s)	1787
PpuMI	RGGWCCY	1 cut(s)	158
PshBI	ATTAAT	1 cut(s)	1001
Psp124BI	GAGCTC	1 cut(s)	925
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	4 cut(s)	277, 762, 1054, 1380
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	4 cut(s)	277, 762, 1054, 1380
PspN4I	GGNNCC	3 cut(s)	21, 159, 1645
PspPI	GGNCC	4 cut(s)	158, 475, 950, 1643
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	1692
PstNI	CAGNNNCTG	1 cut(s)	1668
PsuI	RGATCY	1 cut(s)	1231
PvuI	CGATCG	1 cut(s)	787
PvuII	CAGCTG	2 cut(s)	701, 1853
RsaI	GTAC	5 cut(s)	91, 753, 1050, 1672, 1866
RsaNI	GTAC	5 cut(s)	90, 752, 1049, 1671, 1865
RseI	CAYNNNNRTG	3 cut(s)	623, 1057, 1338
SacI	GAGCTC	1 cut(s)	925
SapI	GCTCTTC	2 cut(s)	721, 1373
SaqAI	TTAA	1 cut(s)	1001
SatI	GCNGC	6 cut(s)	27, 1113, 1594, 1663, 1781, 1851
Sau3AI	GATC	5 cut(s)	217, 784, 937, 1231, 1384
Sau96I	GGNCC	4 cut(s)	158, 475, 950, 1643
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	3 cut(s)	1265, 1412, 1529
ScrFI	CCNGG	6 cut(s)	279, 764, 1056, 1076, 1382, 1765
SduI	GDGCHC	4 cut(s)	925, 1368, 1456, 1736
SfaNI	GCATC	3 cut(s)	896, 1132, 1401
SfcI	CTRYAG	1 cut(s)	1688
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	3 cut(s)	158, 475, 1643
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	3 cut(s)	623, 1057, 1338
SmlI	CTYRAG	2 cut(s)	134, 162
SmoI	CTYRAG	2 cut(s)	134, 162
SphI	GCATGC	1 cut(s)	1639
Sse9I	AATT	9 cut(s)	75, 179, 443, 593, 681, 970, 1134, 1737, 1893
SsiI	CCGC	3 cut(s)	326, 1596, 1780
SspI	AATATT	2 cut(s)	1005, 1023
SspMI	CTAG	3 cut(s)	38, 1476, 1499
SstI	GAGCTC	1 cut(s)	925
StyD4I	CCNGG	6 cut(s)	277, 762, 1054, 1074, 1380, 1763
StyI	CCWWGG	2 cut(s)	618, 773
TaaI	ACNGT	8 cut(s)	171, 455, 801, 1330, 1363, 1632, 1675, 1908
TaiI	ACGT	2 cut(s)	880, 1789
TaqI	TCGA	4 cut(s)	163, 287, 787, 1209
TasI	AATT	9 cut(s)	75, 179, 443, 593, 681, 970, 1134, 1737, 1893
TatI	WGTACW	2 cut(s)	89, 1670
TauI	GCSGC	1 cut(s)	1783
Tru1I	TTAA	1 cut(s)	1001
Tru9I	TTAA	1 cut(s)	1001
TscAI	CASTG	3 cut(s)	458, 1530, 1637
TseFI	GTSAC	3 cut(s)	118, 223, 344
TseI	GCWGC	5 cut(s)	26, 1112, 1593, 1662, 1850
Tsp45I	GTSAC	3 cut(s)	118, 223, 344
TspGWI	ACGGA	4 cut(s)	271, 446, 586, 1493
TspRI	CASTG	3 cut(s)	458, 1530, 1637
VpaK11BI	GGWCC	3 cut(s)	158, 475, 1643
VspI	ATTAAT	1 cut(s)	1001
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	1475
XceI	RCATGY	3 cut(s)	637, 1192, 1639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1826
XhoI	CTCGAG	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	38, 1476, 1499
ZrmI	AGTACT	1 cut(s)	91
Zsp2I	ATGCAT	3 cut(s)	639, 1194, 1641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.