Protein strawberry notch
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79350 |
| fragaria_vesca | FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 |
| malus_domestica | MD05G1239900.v1.1 MD10G1218000.v1.1 |
| prunus_persica | Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 |
| pyrus_communis | pycom05g21600 pycom10g18380 |
| rosa_chinensis | RchiOBHm_Chr5g0023151 |
| rosa_laevigata | RLG00000032703 |
| rosa_multiflora | Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00056190 |
| rosa_rugosa | Rorug05G0077600 |
| rosa_samantha | Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200 |
| rosa_wichuraiana | Rw5G014760 Rw5G015070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 714 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 116, 383 |
| AatII | GACGTC | 1 cut(s) | 3322 |
| Acc36I | ACCTGC | 3 cut(s) | 61, 714, 1921 |
| AccB1I | GGYRCC | 4 cut(s) | 357, 807, 1111, 1606 |
| AccBSI | CCGCTC | 1 cut(s) | 2603 |
| AccII | CGCG | 3 cut(s) | 113, 347, 1690 |
| AccIII | TCCGGA | 1 cut(s) | 1742 |
| AclWI | GGATC | 8 cut(s) | 91, 275, 286, 292, 557, 2244, 3060, 3213 |
| AcoI | YGGCCR | 2 cut(s) | 2041, 2941 |
| AcuI | CTGAAG | 3 cut(s) | 1200, 1655, 2475 |
| AcyI | GRCGYC | 2 cut(s) | 960, 3319 |
| AdeI | CACNNNGTG | 1 cut(s) | 2702 |
| AflIII | ACRYGT | 3 cut(s) | 1136, 1446, 3655 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3323 |
| AjnI | CCWGG | 8 cut(s) | 58, 186, 198, 208, 1057, 1864, 2821, 3201 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2237, 2269, 3269, 3301 |
| Alw21I | GWGCWC | 3 cut(s) | 174, 1330, 2692 |
| Alw26I | GTCTC | 5 cut(s) | 671, 694, 867, 2503, 3310 |
| AlwI | GGATC | 8 cut(s) | 91, 275, 286, 292, 557, 2244, 3060, 3213 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 160, 566, 1208, 1616 |
| Ama87I | CYCGRG | 3 cut(s) | 167, 180, 1749 |
| Aor13HI | TCCGGA | 1 cut(s) | 1742 |
| ApaI | GGGCCC | 1 cut(s) | 216 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 842, 874 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1152 |
| AspLEI | GCGC | 4 cut(s) | 83, 92, 308, 1690 |
| AsuC2I | CCSGG | 1 cut(s) | 416 |
| AsuHPI | GGTGA | 4 cut(s) | 112, 737, 1157, 2714 |
| AsuII | TTCGAA | 2 cut(s) | 287, 3623 |
| AsuNHI | GCTAGC | 1 cut(s) | 1562 |
| AvaI | CYCGRG | 3 cut(s) | 167, 180, 1749 |
| AvaII | GGWCC | 5 cut(s) | 28, 73, 1055, 1745, 2050 |
| AxyI | CCTNAGG | 1 cut(s) | 444 |
| BaeGI | GKGCMC | 3 cut(s) | 216, 362, 3605 |
| BalI | TGGCCA | 1 cut(s) | 2043 |
| BanI | GGYRCC | 4 cut(s) | 357, 807, 1111, 1606 |
| BanII | GRGCYC | 4 cut(s) | 174, 187, 216, 612 |
| BauI | CACGAG | 1 cut(s) | 1185 |
| BbsI | GAAGAC | 2 cut(s) | 2155, 3559 |
| Bbv12I | GWGCWC | 3 cut(s) | 174, 1330, 2692 |
| BceAI | ACGGC | 5 cut(s) | 289, 368, 1262, 2928, 3650 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1322, 1356, 3220, 3254 |
| BciT130I | CCWGG | 8 cut(s) | 60, 188, 200, 210, 1059, 1866, 2823, 3203 |
| BclI | TGATCA | 2 cut(s) | 2269, 3160 |
| BcnI | CCSGG | 1 cut(s) | 416 |
| BcoDI | GTCTC | 5 cut(s) | 671, 694, 867, 2503, 3310 |
| BfaI | CTAG | 6 cut(s) | 1298, 1427, 1536, 1563, 2684, 3297 |
| BfmI | CTRYAG | 4 cut(s) | 707, 1838, 3378, 3557 |
| BfuAI | ACCTGC | 3 cut(s) | 61, 714, 1921 |
| BlpI | GCTNAGC | 3 cut(s) | 1170, 1201, 1629 |
| BmcAI | AGTACT | 1 cut(s) | 1678 |
| Bme1390I | CCNGG | 9 cut(s) | 60, 188, 200, 210, 416, 1059, 1866, 2823, 3203 |
| Bme18I | GGWCC | 5 cut(s) | 28, 73, 1055, 1745, 2050 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3323 |
| BmeT110I | CYCGRG | 3 cut(s) | 167, 180, 1749 |
| BmiI | GGNNCC | 8 cut(s) | 30, 55, 214, 353, 359, 809, 1113, 1608 |
| BmrFI | CCNGG | 9 cut(s) | 60, 188, 200, 210, 416, 1059, 1866, 2823, 3203 |
| BmtI | GCTAGC | 1 cut(s) | 1566 |
| BoxI | GACNNNNGTC | 1 cut(s) | 683 |
| BpiI | GAAGAC | 2 cut(s) | 2155, 3559 |
| BpmI | CTGGAG | 3 cut(s) | 386, 1701, 3192 |
| Bpu10I | CCTNAGC | 3 cut(s) | 606, 1602, 1947 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1170, 1201, 1629 |
| Bpu14I | TTCGAA | 2 cut(s) | 287, 3623 |
| BpuMI | CCSGG | 1 cut(s) | 416 |
| Bsa29I | ATCGAT | 1 cut(s) | 2461 |
| BsaAI | YACGTR | 4 cut(s) | 1028, 1139, 3219, 3656 |
| BsaBI | GATNNNNATC | 4 cut(s) | 296, 2653, 2677, 2830 |
| BsaHI | GRCGYC | 2 cut(s) | 960, 3319 |
| BsaWI | WCCGGW | 3 cut(s) | 354, 1742, 2842 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 57, 87, 220, 250, 747, 777, 3378, 3408 |
| Bse118I | RCCGGY | 2 cut(s) | 25, 83 |
| Bse1I | ACTGG | 7 cut(s) | 1147, 1213, 1629, 1684, 2052, 2311, 2944 |
| Bse21I | CCTNAGG | 1 cut(s) | 444 |
| Bse3DI | GCAATG | 1 cut(s) | 999 |
| Bse8I | GATNNNNATC | 4 cut(s) | 296, 2653, 2677, 2830 |
| BseAI | TCCGGA | 1 cut(s) | 1742 |
| BseBI | CCWGG | 8 cut(s) | 60, 188, 200, 210, 1059, 1866, 2823, 3203 |
| BseCI | ATCGAT | 1 cut(s) | 2461 |
| BseJI | GATNNNNATC | 4 cut(s) | 296, 2653, 2677, 2830 |
| BseMI | GCAATG | 1 cut(s) | 999 |
| BseMII | CTCAG | 9 cut(s) | 377, 435, 597, 1002, 1215, 1686, 1869, 1961, 1992 |
| BseNI | ACTGG | 7 cut(s) | 1147, 1213, 1629, 1684, 2052, 2311, 2944 |
| BseRI | GAGGAG | 3 cut(s) | 461, 543, 2018 |
| BseSI | GKGCMC | 3 cut(s) | 216, 362, 3605 |
| BsgI | GTGCAG | 3 cut(s) | 89, 617, 1064 |
| Bsh1236I | CGCG | 3 cut(s) | 113, 347, 1690 |
| BshNI | GGYRCC | 4 cut(s) | 357, 807, 1111, 1606 |
| BshVI | ATCGAT | 1 cut(s) | 2461 |
| BsiHKAI | GWGCWC | 3 cut(s) | 174, 1330, 2692 |
| BsiHKCI | CYCGRG | 3 cut(s) | 167, 180, 1749 |
| BsiSI | CCGG | 7 cut(s) | 26, 51, 84, 355, 416, 1743, 2843 |
| BslFI | GGGAC | 2 cut(s) | 14, 3695 |
| BsmAI | GTCTC | 5 cut(s) | 671, 694, 867, 2503, 3310 |
| BsmBI | CGTCTC | 2 cut(s) | 2503, 3310 |
| BsmFI | GGGAC | 2 cut(s) | 14, 3695 |
| BsoBI | CYCGRG | 3 cut(s) | 167, 180, 1749 |
| Bsp119I | TTCGAA | 2 cut(s) | 287, 3623 |
| Bsp120I | GGGCCC | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 8 cut(s) | 174, 187, 216, 362, 612, 1330, 2692, 3605 |
| Bsp13I | TCCGGA | 1 cut(s) | 1742 |
| Bsp1407I | TGTACA | 1 cut(s) | 1449 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1170, 1201, 1629 |
| Bsp19I | CCATGG | 2 cut(s) | 1344, 2385 |
| Bsp68I | TCGCGA | 1 cut(s) | 347 |
| BspCNI | CTCAG | 9 cut(s) | 376, 436, 598, 1003, 1214, 1687, 1868, 1960, 1993 |
| BspDI | ATCGAT | 1 cut(s) | 2461 |
| BspEI | TCCGGA | 1 cut(s) | 1742 |
| BspFNI | CGCG | 3 cut(s) | 113, 347, 1690 |
| BspHI | TCATGA | 1 cut(s) | 174 |
| BspLI | GGNNCC | 8 cut(s) | 30, 55, 214, 353, 359, 809, 1113, 1608 |
| BspMAI | CTGCAG | 4 cut(s) | 711, 1842, 3382, 3561 |
| BspMI | ACCTGC | 3 cut(s) | 61, 714, 1921 |
| BspOI | GCTAGC | 1 cut(s) | 1566 |
| BspPI | GGATC | 8 cut(s) | 91, 275, 286, 292, 557, 2244, 3060, 3213 |
| BspQI | GCTCTTC | 1 cut(s) | 2488 |
| BspT104I | TTCGAA | 2 cut(s) | 287, 3623 |
| BspT107I | GGYRCC | 4 cut(s) | 357, 807, 1111, 1606 |
| BsrBI | CCGCTC | 1 cut(s) | 2603 |
| BsrDI | GCAATG | 1 cut(s) | 999 |
| BsrFI | RCCGGY | 2 cut(s) | 25, 83 |
| BsrGI | TGTACA | 1 cut(s) | 1449 |
| BsrI | ACTGG | 7 cut(s) | 1147, 1213, 1629, 1684, 2052, 2311, 2944 |
| BssAI | RCCGGY | 2 cut(s) | 25, 83 |
| BssNI | GRCGYC | 2 cut(s) | 960, 3319 |
| BssSI | CACGAG | 1 cut(s) | 1185 |
| BssT1I | CCWWGG | 4 cut(s) | 1344, 2385, 2540, 2632 |
| Bst2BI | CACGAG | 1 cut(s) | 1185 |
| Bst2UI | CCWGG | 8 cut(s) | 60, 188, 200, 210, 1059, 1866, 2823, 3203 |
| Bst4CI | ACNGT | 7 cut(s) | 812, 2568, 3151, 3184, 3448, 3501, 3544 |
| Bst6I | CTCTTC | 5 cut(s) | 477, 865, 1841, 2488, 3240 |
| BstACI | GRCGYC | 2 cut(s) | 960, 3319 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1042, 1211 |
| BstAUI | TGTACA | 1 cut(s) | 1449 |
| BstBAI | YACGTR | 4 cut(s) | 1028, 1139, 3219, 3656 |
| BstBI | TTCGAA | 2 cut(s) | 287, 3623 |
| BstDSI | CCRYGG | 3 cut(s) | 811, 1344, 2385 |
| BstEII | GGTNACC | 2 cut(s) | 118, 2702 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1812 |
| BstFNI | CGCG | 3 cut(s) | 113, 347, 1690 |
| BstHHI | GCGC | 4 cut(s) | 83, 92, 308, 1690 |
| BstMAI | GTCTC | 5 cut(s) | 671, 694, 867, 2503, 3310 |
| BstNI | CCWGG | 8 cut(s) | 60, 188, 200, 210, 1059, 1866, 2823, 3203 |
| BstNSI | RCATGY | 5 cut(s) | 1450, 1597, 2064, 2404, 3508 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 683 |
| BstPI | GGTNACC | 2 cut(s) | 118, 2702 |
| BstSCI | CCNGG | 9 cut(s) | 58, 186, 198, 208, 414, 1057, 1864, 2821, 3201 |
| BstSFI | CTRYAG | 4 cut(s) | 707, 1838, 3378, 3557 |
| BstSLI | GKGCMC | 3 cut(s) | 216, 362, 3605 |
| BstUI | CGCG | 3 cut(s) | 113, 347, 1690 |
| BstV2I | GAAGAC | 2 cut(s) | 2155, 3559 |
| BstX2I | RGATCY | 6 cut(s) | 96, 291, 297, 562, 2236, 3052 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 472, 1108, 2392 |
| BstYI | RGATCY | 6 cut(s) | 96, 291, 297, 562, 2236, 3052 |
| Bsu15I | ATCGAT | 1 cut(s) | 2461 |
| Bsu36I | CCTNAGG | 1 cut(s) | 444 |
| BsuTUI | ATCGAT | 1 cut(s) | 2461 |
| BtgI | CCRYGG | 3 cut(s) | 811, 1344, 2385 |
| BtsI | GCAGTG | 6 cut(s) | 32, 239, 834, 1052, 3469, 3729 |
| BtuMI | TCGCGA | 1 cut(s) | 347 |
| BveI | ACCTGC | 3 cut(s) | 61, 714, 1921 |
| CaiI | CAGNNNCTG | 4 cut(s) | 160, 566, 1208, 1616 |
| CciI | TCATGA | 1 cut(s) | 174 |
| CfoI | GCGC | 4 cut(s) | 83, 92, 308, 1690 |
| Cfr10I | RCCGGY | 2 cut(s) | 25, 83 |
| ClaI | ATCGAT | 1 cut(s) | 2461 |
| CseI | GACGC | 4 cut(s) | 119, 949, 2633, 3522 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1212, 1247 |
| DraIII | CACNNNGTG | 1 cut(s) | 2702 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 116, 383 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3323 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 116, 383 |
| EaeI | YGGCCR | 2 cut(s) | 2041, 2941 |
| Eam1104I | CTCTTC | 5 cut(s) | 477, 865, 1841, 2488, 3240 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3323 |
| EarI | CTCTTC | 5 cut(s) | 477, 865, 1841, 2488, 3240 |
| EciI | GGCGGA | 4 cut(s) | 12, 78, 222, 429 |
| Ecl136II | GAGCTC | 1 cut(s) | 172 |
| Eco130I | CCWWGG | 4 cut(s) | 1344, 2385, 2540, 2632 |
| Eco24I | GRGCYC | 4 cut(s) | 174, 187, 216, 612 |
| Eco32I | GATATC | 1 cut(s) | 2263 |
| Eco47I | GGWCC | 5 cut(s) | 28, 73, 1055, 1745, 2050 |
| Eco53kI | GAGCTC | 1 cut(s) | 172 |
| Eco57I | CTGAAG | 3 cut(s) | 1200, 1655, 2475 |
| Eco81I | CCTNAGG | 1 cut(s) | 444 |
| Eco88I | CYCGRG | 3 cut(s) | 167, 180, 1749 |
| Eco91I | GGTNACC | 2 cut(s) | 118, 2702 |
| EcoICRI | GAGCTC | 1 cut(s) | 172 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1812 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2282, 2764 |
| EcoO65I | GGTNACC | 2 cut(s) | 118, 2702 |
| EcoRI | GAATTC | 1 cut(s) | 125 |
| EcoRII | CCWGG | 8 cut(s) | 58, 186, 198, 208, 1057, 1864, 2821, 3201 |
| EcoRV | GATATC | 1 cut(s) | 2263 |
| EcoT14I | CCWWGG | 4 cut(s) | 1344, 2385, 2540, 2632 |
| EcoT22I | ATGCAT | 2 cut(s) | 2406, 2967 |
| EcoT38I | GRGCYC | 4 cut(s) | 174, 187, 216, 612 |
| ErhI | CCWWGG | 4 cut(s) | 1344, 2385, 2540, 2632 |
| Esp3I | CGTCTC | 2 cut(s) | 2503, 3310 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1140, 1172, 2868, 2900, 3072, 3104 |
| FaqI | GGGAC | 2 cut(s) | 14, 3695 |
| FauI | CCCGC | 2 cut(s) | 106, 233 |
| FauNDI | CATATG | 1 cut(s) | 1587 |
| FbaI | TGATCA | 2 cut(s) | 2269, 3160 |
| FriOI | GRGCYC | 4 cut(s) | 174, 187, 216, 612 |
| FspBI | CTAG | 6 cut(s) | 1298, 1427, 1536, 1563, 2684, 3297 |
| GlaI | GCGC | 4 cut(s) | 82, 91, 307, 1689 |
| GsuI | CTGGAG | 3 cut(s) | 386, 1701, 3192 |
| HapII | CCGG | 7 cut(s) | 26, 51, 84, 355, 416, 1743, 2843 |
| HgaI | GACGC | 4 cut(s) | 119, 949, 2633, 3522 |
| HhaI | GCGC | 4 cut(s) | 83, 92, 308, 1690 |
| Hin1I | GRCGYC | 2 cut(s) | 960, 3319 |
| Hin6I | GCGC | 4 cut(s) | 81, 90, 306, 1688 |
| HinP1I | GCGC | 4 cut(s) | 81, 90, 306, 1688 |
| HincII | GTYRAC | 1 cut(s) | 376 |
| HindII | GTYRAC | 1 cut(s) | 376 |
| HindIII | AAGCTT | 3 cut(s) | 1172, 2190, 3524 |
| HpaII | CCGG | 7 cut(s) | 26, 51, 84, 355, 416, 1743, 2843 |
| HphI | GGTGA | 4 cut(s) | 112, 737, 1157, 2714 |
| Hpy166II | GTNNAC | 6 cut(s) | 376, 668, 910, 1025, 1055, 2398 |
| Hpy8I | GTNNAC | 6 cut(s) | 376, 668, 910, 1025, 1055, 2398 |
| Hpy99I | CGWCG | 7 cut(s) | 140, 389, 1973, 2649, 3184, 3682, 3770 |
| HpyCH4III | ACNGT | 7 cut(s) | 812, 2568, 3151, 3184, 3448, 3501, 3544 |
| HpyCH4IV | ACGT | 7 cut(s) | 330, 1027, 1138, 2977, 3218, 3319, 3655 |
| HpySE526I | ACGT | 7 cut(s) | 330, 1027, 1138, 2977, 3218, 3319, 3655 |
| Hsp92I | GRCGYC | 2 cut(s) | 960, 3319 |
| HspAI | GCGC | 4 cut(s) | 81, 90, 306, 1688 |
| Kpn2I | TCCGGA | 1 cut(s) | 1742 |
| KroI | GCCGGC | 1 cut(s) | 83 |
| KroNI | GCCGGC | 1 cut(s) | 85 |
| Ksp22I | TGATCA | 2 cut(s) | 2269, 3160 |
| LguI | GCTCTTC | 1 cut(s) | 2488 |
| LmnI | GCTCC | 9 cut(s) | 405, 475, 755, 1325, 1834, 2608, 2687, 2794, 3173 |
| MaeI | CTAG | 6 cut(s) | 1298, 1427, 1536, 1563, 2684, 3297 |
| MaeII | ACGT | 7 cut(s) | 330, 1027, 1138, 2977, 3218, 3319, 3655 |
| MaeIII | GTNAC | 7 cut(s) | 118, 1235, 1705, 2077, 2350, 2702, 3214 |
| MbiI | CCGCTC | 1 cut(s) | 2603 |
| MfeI | CAATTG | 2 cut(s) | 146, 3517 |
| MflI | RGATCY | 6 cut(s) | 96, 291, 297, 562, 2236, 3052 |
| MhlI | GDGCHC | 8 cut(s) | 174, 187, 216, 362, 612, 1330, 2692, 3605 |
| MlsI | TGGCCA | 1 cut(s) | 2043 |
| MluNI | TGGCCA | 1 cut(s) | 2043 |
| MlyI | GAGTC | 3 cut(s) | 3086, 3233, 3398 |
| MmeI | TCCRAC | 3 cut(s) | 1303, 2953, 3364 |
| Mox20I | TGGCCA | 1 cut(s) | 2043 |
| Mph1103I | ATGCAT | 2 cut(s) | 2406, 2967 |
| MroI | TCCGGA | 1 cut(s) | 1742 |
| MroNI | GCCGGC | 1 cut(s) | 83 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1152 |
| MscI | TGGCCA | 1 cut(s) | 2043 |
| MseI | TTAA | 3 cut(s) | 791, 1065, 2207 |
| MslI | CAYNNNNRTG | 3 cut(s) | 470, 1349, 2390 |
| Msp20I | TGGCCA | 1 cut(s) | 2043 |
| MspA1I | CMGCKG | 3 cut(s) | 78, 1613, 1843 |
| MspI | CCGG | 7 cut(s) | 26, 51, 84, 355, 416, 1743, 2843 |
| MspR9I | CCNGG | 9 cut(s) | 60, 188, 200, 210, 416, 1059, 1866, 2823, 3203 |
| MunI | CAATTG | 2 cut(s) | 146, 3517 |
| MvaI | CCWGG | 8 cut(s) | 60, 188, 200, 210, 1059, 1866, 2823, 3203 |
| MvnI | CGCG | 3 cut(s) | 113, 347, 1690 |
| NaeI | GCCGGC | 1 cut(s) | 85 |
| NciI | CCSGG | 1 cut(s) | 416 |
| NcoI | CCATGG | 2 cut(s) | 1344, 2385 |
| NdeI | CATATG | 1 cut(s) | 1587 |
| NgoMIV | GCCGGC | 1 cut(s) | 83 |
| NheI | GCTAGC | 1 cut(s) | 1562 |
| NlaIV | GGNNCC | 8 cut(s) | 30, 55, 214, 353, 359, 809, 1113, 1608 |
| NmuCI | GTSAC | 4 cut(s) | 118, 1705, 2077, 2702 |
| NruI | TCGCGA | 1 cut(s) | 347 |
| NsiI | ATGCAT | 2 cut(s) | 2406, 2967 |
| NspI | RCATGY | 5 cut(s) | 1450, 1597, 2064, 2404, 3508 |
| NspV | TTCGAA | 2 cut(s) | 287, 3623 |
| PaeI | GCATGC | 1 cut(s) | 3508 |
| PaeR7I | CTCGAG | 1 cut(s) | 1749 |
| PagI | TCATGA | 1 cut(s) | 174 |
| PaqCI | CACCTGC | 1 cut(s) | 714 |
| PasI | CCCWGGG | 1 cut(s) | 209 |
| PciI | ACATGT | 1 cut(s) | 1446 |
| PciSI | GCTCTTC | 1 cut(s) | 2488 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 135, 3661 |
| PdiI | GCCGGC | 1 cut(s) | 85 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1152 |
| PleI | GAGTC | 3 cut(s) | 3086, 3232, 3397 |
| PpsI | GAGTC | 3 cut(s) | 3086, 3232, 3397 |
| Ppu21I | YACGTR | 4 cut(s) | 1028, 1139, 3219, 3656 |
| PscI | ACATGT | 1 cut(s) | 1446 |
| PshAI | GACNNNNGTC | 1 cut(s) | 683 |
| Psp124BI | GAGCTC | 1 cut(s) | 174 |
| Psp6I | CCWGG | 8 cut(s) | 58, 186, 198, 208, 1057, 1864, 2821, 3201 |
| PspEI | GGTNACC | 2 cut(s) | 118, 2702 |
| PspGI | CCWGG | 8 cut(s) | 58, 186, 198, 208, 1057, 1864, 2821, 3201 |
| PspN4I | GGNNCC | 8 cut(s) | 30, 55, 214, 353, 359, 809, 1113, 1608 |
| PspOMI | GGGCCC | 1 cut(s) | 212 |
| PstI | CTGCAG | 4 cut(s) | 711, 1842, 3382, 3561 |
| PstNI | CAGNNNCTG | 4 cut(s) | 160, 566, 1208, 1616 |
| PsuI | RGATCY | 6 cut(s) | 96, 291, 297, 562, 2236, 3052 |
| PvuII | CAGCTG | 1 cut(s) | 1613 |
| RruI | TCGCGA | 1 cut(s) | 347 |
| RseI | CAYNNNNRTG | 3 cut(s) | 470, 1349, 2390 |
| SacI | GAGCTC | 1 cut(s) | 174 |
| SapI | GCTCTTC | 1 cut(s) | 2488 |
| SaqAI | TTAA | 3 cut(s) | 791, 1065, 2207 |
| ScaI | AGTACT | 1 cut(s) | 1678 |
| SchI | GAGTC | 3 cut(s) | 3086, 3233, 3398 |
| ScrFI | CCNGG | 9 cut(s) | 60, 188, 200, 210, 416, 1059, 1866, 2823, 3203 |
| SduI | GDGCHC | 8 cut(s) | 174, 187, 216, 362, 612, 1330, 2692, 3605 |
| SfcI | CTRYAG | 4 cut(s) | 707, 1838, 3378, 3557 |
| Sfr274I | CTCGAG | 1 cut(s) | 1749 |
| SfuI | TTCGAA | 2 cut(s) | 287, 3623 |
| SinI | GGWCC | 5 cut(s) | 28, 73, 1055, 1745, 2050 |
| SlaI | CTCGAG | 1 cut(s) | 1749 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 470, 1349, 2390 |
| SmlI | CTYRAG | 1 cut(s) | 1749 |
| SmoI | CTYRAG | 1 cut(s) | 1749 |
| SphI | GCATGC | 1 cut(s) | 3508 |
| SspMI | CTAG | 6 cut(s) | 1298, 1427, 1536, 1563, 2684, 3297 |
| SstI | GAGCTC | 1 cut(s) | 174 |
| StyD4I | CCNGG | 9 cut(s) | 58, 186, 198, 208, 414, 1057, 1864, 2821, 3201 |
| StyI | CCWWGG | 4 cut(s) | 1344, 2385, 2540, 2632 |
| TaaI | ACNGT | 7 cut(s) | 812, 2568, 3151, 3184, 3448, 3501, 3544 |
| TaiI | ACGT | 7 cut(s) | 333, 1030, 1141, 2980, 3221, 3322, 3658 |
| TatI | WGTACW | 5 cut(s) | 907, 1449, 1676, 2167, 3539 |
| TauI | GCSGC | 4 cut(s) | 166, 247, 436, 3652 |
| Tru1I | TTAA | 3 cut(s) | 791, 1065, 2207 |
| Tru9I | TTAA | 3 cut(s) | 791, 1065, 2207 |
| TseFI | GTSAC | 4 cut(s) | 118, 1705, 2077, 2702 |
| Tsp45I | GTSAC | 4 cut(s) | 118, 1705, 2077, 2702 |
| TspGWI | ACGGA | 7 cut(s) | 533, 1277, 2380, 3362, 3525, 3695, 3721 |
| VpaK11BI | GGWCC | 5 cut(s) | 28, 73, 1055, 1745, 2050 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1812 |
| XceI | RCATGY | 5 cut(s) | 1450, 1597, 2064, 2404, 3508 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 206 |
| XhoI | CTCGAG | 1 cut(s) | 1749 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1152 |
| XspI | CTAG | 6 cut(s) | 1298, 1427, 1536, 1563, 2684, 3297 |
| ZraI | GACGTC | 1 cut(s) | 3320 |
| ZrmI | AGTACT | 1 cut(s) | 1678 |
| Zsp2I | ATGCAT | 2 cut(s) | 2406, 2967 |