Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Reverse (-)

8366049 .. 8380972

Gene Structure 14924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13920.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3789 bp

ATGGCTCAGCAGCAGCAGCAGCCGCCGGTCCCGCCGCAACTCCCGACCGCCGGCTCCACCGGCCCCGTCGGAGGCGTCCAGGTGCGGTGCGCCGGCTGCCACAAGATCCTCACCATCGCGGCCGGGGTCACGGAGTTCGTCTGCGGCACGTGTCAATTGCCGCAGATGCTTCCGCCGGAGCTGATGAGCCGGGCCCAGGCACATAACAAGGGCACGCTTGCTCTCACTCCGCCGCGGCCGCCGCACGTGGCCGCGCACGGCGTCGATCCTACGAAGATCCAGCTCCCCTGCGCCAACTGCAAGGCGATCCTCAATGTGCCTCACGGACTCTCTCGGTTTCAGTGCCCTCAGTGCCATGTTGACCTCGCCGTCGATGTTTCCAAGCTCAAGGAGTTCTTGCTGCCTCCGCCGCCTCCTCCCGAGGAGGTCAACGAGGTTGCCATTGAAGTGGAGCGAGAAGAAGATGAAGGTGGCCAAGCCGGGGAAACGTTTACCGATTATCGGCCTCCAAAACTGTCCATTGGACCTCCTCATCCAGATCCCGTTGTGGAAACATCATCCCTGTCTGCGGTGCAGCCACCTGAGCCAACTTACGATCTCACAATCAAGGATGATTTGGAAAATAAAAAAGCTTTATCATGTTTGCAGATTGAGACTTTGGTTTATGCCTGTCAGAGACACCTCCAACACCTTCCAAGTGGCGTTAGGGCTGGATTCTTTGTTGGAGATGGAGCTGGTGTGGGTAAAGGTCGAACAATTGCAGGGTTAATTTGGGAGAATTGGCACCATGGGAGGAGAAAGGCAGTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCAAGAAGAGACTTAGATGATGTAGGTGCAACATGTATAGAAGTTCATGCCTTGAACAAGCTGCCATATTCTAAGCTTGATTCCAAGTCTGTTGGCATCAAGGAGGGAGTTATATTCCTCACATACAGCAGCCTTATAGCATCTTCTGAGAAAGGTCGATCACGCATGCAACAGCTTGTGCAGTGGTGTGGATCAGGATATGATGGTCTTATCGTCTTTGACGAGTGCCACAAAGCCAAAAATTTGATTCCTGAAGCTGGAAGTCAGCCGACACGAACTGGTGAAGCAGTTCTTGACATTCAGGCTCGACTGCCTGAAGCTCGGGTTATTTATTGCTCAGCAACTGGTGCATCAGAACCACGCAACTTGGGTTACATGGTTCGGCTTGGTCTTTGGGGGCCTGGAACATCTTTTTCTGAGTTCCGTGAATTTCTAGGAGCTCTTGAGAAAGGAGGTGTTGGTGCACTTGAACTTGTTGCCATGGACATGAAAGCCAGGGGTATGTATGTGTGTCGTACCCTTAGCTACAAAGGAGCAGAGTTTGAAGTTGTTGAGGCACCACTAGAAGACGAAATGATGGAAATGTACAAAAAAGCAGCTGAATTTTGGACAGAGCTGCGAGTGGAAATACTAACAGCTACTGCCTATCTCACTAATGAAAAGCCTGCTTCTAGTCAAGTCTGGCGATTATACTGGGCTAGTCATCAGCGTTTCTTTAGACATATGTGTATGTCCGCTAAGGTGCCTGCTGCTGTAAGACTAGCTAAGAAAGCATTAATGGAGGACAAGTGTGTCGTAATTGGCCTTCAGAGTACTGGAGAGGCACGAACTGAAGAAGCTGTGACCAAATATGGTCTTGAACTTGATGATTTTATTTCGGGACCCCGAGAACTGTTGCTGAAATTTGTAGAAGAAAACTATCCTTTGCCTGAAAAGCCTGATCCTGTCACAGGGGAAGAAAGTGTAAAGGAGCTTCAACGGAAGAGGCACTCAGCCAGTCCTGGTGTTTCGATGAAAGGGAGAGTGAGGAAAGTTGCAAAAATGCAACTGCCAATTAATAATGAAAGTGATGAAGAATCTGAATCTGATTCTGCTGTCGAATCAACAGAATCAGATGACGAGTTTCAAATCTGTGAAATTTGCAATGCCGAAACGGAAAGAAAGAAATTGCTCCACTGTTCCTGTTGTGGCCAATTTGTCCATGCGGAATGCCTTATCCCACCTGTGATAGATGAGGTATCAGAAGATTGGTCATGTCATTCGTGCAAGGAAAAAACAGATGAATATCTTCAAAAGAGAGAGCAGTACATAGCTGATATGAAGAAGAGGTATGAAGCAGCTTTGGAGCGTAAGTCAAAAATTCTGGGGATAATTCGTTCCTTGGATCTTCCAAACAATCCTTTGGATGATATCATTGATCAGCTTGGAGGCCCTGATAAAGTAGCAGAAATGACAGGAAGGCGAGGTATGCTTGTGAGGGCATCTAACGGAAAAGGTGTTACCTATCAAGCTCGAAACACGAAGGAGGTTTCCATGGAGATGGTTAACATGCATGAGAAACAGCTTTTCATGGATGGCAAAAAGTTTGTTGCTATAATTTCTGAGGCTGGGTCAGCTGGTGTTTCTTTGCAGGCAGATAGGAGAGCTTTAAATCAGAAAAGAAGGGTACATCTAACCCTGGAACTTCCTTGGAGTGCTGATCGAGCGATTCAACAGTTCGGAAGAACTCACCGATCAAATCAAGCTTCTGCTCCTGAATACAGGCTACTCTTTACTAACCTTGGTGGAGAACGGCGGTTTGCATCCATTGTTGCAAAGAGATTAGAATCTCTTGGAGCCCTAACTCAGGGTGATCGCAGGGCAGGCCCATCATTGAGTGCCTATAATTATGACAGTGCGTATGGAAAGAAGGCATTGATATTGATGTATAAAGGAATATTGGAGCAGGTTTTTATGAACTTCTCTTGGCAAATAGATGCTCTGCCTGTTGTACCACCAGGATGTTCATCTGAAGACCCAGACACAATCCAAGAATTTATTGAGGAGGCAAGAGCTGCTCTTGTGTTCGTAGGAATAATTAGGGATGCTAAAGATTCTGGCAAGCTGACTGGCCGTGTAGCCGATTCAGACATGCACGATGTAGGACGTTTCCTCAATCGGATTTTAGGATTGCCTCCTAAAGTACAAAATAGGCTGTTCGAGTTGTTTGTTAGTATTTTGGATCTTCTTGTCCATAATGCACGCATTGAAGGGAATCTTGACTCTGGGATTGTTGATATGAAAGCTAATGTTATAGAGCTACAAGGAACTCCAAAGACTGTCCATGTTGACGAAATGTCTGGAGCTTCAACTGTGCTTTTCACTTTTACCCTGGATCGTGGCATCACATGGGAGTCCGCAAGTGCCATGCTTGAAGGTAAACAAGAGGAGGGGCTTAGTTGTGCCCATGATGGGTTTTATGAATCTAGAAGGGAGTGGATGGGGAGACGCCATACTATACTAGCCTTTGAGAGTTCTACTTCGGGGTCATATAAGATAGTCCGTCCTGCAGTTGGAGAGTCAGTGAGAGAAATGTCTCTGGCTGAGCTAAAAAGCAAATACCGGAAAACATCATCGTTGGAGAAGGCTCACAGTGGTTGGAAAGATGAATATGATGTTTCATCCAAACAGTGCATGCATGGTCCCAAGTGTAAGATTGGCAACTTCTGTACTGTTGGCAGAAGGCTGCAGGAAGTAAATGTATTAGGTGGTCTCATTCTTCCTGTATGGGGCACTATTGAGAAAGCTCTTTCTAAGCAGTCCCGGCTAAGCCACAGGCGGCTACGTGTTGTGCGTATAGAAACCACAACAGATAACCAGAGAATTGTTGGTCTCTTTGTCCCCAATGCAGCTGTTGAATCCGTACTTCAAGATTTCGCATGGGTTCAAGAAATTGAAGATTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

1263

Amino Acids

139.9

Weight (kDa)

6.22

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_FGT1_1	PF23547	26 - 60	3.5e-18	FORGETTER1 first zinc ribbon domain
Zn_ribbon_FGT1_1	PF23547	93 - 122	6.3e-10	FORGETTER1 first zinc ribbon domain
Zn_ribbon_FGT1_2	PF23548	93 - 126	3.7e-17	FORGETTER1 second zinc ribbon domain
AAA_34	PF13872	177 - 477	7.3e-135	P-loop containing NTP hydrolase pore-1
Helicase_C_4	PF13871	746 - 1030	2.9e-104	C-terminal domain on Strawberry notch homologue
SBNO	PF25373	1067 - 1179	2.3e-18	SBNO alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	368, 1631
Acc36I	ACCTGC	1 cut(s)	2776
AccB1I	GGYRCC	3 cut(s)	783, 1396, 1582
AccII	CGCG	3 cut(s)	119, 235, 254
AclI	AACGTT	1 cut(s)	488
AcoI	YGGCCR	6 cut(s)	120, 236, 249, 472, 2029, 2950
AcsI	RAATTY	7 cut(s)	1081, 1268, 1442, 1742, 1977, 2199, 2873
AcuI	CTGAAG	5 cut(s)	1113, 1176, 1631, 1692, 2871
AcvI	CACGTG	2 cut(s)	150, 247
AcyI	GRCGYC	3 cut(s)	75, 261, 3328
AfaI	GTAC	9 cut(s)	1357, 1427, 1654, 2147, 2508, 2832, 3024, 3550, 3744
AflIII	ACRYGT	3 cut(s)	149, 872, 3664
AhdI	GACNNNNNGTC	1 cut(s)	3175
AjnI	CCWGG	8 cut(s)	78, 195, 1240, 1334, 1840, 2517, 2836, 3210
AloI	GAACNNNNNNTCC	2 cut(s)	2200, 2232
Alw21I	GWGCWC	2 cut(s)	1282, 1306
Alw26I	GTCTC	7 cut(s)	647, 670, 843, 3319, 3420, 3596, 3716
Alw44I	GTGCAC	1 cut(s)	1302
AlwNI	CAGNNNCTG	2 cut(s)	1184, 1481
Ama87I	CYCGRG	3 cut(s)	419, 1161, 1725
ApaI	GGGCCC	1 cut(s)	196
ApaLI	GTGCAC	1 cut(s)	1302
ApoI	RAATTY	7 cut(s)	1081, 1268, 1442, 1742, 1977, 2199, 2873
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AseI	ATTAAT	2 cut(s)	1616, 1896
Asp700I	GAANNNNTTC	2 cut(s)	1128, 2127
AspLEI	GCGC	3 cut(s)	92, 256, 293
AsuC2I	CCSGG	4 cut(s)	124, 191, 481, 3643
AsuHPI	GGTGA	4 cut(s)	103, 1133, 2561, 2702
AvaI	CYCGRG	3 cut(s)	419, 1161, 1725
AvaII	GGWCC	4 cut(s)	28, 524, 1721, 3521
BaeGI	GKGCMC	6 cut(s)	196, 215, 347, 1306, 3286, 3614
BalI	TGGCCA	2 cut(s)	474, 2031
BanI	GGYRCC	3 cut(s)	783, 1396, 1582
BanII	GRGCYC	3 cut(s)	196, 1282, 2680
BarI	GAAGNNNNNNTAC	4 cut(s)	1629, 1661, 1797, 1829
BbrPI	CACGTG	2 cut(s)	150, 247
BbsI	GAAGAC	2 cut(s)	1413, 2859
Bbv12I	GWGCWC	2 cut(s)	1282, 1306
BccI	CCATC	9 cut(s)	122, 722, 1037, 1411, 2374, 2408, 2716, 3284, 3313
BceAI	ACGGC	4 cut(s)	274, 353, 2648, 2937
BciT130I	CCWGG	8 cut(s)	80, 197, 1242, 1336, 1842, 2519, 2838, 3212
BclI	TGATCA	1 cut(s)	2257
BcnI	CCSGG	4 cut(s)	124, 191, 481, 3643
BcoDI	GTCTC	7 cut(s)	647, 670, 843, 3319, 3420, 3596, 3716
BfaI	CTAG	7 cut(s)	1274, 1403, 1512, 1539, 1601, 3306, 3341
BfmI	CTRYAG	2 cut(s)	3387, 3566
BfuAI	ACCTGC	1 cut(s)	2776
BlpI	GCTNAGC	4 cut(s)	6, 1177, 3423, 3647
BmcAI	AGTACT	1 cut(s)	1654
Bme18I	GGWCC	4 cut(s)	28, 524, 1721, 3521
BmeRI	GACNNNNNGTC	1 cut(s)	3175
BmeT110I	CYCGRG	3 cut(s)	419, 1161, 1725
BmrI	ACTGGG	1 cut(s)	1543
BmuI	ACTGGG	1 cut(s)	1543
BpiI	GAAGAC	2 cut(s)	1413, 2859
BpmI	CTGGAG	2 cut(s)	1677, 3201
Bpu10I	CCTNAGC	3 cut(s)	582, 1361, 1578
Bpu1102I	GCTNAGC	4 cut(s)	6, 1177, 3423, 3647
BpuEI	CTTGAG	2 cut(s)	371, 1304
BpuMI	CCSGG	4 cut(s)	124, 191, 481, 3643
BsaAI	YACGTR	3 cut(s)	150, 247, 3665
BsaBI	GATNNNNATC	3 cut(s)	2124, 2665, 2845
BsaHI	GRCGYC	3 cut(s)	75, 261, 3328
BsaI	GGTCTC	2 cut(s)	3596, 3716
BsaWI	WCCGGW	1 cut(s)	3441
BsaXI	ACNNNNNCTCC	8 cut(s)	723, 753, 1613, 1643, 2177, 2207, 3387, 3417
Bse118I	RCCGGY	4 cut(s)	25, 50, 59, 92
Bse1I	ACTGG	6 cut(s)	1123, 1189, 1538, 1660, 1836, 2953
Bse3DI	GCAATG	1 cut(s)	1990
Bse8I	GATNNNNATC	3 cut(s)	2124, 2665, 2845
BseBI	CCWGG	8 cut(s)	80, 197, 1242, 1336, 1842, 2519, 2838, 3212
BseJI	GATNNNNATC	3 cut(s)	2124, 2665, 2845
BseMI	GCAATG	1 cut(s)	1990
BseNI	ACTGG	6 cut(s)	1123, 1189, 1538, 1660, 1836, 2953
BseRI	GAGGAG	6 cut(s)	405, 437, 519, 808, 2897, 3281
BseSI	GKGCMC	6 cut(s)	196, 215, 347, 1306, 3286, 3614
BseX3I	CGGCCG	2 cut(s)	120, 236
BseYI	CCCAGC	1 cut(s)	2447
BsgI	GTGCAG	2 cut(s)	593, 1040
Bsh1236I	CGCG	3 cut(s)	119, 235, 254
Bsh1285I	CGRYCG	3 cut(s)	48, 123, 239
BshNI	GGYRCC	3 cut(s)	783, 1396, 1582
BsiEI	CGRYCG	3 cut(s)	48, 123, 239
BsiHKAI	GWGCWC	2 cut(s)	1282, 1306
BsiHKCI	CYCGRG	3 cut(s)	419, 1161, 1725
BslFI	GGGAC	5 cut(s)	14, 1734, 3507, 3625, 3704
BsmAI	GTCTC	7 cut(s)	647, 670, 843, 3319, 3420, 3596, 3716
BsmBI	CGTCTC	1 cut(s)	3319
BsmFI	GGGAC	5 cut(s)	14, 1734, 3507, 3625, 3704
BsmI	GAATGC	1 cut(s)	2054
Bso31I	GGTCTC	2 cut(s)	3596, 3716
BsoBI	CYCGRG	3 cut(s)	419, 1161, 1725
Bsp120I	GGGCCC	1 cut(s)	192
Bsp1286I	GDGCHC	8 cut(s)	196, 215, 347, 1282, 1306, 2680, 3286, 3614
Bsp1407I	TGTACA	1 cut(s)	1425
Bsp1720I	GCTNAGC	4 cut(s)	6, 1177, 3423, 3647
Bsp19I	CCATGG	3 cut(s)	787, 1320, 2373
BspFNI	CGCG	3 cut(s)	119, 235, 254
BspMAI	CTGCAG	2 cut(s)	3391, 3570
BspMI	ACCTGC	1 cut(s)	2776
BspT107I	GGYRCC	3 cut(s)	783, 1396, 1582
BspTNI	GGTCTC	2 cut(s)	3596, 3716
BsrDI	GCAATG	1 cut(s)	1990
BsrFI	RCCGGY	4 cut(s)	25, 50, 59, 92
BsrGI	TGTACA	1 cut(s)	1425
BsrI	ACTGG	6 cut(s)	1123, 1189, 1538, 1660, 1836, 2953
BssAI	RCCGGY	4 cut(s)	25, 50, 59, 92
BssNI	GRCGYC	3 cut(s)	75, 261, 3328
BssT1I	CCWWGG	6 cut(s)	787, 1320, 2220, 2373, 2528, 2620
Bst2UI	CCWGG	8 cut(s)	80, 197, 1242, 1336, 1842, 2519, 2838, 3212
Bst6I	CTCTTC	3 cut(s)	841, 1817, 2159
BstACI	GRCGYC	3 cut(s)	75, 261, 3328
BstAPI	GCANNNNNTGC	2 cut(s)	1187, 2894
BstAUI	TGTACA	1 cut(s)	1425
BstBAI	YACGTR	3 cut(s)	150, 247, 3665
BstDSI	CCRYGG	4 cut(s)	233, 787, 1320, 2373
BstENI	CCTNNNNNAGG	2 cut(s)	1788, 2684
BstFNI	CGCG	3 cut(s)	119, 235, 254
BstHHI	GCGC	3 cut(s)	92, 256, 293
BstMAI	GTCTC	7 cut(s)	647, 670, 843, 3319, 3420, 3596, 3716
BstMCI	CGRYCG	3 cut(s)	48, 123, 239
BstNI	CCWGG	8 cut(s)	80, 197, 1242, 1336, 1842, 2519, 2838, 3212
BstNSI	RCATGY	5 cut(s)	876, 1009, 2392, 2974, 3517
BstSFI	CTRYAG	2 cut(s)	3387, 3566
BstSLI	GKGCMC	6 cut(s)	196, 215, 347, 1306, 3286, 3614
BstUI	CGCG	3 cut(s)	119, 235, 254
BstV2I	GAAGAC	2 cut(s)	1413, 2859
BstX2I	RGATCY	5 cut(s)	105, 276, 538, 2224, 3061
BstXI	CCANNNNNNTGG	2 cut(s)	448, 2380
BstYI	RGATCY	5 cut(s)	105, 276, 538, 2224, 3061
BstZI	CGGCCG	2 cut(s)	120, 236
BtgI	CCRYGG	4 cut(s)	233, 787, 1320, 2373
BtgZI	GCGATG	1 cut(s)	100
BtsI	GCAGTG	2 cut(s)	810, 1028
BtsIMutI	CAGTG	9 cut(s)	347, 356, 810, 1028, 2014, 2740, 3408, 3478, 3515
BveI	ACCTGC	1 cut(s)	2776
CaiI	CAGNNNCTG	2 cut(s)	1184, 1481
CciNI	GCGGCCGC	1 cut(s)	236
CfoI	GCGC	3 cut(s)	92, 256, 293
Cfr10I	RCCGGY	4 cut(s)	25, 50, 59, 92
Cfr42I	CCGCGG	1 cut(s)	236
CseI	GACGC	3 cut(s)	64, 250, 3336
Csp6I	GTAC	9 cut(s)	1356, 1426, 1653, 2146, 2507, 2831, 3023, 3549, 3743
CspCI	CAANNNNNGTGG	2 cut(s)	1188, 1223
CviQI	GTAC	9 cut(s)	1356, 1426, 1653, 2146, 2507, 2831, 3023, 3549, 3743
DraI	TTTAAA	1 cut(s)	2490
DrdI	GACNNNNNNGTC	2 cut(s)	368, 1631
DriI	GACNNNNNGTC	1 cut(s)	3175
DseDI	GACNNNNNNGTC	2 cut(s)	368, 1631
EaeI	YGGCCR	6 cut(s)	120, 236, 249, 472, 2029, 2950
EagI	CGGCCG	2 cut(s)	120, 236
Eam1104I	CTCTTC	3 cut(s)	841, 1817, 2159
Eam1105I	GACNNNNNGTC	1 cut(s)	3175
EarI	CTCTTC	3 cut(s)	841, 1817, 2159
EciI	GGCGGA	3 cut(s)	162, 219, 396
Ecl136II	GAGCTC	1 cut(s)	1280
EclXI	CGGCCG	2 cut(s)	120, 236
Eco130I	CCWWGG	6 cut(s)	787, 1320, 2220, 2373, 2528, 2620
Eco24I	GRGCYC	3 cut(s)	196, 1282, 2680
Eco31I	GGTCTC	2 cut(s)	3596, 3716
Eco32I	GATATC	1 cut(s)	2251
Eco47I	GGWCC	4 cut(s)	28, 524, 1721, 3521
Eco52I	CGGCCG	2 cut(s)	120, 236
Eco53kI	GAGCTC	1 cut(s)	1280
Eco57I	CTGAAG	5 cut(s)	1113, 1176, 1631, 1692, 2871
Eco72I	CACGTG	2 cut(s)	150, 247
Eco88I	CYCGRG	3 cut(s)	419, 1161, 1725
EcoICRI	GAGCTC	1 cut(s)	1280
EcoNI	CCTNNNNNAGG	2 cut(s)	1788, 2684
EcoO109I	RGGNCCY	3 cut(s)	1238, 1721, 2270
EcoRII	CCWGG	8 cut(s)	78, 195, 1240, 1334, 1840, 2517, 2836, 3210
EcoRV	GATATC	1 cut(s)	2251
EcoT14I	CCWWGG	6 cut(s)	787, 1320, 2220, 2373, 2528, 2620
EcoT22I	ATGCAT	2 cut(s)	2394, 3519
EcoT38I	GRGCYC	3 cut(s)	196, 1282, 2680
ErhI	CCWWGG	6 cut(s)	787, 1320, 2220, 2373, 2528, 2620
Esp3I	CGTCTC	1 cut(s)	3319
FalI	AAGNNNNNCTT	6 cut(s)	380, 412, 1116, 1148, 3081, 3113
FaqI	GGGAC	5 cut(s)	14, 1734, 3507, 3625, 3704
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	1563
FbaI	TGATCA	1 cut(s)	2257
FriOI	GRGCYC	3 cut(s)	196, 1282, 2680
FspBI	CTAG	7 cut(s)	1274, 1403, 1512, 1539, 1601, 3306, 3341
GlaI	GCGC	3 cut(s)	91, 255, 292
GsaI	CCCAGC	1 cut(s)	2451
GsuI	CTGGAG	2 cut(s)	1677, 3201
HgaI	GACGC	3 cut(s)	64, 250, 3336
HhaI	GCGC	3 cut(s)	92, 256, 293
Hin1I	GRCGYC	3 cut(s)	75, 261, 3328
Hin6I	GCGC	3 cut(s)	90, 254, 291
HinP1I	GCGC	3 cut(s)	90, 254, 291
HincII	GTYRAC	4 cut(s)	361, 430, 2386, 3169
HindII	GTYRAC	4 cut(s)	361, 430, 2386, 3169
HindIII	AAGCTT	3 cut(s)	630, 914, 2583
HpaI	GTTAAC	1 cut(s)	2386
HphI	GGTGA	4 cut(s)	103, 1133, 2561, 2702
Hpy166II	GTNNAC	7 cut(s)	361, 430, 492, 1304, 2386, 3169, 3260
Hpy8I	GTNNAC	7 cut(s)	361, 430, 492, 1304, 2386, 3169, 3260
Hpy99I	CGWCG	3 cut(s)	71, 266, 374
HpyCH4IV	ACGT	5 cut(s)	149, 246, 488, 2986, 3664
HpySE526I	ACGT	5 cut(s)	149, 246, 488, 2986, 3664
Hsp92I	GRCGYC	3 cut(s)	75, 261, 3328
HspAI	GCGC	3 cut(s)	90, 254, 291
KflI	GGGWCCC	1 cut(s)	1721
KroI	GCCGGC	2 cut(s)	50, 92
KroNI	GCCGGC	2 cut(s)	52, 94
Ksp22I	TGATCA	1 cut(s)	2257
KspAI	GTTAAC	1 cut(s)	2386
KspI	CCGCGG	1 cut(s)	236
MaeI	CTAG	7 cut(s)	1274, 1403, 1512, 1539, 1601, 3306, 3341
MaeII	ACGT	5 cut(s)	149, 246, 488, 2986, 3664
MaeIII	GTNAC	5 cut(s)	127, 1211, 1681, 1786, 2338
MfeI	CAATTG	2 cut(s)	155, 756
MflI	RGATCY	5 cut(s)	105, 276, 538, 2224, 3061
MhlI	GDGCHC	8 cut(s)	196, 215, 347, 1282, 1306, 2680, 3286, 3614
MlsI	TGGCCA	2 cut(s)	474, 2031
MluNI	TGGCCA	2 cut(s)	474, 2031
MlyI	GAGTC	4 cut(s)	321, 3095, 3242, 3407
MmeI	TCCRAC	6 cut(s)	49, 703, 709, 3373, 3438, 3458
Mox20I	TGGCCA	2 cut(s)	474, 2031
Mph1103I	ATGCAT	2 cut(s)	2394, 3519
MroNI	GCCGGC	2 cut(s)	50, 92
MroXI	GAANNNNTTC	2 cut(s)	1128, 2127
MscI	TGGCCA	2 cut(s)	474, 2031
MseI	TTAA	5 cut(s)	767, 1616, 1896, 2385, 2489
MslI	CAYNNNNRTG	4 cut(s)	446, 1325, 2378, 2839
Msp20I	TGGCCA	2 cut(s)	474, 2031
MspA1I	CMGCKG	4 cut(s)	235, 1439, 2456, 3731
MunI	CAATTG	2 cut(s)	155, 756
Mva1269I	GAATGC	1 cut(s)	2054
MvaI	CCWGG	8 cut(s)	80, 197, 1242, 1336, 1842, 2519, 2838, 3212
MvnI	CGCG	3 cut(s)	119, 235, 254
NaeI	GCCGGC	2 cut(s)	52, 94
NciI	CCSGG	4 cut(s)	124, 191, 481, 3643
NcoI	CCATGG	3 cut(s)	787, 1320, 2373
NdeI	CATATG	1 cut(s)	1563
NgoMIV	GCCGGC	2 cut(s)	50, 92
NmuCI	GTSAC	3 cut(s)	127, 1681, 1786
NotI	GCGGCCGC	1 cut(s)	236
NsiI	ATGCAT	2 cut(s)	2394, 3519
NspI	RCATGY	5 cut(s)	876, 1009, 2392, 2974, 3517
PaeI	GCATGC	2 cut(s)	1009, 3517
PciI	ACATGT	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	2 cut(s)	1059, 3670
PctI	GAATGC	1 cut(s)	2054
PdiI	GCCGGC	2 cut(s)	52, 94
PdmI	GAANNNNTTC	2 cut(s)	1128, 2127
PleI	GAGTC	4 cut(s)	321, 3095, 3241, 3406
PmaCI	CACGTG	2 cut(s)	150, 247
PmlI	CACGTG	2 cut(s)	150, 247
PpsI	GAGTC	4 cut(s)	321, 3095, 3241, 3406
Ppu21I	YACGTR	3 cut(s)	150, 247, 3665
PpuMI	RGGWCCY	1 cut(s)	1721
PscI	ACATGT	1 cut(s)	872
PshBI	ATTAAT	2 cut(s)	1616, 1896
Psp124BI	GAGCTC	1 cut(s)	1282
Psp1406I	AACGTT	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	1721
Psp6I	CCWGG	8 cut(s)	78, 195, 1240, 1334, 1840, 2517, 2836, 3210
PspCI	CACGTG	2 cut(s)	150, 247
PspFI	CCCAGC	1 cut(s)	2447
PspGI	CCWGG	8 cut(s)	78, 195, 1240, 1334, 1840, 2517, 2836, 3210
PspOMI	GGGCCC	1 cut(s)	192
PspPPI	RGGWCCY	1 cut(s)	1721
PstI	CTGCAG	2 cut(s)	3391, 3570
PstNI	CAGNNNCTG	2 cut(s)	1184, 1481
PsuI	RGATCY	5 cut(s)	105, 276, 538, 2224, 3061
PvuII	CAGCTG	3 cut(s)	1439, 2456, 3731
RsaI	GTAC	9 cut(s)	1357, 1427, 1654, 2147, 2508, 2832, 3024, 3550, 3744
RsaNI	GTAC	9 cut(s)	1356, 1426, 1653, 2146, 2507, 2831, 3023, 3549, 3743
RseI	CAYNNNNRTG	4 cut(s)	446, 1325, 2378, 2839
SacI	GAGCTC	1 cut(s)	1282
SacII	CCGCGG	1 cut(s)	236
SaqAI	TTAA	5 cut(s)	767, 1616, 1896, 2385, 2489
ScaI	AGTACT	1 cut(s)	1654
SchI	GAGTC	4 cut(s)	321, 3095, 3242, 3407
SduI	GDGCHC	8 cut(s)	196, 215, 347, 1282, 1306, 2680, 3286, 3614
SfcI	CTRYAG	2 cut(s)	3387, 3566
Sfr303I	CCGCGG	1 cut(s)	236
SgrBI	CCGCGG	1 cut(s)	236
SinI	GGWCC	4 cut(s)	28, 524, 1721, 3521
SmiMI	CAYNNNNRTG	4 cut(s)	446, 1325, 2378, 2839
SmlI	CTYRAG	2 cut(s)	386, 1283
SmoI	CTYRAG	2 cut(s)	386, 1283
SphI	GCATGC	2 cut(s)	1009, 3517
SspI	AATATT	1 cut(s)	2778
SspMI	CTAG	7 cut(s)	1274, 1403, 1512, 1539, 1601, 3306, 3341
SstI	GAGCTC	1 cut(s)	1282
StyI	CCWWGG	6 cut(s)	787, 1320, 2220, 2373, 2528, 2620
TaiI	ACGT	5 cut(s)	152, 249, 491, 2989, 3667
TatI	WGTACW	5 cut(s)	1425, 1652, 2145, 3022, 3548
Tru1I	TTAA	5 cut(s)	767, 1616, 1896, 2385, 2489
Tru9I	TTAA	5 cut(s)	767, 1616, 1896, 2385, 2489
TscAI	CASTG	9 cut(s)	347, 356, 810, 1028, 2021, 2740, 3408, 3478, 3515
TseFI	GTSAC	3 cut(s)	127, 1681, 1786
Tsp45I	GTSAC	3 cut(s)	127, 1681, 1786
TspGWI	ACGGA	8 cut(s)	146, 339, 1253, 1834, 2009, 2343, 3371, 3730
TspRI	CASTG	9 cut(s)	347, 356, 810, 1028, 2021, 2740, 3408, 3478, 3515
VneI	GTGCAC	1 cut(s)	1302
VpaK11BI	GGWCC	4 cut(s)	28, 524, 1721, 3521
VspI	ATTAAT	2 cut(s)	1616, 1896
XagI	CCTNNNNNAGG	2 cut(s)	1788, 2684
XapI	RAATTY	7 cut(s)	1081, 1268, 1442, 1742, 1977, 2199, 2873
XbaI	TCTAGA	1 cut(s)	3305
XceI	RCATGY	5 cut(s)	876, 1009, 2392, 2974, 3517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3704
XmnI	GAANNNNTTC	2 cut(s)	1128, 2127
XspI	CTAG	7 cut(s)	1274, 1403, 1512, 1539, 1601, 3306, 3341
ZrmI	AGTACT	1 cut(s)	1654
Zsp2I	ATGCAT	2 cut(s)	2394, 3519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.