Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006014.1

Orthogroup ID

OG0004830

Physical Location & Seq

Genomic Coordinates Forward (+)

109789 .. 111037

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006014.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggcgtggttcagtgggaaagtctcgttggggaacttccccgatctcgccggcgctgtaaataagctccaggagagcgtcaagaacatcgagaagaatttcgataccgccctcgggtttgaagagaaggagaagcttgaatccgccaatgaagcttcaggattatggccttcatctacagaaagaaaagcgctatttgatcctgttatgtcctttatggggcaaaagaatgaggatgacactgttgaatcatcacagaaagctgagtcttctgaggctccaccacctaaggttgagaaatcaccagcagagattgaatcttcaccaaaggttgagatatcatcagtggagcctaaatctccacctaaggttgagaaatcgtcagtggagcctgaatctctacctaaggttgagaaatcatcagtggagcctgaatcttcacctaaggttgagaaatcatcagtggagcctgaacctccacaatgttcatctgcagttgacgaaaaggatggggcaagtgaaacattaccacattctgtaactgaacagactgctgctaaggaggaaaatgacgttgccgaggaaaaaaaagatgaaaatcatgctgagactgcagaagaaacaaagactttgtcattagagcctgagagatcagagtctcaatcgccctcagtgccagttggggcaaatgagcctaccatgagtgcctcatcatcagattttgttggttctcaagaagaagacaataagatttcagtaggggcactctcagaactttcagaatcagctcaaggactgtcatctttttatatatgtaaacatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMF_DNA_bd TMF_TATA_bd

Protein Analysis

275

Amino Acids

29.52

Weight (kDa)

4.47

Isoelectric Point (pI)

77.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79830 AT1G79830 AT1G79830 AT1G79830 AT1G79830
fragaria_vesca	FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822
malus_domestica	MD09G1208900.v1.1 MD17G1190500.v1.1
prunus_persica	Prupe.2G059800_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.5G245900_v2.0.a1 Prupe.5G245900_v2.0.a1
pyrus_communis	pycom09g12520
rosa_chinensis	RchiOBHm_Chr2g0139071
rosa_laevigata	RLG00000019788
rosa_multiflora	Rmu_sc0006014.1_g000014
rosa_roxburghii	Rroxscaffold_2G00105700
rosa_rugosa	Rorug02G0354600
rosa_samantha	Rh2AG404600 Rh2BG414600 Rh2CG390900 Rh2DG424300
rosa_wichuraiana	Rw2G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	108, 144
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	141
AfeI	AGCGCT	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	114, 219
AgsI	TTSAA	4 cut(s)	122, 140, 248, 317
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	5 cut(s)	67, 136, 155, 263, 788
AluI	AGCT	5 cut(s)	67, 136, 155, 263, 788
Alw26I	GTCTC	3 cut(s)	28, 602, 663
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	192
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	97
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	56, 193
AsuHPI	GGTGA	3 cut(s)	294, 315, 432
AvaI	CYCGRG	1 cut(s)	113
AxyI	CCTNAGG	4 cut(s)	288, 366, 405, 444
BaeGI	GKGCMC	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	261, 747
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	3 cut(s)	28, 602, 663
BfmI	CTRYAG	3 cut(s)	177, 492, 612
BfoI	RGCGCY	2 cut(s)	57, 194
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	113
BmiI	GGNNCC	5 cut(s)	279, 351, 390, 429, 468
BmrFI	CCNGG	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	261, 747
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	717, 774
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	112, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 219
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	677
Bse21I	CCTNAGG	4 cut(s)	288, 366, 405, 444
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	112, 579
BseGI	GGATG	2 cut(s)	241, 514
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	114, 219
BseMII	CTCAG	6 cut(s)	255, 264, 597, 636, 684, 783
BseNI	ACTGG	1 cut(s)	677
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	114, 219
BsmAI	GTCTC	3 cut(s)	28, 602, 663
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	3 cut(s)	43, 199, 650
BspACI	CCGC	2 cut(s)	108, 144
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	6 cut(s)	256, 265, 598, 637, 683, 782
BspLI	GGNNCC	5 cut(s)	279, 351, 390, 429, 468
BspMAI	CTGCAG	2 cut(s)	496, 616
BspPI	GGATC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	112, 579
BssMI	GATC	3 cut(s)	43, 199, 650
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	244, 798
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	241, 514
BstH2I	RGCGCY	2 cut(s)	57, 194
BstHHI	GCGC	2 cut(s)	56, 193
BstKTI	GATC	3 cut(s)	46, 202, 653
BstMAI	GTCTC	3 cut(s)	28, 602, 663
BstMBI	GATC	3 cut(s)	43, 199, 650
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 611, 673
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	3 cut(s)	177, 492, 612
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	2 cut(s)	261, 747
Bsu36I	CCTNAGG	4 cut(s)	288, 366, 405, 444
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	241, 514
BtsIMutI	CAGTG	7 cut(s)	19, 240, 351, 390, 429, 468, 678
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	56, 193
Cfr10I	RCCGGY	1 cut(s)	50
CseI	GACGC	1 cut(s)	67
CviAII	CATG	3 cut(s)	602, 700, 821
DpnI	GATC	3 cut(s)	45, 201, 652
DpnII	GATC	3 cut(s)	43, 199, 650
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	4 cut(s)	288, 366, 405, 444
Eco88I	CYCGRG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	339
FaeI	CATG	3 cut(s)	605, 703, 824
FaiI	YATR	9 cut(s)	166, 209, 218, 603, 701, 810, 812, 814, 822
FatI	CATG	3 cut(s)	601, 699, 820
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	248, 521
Fsp4HI	GCNGC	1 cut(s)	555
GlaI	GCGC	2 cut(s)	55, 192
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	2 cut(s)	57, 194
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	2 cut(s)	56, 193
Hin1II	CATG	3 cut(s)	605, 703, 824
Hin6I	GCGC	2 cut(s)	54, 191
HinP1I	GCGC	2 cut(s)	54, 191
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	134, 153
HinfI	GANTC	8 cut(s)	140, 248, 266, 317, 395, 434, 656, 782
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	294, 315, 432
Hpy166II	GTNNAC	2 cut(s)	499, 818
Hpy188I	TCNGA	5 cut(s)	274, 655, 718, 772, 781
Hpy188III	TCNNGA	4 cut(s)	82, 91, 159, 734
Hpy8I	GTNNAC	2 cut(s)	499, 818
HpyAV	CCTTC	2 cut(s)	121, 180
HpyCH4III	ACNGT	2 cut(s)	244, 798
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	2 cut(s)	494, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 611, 673
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	605, 703, 824
HspAI	GCGC	2 cut(s)	54, 191
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	43, 199, 650
LmnI	GCTCC	6 cut(s)	72, 283, 349, 388, 427, 466
Lsp1109I	GCAGC	1 cut(s)	541
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	3 cut(s)	45, 201, 652
MboI	GATC	3 cut(s)	43, 199, 650
MboII	GAAGA	8 cut(s)	106, 134, 261, 312, 429, 629, 749, 752
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	275, 665
MnlI	CCTC	8 cut(s)	122, 226, 268, 486, 556, 574, 679, 718
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	98
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	152, 611, 673
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	3 cut(s)	43, 199, 650
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	605, 703, 824
NlaIV	GGNNCC	5 cut(s)	279, 351, 390, 429, 468
NmeAIII	GCCGAG	1 cut(s)	604
NspI	RCATGY	1 cut(s)	824
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	6 cut(s)	140, 248, 317, 395, 434, 782
PflFI	GACNNNGTC	1 cut(s)	631
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	2 cut(s)	274, 664
PpsI	GAGTC	2 cut(s)	274, 664
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	5 cut(s)	279, 351, 390, 429, 468
PstI	CTGCAG	2 cut(s)	496, 616
PsyI	GACNNNGTC	1 cut(s)	631
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	3 cut(s)	43, 199, 650
SchI	GAGTC	2 cut(s)	275, 665
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	766
SfcI	CTRYAG	3 cut(s)	177, 492, 612
SgrAI	CRCCGGYG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	732, 789
SmoI	CTYRAG	2 cut(s)	732, 789
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	108, 144
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	244, 798
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	90, 102
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	6 cut(s)	140, 248, 317, 395, 434, 782
TscAI	CASTG	7 cut(s)	19, 247, 351, 390, 429, 468, 678
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	4 cut(s)	162, 165, 477, 609
TspRI	CASTG	7 cut(s)	19, 247, 351, 390, 429, 468, 678
Tth111I	GACNNNGTC	1 cut(s)	631
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.