Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366291.1

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 867

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 448 bp

atgctgttccttttaactatattctgtgcttctgttgatgatatccctgtatgtgatgtagctaaagattctggcaagctctctggccgtgtagctgattcagacatgcatgacgtcggacgtttcctcaatcggattttaggattgccacctaaagtacaaaataggctgttcgagttatttgttagtattttggatcttcttgtccataatgcacgcattgaaggaaatcttgactctgggattgttgatatgaaagctaatgttatagagctacaaggaactccaaagactgtccatgttgacgaaatgtctggagcttcaactgtgctcttcacttttaccctggatcgtggcatcacatgggagtctgcaagtgccatgcttgaaggtaaacaagaggaggggcttagttgtgcccatgatggcttctatgaatctagaaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

149

Amino Acids

16.39

Weight (kDa)

4.86

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AclWI	GGATC	2 cut(s)	204, 357
AcoI	YGGCCR	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	224, 324, 389
AhdI	GACNNNNNGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	6 cut(s)	62, 79, 95, 260, 274, 320
AluI	AGCT	6 cut(s)	62, 79, 95, 260, 274, 320
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	204, 357
AoxI	GGCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	333
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	347
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	333, 421
Bsp143I	GATC	2 cut(s)	196, 349
BspANI	GGCC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	204, 357
BspQI	GCTCTTC	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	196, 349
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	295, 328
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	77, 217
BstDEI	CTNAG	1 cut(s)	410
BstKTI	GATC	2 cut(s)	199, 352
BstMBI	GATC	2 cut(s)	196, 349
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	77, 217
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	6 cut(s)	106, 110, 299, 363, 382, 422
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	2 cut(s)	198, 351
DpnII	GATC	2 cut(s)	196, 349
DriI	GACNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	338
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	111
FaeI	CATG	6 cut(s)	109, 113, 302, 366, 385, 425
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	6 cut(s)	105, 109, 298, 362, 381, 421
FspBI	CTAG	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	109, 113, 302, 366, 385, 425
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	68, 98, 236, 368, 437
Hpy166II	GTNNAC	2 cut(s)	304, 395
Hpy188I	TCNGA	3 cut(s)	103, 119, 135
Hpy188III	TCNNGA	3 cut(s)	233, 315, 441
Hpy8I	GTNNAC	2 cut(s)	304, 395
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	218, 383, 438
HpyCH4III	ACNGT	2 cut(s)	295, 328
HpyCH4IV	ACGT	2 cut(s)	114, 121
HpyCH4V	TGCA	3 cut(s)	109, 215, 374
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	114, 121
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	109, 113, 302, 366, 385, 425
Kzo9I	GATC	2 cut(s)	196, 349
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	7 cut(s)	57, 60, 69, 225, 300, 332, 359
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	114, 121
MalI	GATC	2 cut(s)	198, 351
MboI	GATC	2 cut(s)	196, 349
MboII	GAAGA	2 cut(s)	191, 325
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	333, 421
MlyI	GAGTC	2 cut(s)	230, 377
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	137, 394, 397
Mph1103I	ATGCAT	1 cut(s)	111
MseI	TTAA	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	196, 349
NlaIII	CATG	6 cut(s)	109, 113, 302, 366, 385, 425
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	68, 98, 437
PleI	GAGTC	2 cut(s)	230, 376
PpsI	GAGTC	2 cut(s)	230, 376
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	196, 349
SchI	GAGTC	2 cut(s)	230, 377
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	333, 421
SfaNI	GCATC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	295, 328
TaiI	ACGT	2 cut(s)	117, 124
TaqI	TCGA	1 cut(s)	174
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	3 cut(s)	68, 98, 437
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	440
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	441
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.