TATA element modulatory factor 1 TATA binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79830 AT1G79830 AT1G79830 AT1G79830 AT1G79830 |
| fragaria_vesca | FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 |
| malus_domestica | MD09G1208900.v1.1 MD17G1190500.v1.1 |
| prunus_persica | Prupe.2G059800_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.5G245900_v2.0.a1 Prupe.5G245900_v2.0.a1 |
| pyrus_communis | pycom09g12520 |
| rosa_chinensis | RchiOBHm_Chr2g0139071 |
| rosa_laevigata | RLG00000019788 |
| rosa_multiflora | Rmu_sc0006014.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00105700 |
| rosa_rugosa | Rorug02G0354600 |
| rosa_samantha | Rh2AG404600 Rh2BG414600 Rh2CG390900 Rh2DG424300 |
| rosa_wichuraiana | Rw2G033050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 181 |
| Acc36I | ACCTGC | 1 cut(s) | 181 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1708 |
| AccBSI | CCGCTC | 3 cut(s) | 1261, 1684, 2804 |
| AccI | GTMKAC | 1 cut(s) | 1856 |
| AccII | CGCG | 1 cut(s) | 2750 |
| AciI | CCGC | 8 cut(s) | 141, 446, 1261, 1304, 1684, 2608, 2750, 2804 |
| AclWI | GGATC | 7 cut(s) | 194, 319, 422, 435, 2045, 2316, 2857 |
| AcoI | YGGCCR | 1 cut(s) | 167 |
| AcsI | RAATTY | 8 cut(s) | 65, 97, 723, 763, 894, 1945, 2374, 2483 |
| AcuI | CTGAAG | 9 cut(s) | 165, 473, 639, 1203, 1371, 1445, 2007, 2460, 2667 |
| AdeI | CACNNNGTG | 1 cut(s) | 2552 |
| AfaI | GTAC | 4 cut(s) | 268, 1630, 2528, 2831 |
| AfeI | AGCGCT | 1 cut(s) | 2000 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1260, 1708, 2287 |
| AflII | CTTAAG | 1 cut(s) | 1729 |
| AflIII | ACRYGT | 1 cut(s) | 1767 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 127 |
| AhlI | ACTAGT | 3 cut(s) | 518, 950, 2653 |
| AjnI | CCWGG | 3 cut(s) | 69, 1701, 2640 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1754, 1786 |
| Alw26I | GTCTC | 5 cut(s) | 285, 698, 1523, 2072, 2350 |
| AlwI | GGATC | 7 cut(s) | 194, 319, 422, 435, 2045, 2316, 2857 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 344, 416, 593, 1708, 2348 |
| Ama87I | CYCGRG | 2 cut(s) | 572, 2707 |
| Aor51HI | AGCGCT | 1 cut(s) | 2000 |
| AoxI | GGCC | 6 cut(s) | 167, 1305, 1862, 2052, 2083, 2322 |
| ApoI | RAATTY | 8 cut(s) | 65, 97, 723, 763, 894, 1945, 2374, 2483 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 866, 898, 1170, 1202, 1448, 1480 |
| AseI | ATTAAT | 1 cut(s) | 1835 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2355 |
| AspLEI | GCGC | 4 cut(s) | 56, 1708, 2001, 2420 |
| AspS9I | GGNCC | 7 cut(s) | 1306, 1789, 2053, 2083, 2278, 2323, 2704 |
| AsuC2I | CCSGG | 2 cut(s) | 2708, 2709 |
| AsuHPI | GGTGA | 6 cut(s) | 743, 768, 1243, 2597, 2783, 2866 |
| AsuNHI | GCTAGC | 1 cut(s) | 322 |
| AvaI | CYCGRG | 2 cut(s) | 572, 2707 |
| AvaII | GGWCC | 3 cut(s) | 1789, 2278, 2704 |
| AxyI | CCTNAGG | 4 cut(s) | 402, 505, 609, 2508 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2126, 2159 |
| BalI | TGGCCA | 1 cut(s) | 169 |
| BamHI | GGATCC | 1 cut(s) | 427 |
| BanII | GRGCYC | 1 cut(s) | 1414 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2813, 2845 |
| BauI | CACGAG | 1 cut(s) | 924 |
| BbsI | GAAGAC | 5 cut(s) | 261, 515, 855, 1037, 1770 |
| BbvCI | CCTCAGC | 2 cut(s) | 594, 1620 |
| BccI | CCATC | 4 cut(s) | 668, 839, 1218, 2761 |
| BceAI | ACGGC | 1 cut(s) | 2337 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1102, 1136 |
| BciT130I | CCWGG | 3 cut(s) | 71, 1703, 2642 |
| BciVI | GTATCC | 2 cut(s) | 940, 1258 |
| BclI | TGATCA | 2 cut(s) | 385, 1449 |
| BcnI | CCSGG | 2 cut(s) | 2708, 2709 |
| BcoDI | GTCTC | 5 cut(s) | 285, 698, 1523, 2072, 2350 |
| BcuI | ACTAGT | 3 cut(s) | 518, 950, 2653 |
| BfmI | CTRYAG | 6 cut(s) | 174, 636, 1509, 1593, 1929, 2361 |
| BfoI | RGCGCY | 3 cut(s) | 57, 1709, 2002 |
| BfrI | CTTAAG | 1 cut(s) | 1729 |
| BfuAI | ACCTGC | 1 cut(s) | 181 |
| BfuI | GTATCC | 2 cut(s) | 940, 1258 |
| BglII | AGATCT | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 5 cut(s) | 71, 1703, 2642, 2708, 2709 |
| Bme18I | GGWCC | 3 cut(s) | 1789, 2278, 2704 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 127 |
| BmeT110I | CYCGRG | 2 cut(s) | 572, 2707 |
| BmgT120I | GGNCC | 7 cut(s) | 1306, 1789, 2053, 2083, 2278, 2323, 2704 |
| BmiI | GGNNCC | 4 cut(s) | 429, 1848, 2705, 2706 |
| BmrFI | CCNGG | 5 cut(s) | 71, 1703, 2642, 2708, 2709 |
| BmsI | GCATC | 5 cut(s) | 139, 1110, 1288, 2550, 2624 |
| BmtI | GCTAGC | 1 cut(s) | 326 |
| BpiI | GAAGAC | 5 cut(s) | 261, 515, 855, 1037, 1770 |
| BpmI | CTGGAG | 1 cut(s) | 1698 |
| Bpu10I | CCTNAGC | 5 cut(s) | 594, 1089, 1406, 1620, 2154 |
| BpuEI | CTTGAG | 5 cut(s) | 543, 1250, 1368, 1593, 2123 |
| BpuMI | CCSGG | 2 cut(s) | 2708, 2709 |
| BsaBI | GATNNNNATC | 1 cut(s) | 786 |
| BsaI | GGTCTC | 1 cut(s) | 1523 |
| BsaJI | CCNNGG | 6 cut(s) | 112, 1774, 2337, 2428, 2640, 2707 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1260, 1708, 2287 |
| Bse1I | ACTGG | 3 cut(s) | 55, 948, 2086 |
| Bse21I | CCTNAGG | 4 cut(s) | 402, 505, 609, 2508 |
| Bse8I | GATNNNNATC | 1 cut(s) | 786 |
| BseBI | CCWGG | 3 cut(s) | 71, 1703, 2642 |
| BseDI | CCNNGG | 6 cut(s) | 112, 1774, 2337, 2428, 2640, 2707 |
| BseGI | GGATG | 3 cut(s) | 706, 820, 1330 |
| BseJI | GATNNNNATC | 1 cut(s) | 786 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1260, 1708, 2287 |
| BseNI | ACTGG | 3 cut(s) | 55, 948, 2086 |
| BseRI | GAGGAG | 3 cut(s) | 1637, 2456, 2798 |
| BseYI | CCCAGC | 1 cut(s) | 2055 |
| Bsh1236I | CGCG | 1 cut(s) | 2750 |
| BshFI | GGCC | 6 cut(s) | 169, 1307, 1864, 2054, 2085, 2324 |
| BsiHKCI | CYCGRG | 2 cut(s) | 572, 2707 |
| BsiSI | CCGG | 1 cut(s) | 2708 |
| BslFI | GGGAC | 3 cut(s) | 793, 1511, 2690 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1260, 1708, 2287 |
| BsmAI | GTCTC | 5 cut(s) | 285, 698, 1523, 2072, 2350 |
| BsmBI | CGTCTC | 1 cut(s) | 285 |
| BsmFI | GGGAC | 3 cut(s) | 793, 1511, 2690 |
| BsnI | GGCC | 6 cut(s) | 169, 1307, 1864, 2054, 2085, 2324 |
| Bso31I | GGTCTC | 1 cut(s) | 1523 |
| BsoBI | CYCGRG | 2 cut(s) | 572, 2707 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1414 |
| Bsp1407I | TGTACA | 1 cut(s) | 2829 |
| BspACI | CCGC | 8 cut(s) | 141, 446, 1261, 1304, 1684, 2608, 2750, 2804 |
| BspANI | GGCC | 6 cut(s) | 169, 1307, 1864, 2054, 2085, 2324 |
| BspFNI | CGCG | 1 cut(s) | 2750 |
| BspLI | GGNNCC | 4 cut(s) | 429, 1848, 2705, 2706 |
| BspMAI | CTGCAG | 2 cut(s) | 178, 1597 |
| BspMI | ACCTGC | 1 cut(s) | 181 |
| BspOI | GCTAGC | 1 cut(s) | 326 |
| BspPI | GGATC | 7 cut(s) | 194, 319, 422, 435, 2045, 2316, 2857 |
| BspQI | GCTCTTC | 2 cut(s) | 1353, 2531 |
| BspTI | CTTAAG | 1 cut(s) | 1729 |
| BspTNI | GGTCTC | 1 cut(s) | 1523 |
| BsrBI | CCGCTC | 3 cut(s) | 1261, 1684, 2804 |
| BsrGI | TGTACA | 1 cut(s) | 2829 |
| BsrI | ACTGG | 3 cut(s) | 55, 948, 2086 |
| BssECI | CCNNGG | 6 cut(s) | 112, 1774, 2337, 2428, 2640, 2707 |
| BssSI | CACGAG | 1 cut(s) | 924 |
| BssT1I | CCWWGG | 2 cut(s) | 112, 2428 |
| Bst2BI | CACGAG | 1 cut(s) | 924 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 1703, 2642 |
| Bst4CI | ACNGT | 3 cut(s) | 418, 637, 655 |
| Bst6I | CTCTTC | 7 cut(s) | 370, 462, 492, 1157, 1270, 1353, 2531 |
| BstAFI | CTTAAG | 1 cut(s) | 1729 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1592, 2239, 2248 |
| BstAUI | TGTACA | 1 cut(s) | 2829 |
| BstC8I | GCNNGC | 7 cut(s) | 324, 971, 1086, 2399, 2422, 2460, 2504 |
| BstDSI | CCRYGG | 1 cut(s) | 1774 |
| BstF5I | GGATG | 3 cut(s) | 706, 820, 1330 |
| BstFNI | CGCG | 1 cut(s) | 2750 |
| BstH2I | RGCGCY | 3 cut(s) | 57, 1709, 2002 |
| BstHHI | GCGC | 4 cut(s) | 56, 1708, 2001, 2420 |
| BstMAI | GTCTC | 5 cut(s) | 285, 698, 1523, 2072, 2350 |
| BstNI | CCWGG | 3 cut(s) | 71, 1703, 2642 |
| BstNSI | RCATGY | 3 cut(s) | 1771, 2506, 2851 |
| BstSCI | CCNGG | 5 cut(s) | 69, 1701, 2640, 2706, 2707 |
| BstSFI | CTRYAG | 6 cut(s) | 174, 636, 1509, 1593, 1929, 2361 |
| BstUI | CGCG | 1 cut(s) | 2750 |
| BstV2I | GAAGAC | 5 cut(s) | 261, 515, 855, 1037, 1770 |
| BstX2I | RGATCY | 4 cut(s) | 43, 427, 2308, 2862 |
| BstYI | RGATCY | 4 cut(s) | 43, 427, 2308, 2862 |
| Bsu36I | CCTNAGG | 4 cut(s) | 402, 505, 609, 2508 |
| BsuI | GTATCC | 2 cut(s) | 940, 1258 |
| BsuRI | GGCC | 6 cut(s) | 169, 1307, 1864, 2054, 2085, 2324 |
| BtgI | CCRYGG | 1 cut(s) | 1774 |
| BtsCI | GGATG | 3 cut(s) | 706, 820, 1330 |
| BtsI | GCAGTG | 1 cut(s) | 1758 |
| BtsIMutI | CAGTG | 5 cut(s) | 19, 48, 651, 1149, 1758 |
| BveI | ACCTGC | 1 cut(s) | 181 |
| Cac8I | GCNNGC | 7 cut(s) | 324, 971, 1086, 2399, 2422, 2460, 2504 |
| CaiI | CAGNNNCTG | 5 cut(s) | 344, 416, 593, 1708, 2348 |
| CfoI | GCGC | 4 cut(s) | 56, 1708, 2001, 2420 |
| Cfr13I | GGNCC | 7 cut(s) | 1306, 1789, 2053, 2083, 2278, 2323, 2704 |
| Cfr9I | CCCGGG | 1 cut(s) | 2707 |
| CseI | GACGC | 1 cut(s) | 1809 |
| Csp6I | GTAC | 4 cut(s) | 267, 1629, 2527, 2830 |
| CviQI | GTAC | 4 cut(s) | 267, 1629, 2527, 2830 |
| DraIII | CACNNNGTG | 1 cut(s) | 2552 |
| DriI | GACNNNNNGTC | 1 cut(s) | 127 |
| EaeI | YGGCCR | 1 cut(s) | 167 |
| Eam1104I | CTCTTC | 7 cut(s) | 370, 462, 492, 1157, 1270, 1353, 2531 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 7 cut(s) | 370, 462, 492, 1157, 1270, 1353, 2531 |
| Eco130I | CCWWGG | 2 cut(s) | 112, 2428 |
| Eco147I | AGGCCT | 1 cut(s) | 1864 |
| Eco24I | GRGCYC | 1 cut(s) | 1414 |
| Eco31I | GGTCTC | 1 cut(s) | 1523 |
| Eco32I | GATATC | 1 cut(s) | 784 |
| Eco47I | GGWCC | 3 cut(s) | 1789, 2278, 2704 |
| Eco47III | AGCGCT | 1 cut(s) | 2000 |
| Eco57I | CTGAAG | 9 cut(s) | 165, 473, 639, 1203, 1371, 1445, 2007, 2460, 2667 |
| Eco81I | CCTNAGG | 4 cut(s) | 402, 505, 609, 2508 |
| Eco88I | CYCGRG | 2 cut(s) | 572, 2707 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1789, 2278, 2704 |
| EcoRI | GAATTC | 1 cut(s) | 1945 |
| EcoRII | CCWGG | 3 cut(s) | 69, 1701, 2640 |
| EcoRV | GATATC | 1 cut(s) | 784 |
| EcoT14I | CCWWGG | 2 cut(s) | 112, 2428 |
| EcoT22I | ATGCAT | 1 cut(s) | 1125 |
| EcoT38I | GRGCYC | 1 cut(s) | 1414 |
| ErhI | CCWWGG | 2 cut(s) | 112, 2428 |
| Esp3I | CGTCTC | 1 cut(s) | 285 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1539, 1571, 2451, 2483, 2553, 2585 |
| FaqI | GGGAC | 3 cut(s) | 793, 1511, 2690 |
| FauI | CCCGC | 3 cut(s) | 1254, 1677, 2615 |
| FbaI | TGATCA | 2 cut(s) | 385, 1449 |
| FblI | GTMKAC | 1 cut(s) | 1856 |
| FokI | GGATG | 3 cut(s) | 713, 807, 1337 |
| FriOI | GRGCYC | 1 cut(s) | 1414 |
| GlaI | GCGC | 4 cut(s) | 55, 1707, 2000, 2419 |
| GsaI | CCCAGC | 1 cut(s) | 2059 |
| GsuI | CTGGAG | 1 cut(s) | 1698 |
| HaeII | RGCGCY | 3 cut(s) | 57, 1709, 2002 |
| HaeIII | GGCC | 6 cut(s) | 169, 1307, 1864, 2054, 2085, 2324 |
| HapII | CCGG | 1 cut(s) | 2708 |
| HgaI | GACGC | 1 cut(s) | 1809 |
| HhaI | GCGC | 4 cut(s) | 56, 1708, 2001, 2420 |
| Hin6I | GCGC | 4 cut(s) | 54, 1706, 1999, 2418 |
| HinP1I | GCGC | 4 cut(s) | 54, 1706, 1999, 2418 |
| HindIII | AAGCTT | 4 cut(s) | 1457, 1917, 2395, 2460 |
| HpaII | CCGG | 1 cut(s) | 2708 |
| HphI | GGTGA | 6 cut(s) | 743, 768, 1243, 2597, 2783, 2866 |
| Hpy166II | GTNNAC | 7 cut(s) | 658, 1857, 2588, 2774, 2815, 2845, 2857 |
| Hpy8I | GTNNAC | 7 cut(s) | 658, 1857, 2588, 2774, 2815, 2845, 2857 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 886 |
| HpyAV | CCTTC | 9 cut(s) | 223, 737, 1231, 1346, 1802, 1815, 2171, 2287, 2815 |
| HpyCH4III | ACNGT | 3 cut(s) | 418, 637, 655 |
| HpyCH4IV | ACGT | 2 cut(s) | 369, 2302 |
| HpySE526I | ACGT | 2 cut(s) | 369, 2302 |
| HspAI | GCGC | 4 cut(s) | 54, 1706, 1999, 2418 |
| KflI | GGGWCCC | 1 cut(s) | 2704 |
| Ksp22I | TGATCA | 2 cut(s) | 385, 1449 |
| LguI | GCTCTTC | 2 cut(s) | 1353, 2531 |
| LmnI | GCTCC | 3 cut(s) | 1624, 1741, 2836 |
| LweI | GCATC | 5 cut(s) | 139, 1110, 1288, 2550, 2624 |
| MaeII | ACGT | 2 cut(s) | 369, 2302 |
| MaeIII | GTNAC | 6 cut(s) | 221, 406, 509, 631, 1147, 2097 |
| MbiI | CCGCTC | 3 cut(s) | 1261, 1684, 2804 |
| MflI | RGATCY | 4 cut(s) | 43, 427, 2308, 2862 |
| MhlI | GDGCHC | 1 cut(s) | 1414 |
| MlsI | TGGCCA | 1 cut(s) | 169 |
| MluNI | TGGCCA | 1 cut(s) | 169 |
| MmeI | TCCRAC | 4 cut(s) | 1023, 1035, 1446, 2769 |
| Mox20I | TGGCCA | 1 cut(s) | 169 |
| Mph1103I | ATGCAT | 1 cut(s) | 1125 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2355 |
| MscI | TGGCCA | 1 cut(s) | 169 |
| MseI | TTAA | 8 cut(s) | 81, 318, 830, 959, 1491, 1730, 1835, 2090 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1128, 2852 |
| Msp20I | TGGCCA | 1 cut(s) | 169 |
| MspA1I | CMGCKG | 2 cut(s) | 143, 1985 |
| MspCI | CTTAAG | 1 cut(s) | 1729 |
| MspI | CCGG | 1 cut(s) | 2708 |
| MspR9I | CCNGG | 5 cut(s) | 71, 1703, 2642, 2708, 2709 |
| MvaI | CCWGG | 3 cut(s) | 71, 1703, 2642 |
| MvnI | CGCG | 1 cut(s) | 2750 |
| NciI | CCSGG | 2 cut(s) | 2708, 2709 |
| NheI | GCTAGC | 1 cut(s) | 322 |
| NlaIV | GGNNCC | 4 cut(s) | 429, 1848, 2705, 2706 |
| NmeAIII | GCCGAG | 1 cut(s) | 2318 |
| NmuCI | GTSAC | 2 cut(s) | 1147, 2097 |
| NsiI | ATGCAT | 1 cut(s) | 1125 |
| NspI | RCATGY | 3 cut(s) | 1771, 2506, 2851 |
| PaeI | GCATGC | 1 cut(s) | 2506 |
| PaqCI | CACCTGC | 1 cut(s) | 181 |
| PceI | AGGCCT | 1 cut(s) | 1864 |
| PciI | ACATGT | 1 cut(s) | 1767 |
| PciSI | GCTCTTC | 2 cut(s) | 1353, 2531 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 129 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2355 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1708 |
| PfoI | TCCNGGA | 1 cut(s) | 69 |
| PpuMI | RGGWCCY | 3 cut(s) | 1789, 2278, 2704 |
| PscI | ACATGT | 1 cut(s) | 1767 |
| PshBI | ATTAAT | 1 cut(s) | 1835 |
| Psp5II | RGGWCCY | 3 cut(s) | 1789, 2278, 2704 |
| Psp6I | CCWGG | 3 cut(s) | 69, 1701, 2640 |
| PspFI | CCCAGC | 1 cut(s) | 2055 |
| PspGI | CCWGG | 3 cut(s) | 69, 1701, 2640 |
| PspN4I | GGNNCC | 4 cut(s) | 429, 1848, 2705, 2706 |
| PspPI | GGNCC | 7 cut(s) | 1306, 1789, 2053, 2083, 2278, 2323, 2704 |
| PspPPI | RGGWCCY | 3 cut(s) | 1789, 2278, 2704 |
| PstI | CTGCAG | 2 cut(s) | 178, 1597 |
| PstNI | CAGNNNCTG | 5 cut(s) | 344, 416, 593, 1708, 2348 |
| PsuI | RGATCY | 4 cut(s) | 43, 427, 2308, 2862 |
| PvuII | CAGCTG | 1 cut(s) | 1985 |
| RsaI | GTAC | 4 cut(s) | 268, 1630, 2528, 2831 |
| RsaNI | GTAC | 4 cut(s) | 267, 1629, 2527, 2830 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1128, 2852 |
| SapI | GCTCTTC | 2 cut(s) | 1353, 2531 |
| SaqAI | TTAA | 8 cut(s) | 81, 318, 830, 959, 1491, 1730, 1835, 2090 |
| Sau96I | GGNCC | 7 cut(s) | 1306, 1789, 2053, 2083, 2278, 2323, 2704 |
| ScrFI | CCNGG | 5 cut(s) | 71, 1703, 2642, 2708, 2709 |
| SduI | GDGCHC | 1 cut(s) | 1414 |
| SfaNI | GCATC | 5 cut(s) | 139, 1110, 1288, 2550, 2624 |
| SfcI | CTRYAG | 6 cut(s) | 174, 636, 1509, 1593, 1929, 2361 |
| SinI | GGWCC | 3 cut(s) | 1789, 2278, 2704 |
| SmaI | CCCGGG | 1 cut(s) | 2709 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1128, 2852 |
| SmlI | CTYRAG | 6 cut(s) | 558, 1229, 1383, 1608, 1729, 2102 |
| SmoI | CTYRAG | 6 cut(s) | 558, 1229, 1383, 1608, 1729, 2102 |
| SpeI | ACTAGT | 3 cut(s) | 518, 950, 2653 |
| SphI | GCATGC | 1 cut(s) | 2506 |
| SseBI | AGGCCT | 1 cut(s) | 1864 |
| SsiI | CCGC | 8 cut(s) | 141, 446, 1261, 1304, 1684, 2608, 2750, 2804 |
| SspI | AATATT | 1 cut(s) | 482 |
| StuI | AGGCCT | 1 cut(s) | 1864 |
| StyD4I | CCNGG | 5 cut(s) | 69, 1701, 2640, 2706, 2707 |
| StyI | CCWWGG | 2 cut(s) | 112, 2428 |
| TaaI | ACNGT | 3 cut(s) | 418, 637, 655 |
| TaiI | ACGT | 2 cut(s) | 372, 2305 |
| TaqI | TCGA | 9 cut(s) | 102, 120, 465, 1188, 1482, 1951, 2182, 2572, 2800 |
| TatI | WGTACW | 1 cut(s) | 2829 |
| TauI | GCSGC | 3 cut(s) | 143, 1307, 2753 |
| Tru1I | TTAA | 8 cut(s) | 81, 318, 830, 959, 1491, 1730, 1835, 2090 |
| Tru9I | TTAA | 8 cut(s) | 81, 318, 830, 959, 1491, 1730, 1835, 2090 |
| TscAI | CASTG | 5 cut(s) | 19, 55, 658, 1156, 1758 |
| TseFI | GTSAC | 2 cut(s) | 1147, 2097 |
| Tsp45I | GTSAC | 2 cut(s) | 1147, 2097 |
| TspGWI | ACGGA | 4 cut(s) | 267, 813, 1763, 2514 |
| TspMI | CCCGGG | 1 cut(s) | 2707 |
| TspRI | CASTG | 5 cut(s) | 19, 55, 658, 1156, 1758 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1708 |
| Vha464I | CTTAAG | 1 cut(s) | 1729 |
| VpaK11BI | GGWCC | 3 cut(s) | 1789, 2278, 2704 |
| VspI | ATTAAT | 1 cut(s) | 1835 |
| XapI | RAATTY | 8 cut(s) | 65, 97, 723, 763, 894, 1945, 2374, 2483 |
| XbaI | TCTAGA | 1 cut(s) | 2047 |
| XceI | RCATGY | 3 cut(s) | 1771, 2506, 2851 |
| XmaI | CCCGGG | 1 cut(s) | 2707 |
| XmiI | GTMKAC | 1 cut(s) | 1856 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2355 |
| Zsp2I | ATGCAT | 1 cut(s) | 1125 |