MD17G1190500.v1.1

Golgin candidate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
22699934 .. 22709881
9948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1190500.v1.1.491

Sequence Viewer

Length: 3045 bp
ATGACACTTTTACGCGAATCACGGAGAAGCTTCTTCCTTCAGCTCAACGAAGCATACCGCCATGATTTGATCCCCAAATCCGCCGGCATTAATCGGACCCCCAGAACCAGAATGGCGTGGTTCAGTGGGAAAGTGTCTTTGGGGAACTTTCCCGATCTCGCCGGGGCCGTGAACAAGCTCCAGGAGAGCGTTAAGAACATCGAGAAGAATTTCGATAGCGCCCTTGGGTTCGAAGACAGAGAGAAAGCCGAATCCGGCAATGAAGCTTCAGGATTATGGCCTTCATCTACTGAAAGGATTATGTCCTTTATGGGGCAACAAGATGAGGAAAGTAATGTTGAATCATCAGAGAAAGCCCGGTCTTCTGAGTTTCCACCTAAGGTTGACAAATCACCTGGGGAAACTGAATCTCTACAGATAACATCTACGGTTGAGGAGAAAGAAGGGGCCAAAGCTGAAACTTTGCAACAATCTACAACTGAACAGATGGCTGCTAAAGAGGAAAATGAAGTTGTCAAGGAAGAAAAAGATGATAACCCTGCTACGGTTGTGGGGGAAACAAAGACTGTGATAGCAGAGTCTGAAAAATCTGAATCTGAGTCTTCTTCAGTGCCAGTTGAACAACCTGAATCGACTGTTAAGAATGCTGGCCCATCAGATTCTGTTGATTCTCAAGAACACAACACGATTTCTATGGCGGGACCCTCAGAAAATTCAGAATCATCGCAGGAAAAGTCAGGATCTGTTGATGCGGATCAAGTTGAGGAAGCTAGTACTGCTCTGCTTGGTGGGGCACATGGTATAGTCGATGTGCATGAGAATTTGGATGAACATAGACCACAAGTAGAGAAGGATGGACATATGACGCAGGTTGAAGAGAATGTTGATATGATTTCTCCAGTTGAAGCTGAGTCATCGACTGATAGTCAGCCTGGAGGTTTGGATGAGCCCTCCGTCTCAACGGAGGAGATTCACAATGTTGGTAGATCTTCTACTAATCAACTACCCAATGTGCATCCTTCTGATGATGCAGTTTCTGAATTGGCTTTGAAAGAGCAAAATGCTGTTGTTGAGGAACCTGAAGTTGATCAACGAGCTGATGATAATGAAGCTGACGTTAAAGAGCAGAGCTCAGGAGAAAATGCATCTGGCTCTTCAGATGCTTTGATTGAATTGGAGAAGGCAAAGATGGAGACTAAAATGATGGAAGCTGCATTGCTAGGAGCTGCAAGACAAGCTCAGGCAAAAGCTGATGAGATTGCAAAGTTTATGAACGAAAATGAGCAATTAAAAACTGTGATTGAGGATTTGAAAAGAAAATCCAGTGATGCAGAAGTTGAGTCTCTGCGAGAGGAATATCATCAAAGGGTTGCAACACTTGAAAGGAAGGTTTATGCTCTTACTAAGGAAAGGGACACACTTAGGCGGGAACAGAATAAGAAAAGTGACGCAGCTGCTCTTCTGAAGGAAAAAGATGAAATAATTAATCAAGTTATGGCTGAAGGCGAAGAGCTTTCAAAAAAGCAGGCTGCTCAAGAAGCTCAGATTAGGAAATTAAGGGCTCAGATCAGAGAGTTGGAAGAAGAGAAGAAAGGGTTGAGTACTAAACTTCAGGTAGAAGAGAATAAAGTAGAGAGCATTAAGAAGGACAAGACAGCAACAGAAAAGTTGCTGCAGGAAAGCATTGAAAAGCACCAAACAGAACTTGCATTACAGAAAGAGTATTATACTAATGCTTTGGCTGCTGCCAAGGAGGCAGAAGCTATGGCCGAGGCACGAGCCAACGATGAAGCCAGATCTGAACTAGAGAAGCGTCTAAAAGAGGCCGAGGAACGTGAGGCTTTGCTAGTTCAGGCACTTGAAGAGTTGCGGCAGACTCTAACTAGAAAGGAACAGCAGGCAGTATTTAGAGAAGACATGCTTCGCCGGGACATTGAGGATCTTCAAAAACGTTATCAAGCAAGTGAGCGCCGATGTGAGGAGTTGATTACCCAAGTACCAGAATCTACTAGGCCTCTTCTTAGGCAGATTGAAGCTATGCAGGAAACAACTTCAAGAAGAGCAGAAGCTTGGGCAGCTGTTGAGAGGTCTCTTAACTCTCGACTCCAGGAAGCAGAGGCCAAAGCTGCAGCTGCTGAGGAAAGAGAGCAATCTGTTAATGAGCGCTTGTCTCAAACCTTCTCTAGAATTAATGTTCTTGAGGCTCAGATTTCATGTCTTAGAGCTGAGCAATCCCAGTTAAGTAAGTCTGTTGAAAAGGAGAGACAAAGAGCCGCTGAAAATAGGCAGGAGTACCTTGCAGCAAAGGAGGAAGCTGACACTCAAGAAGGCTGTGCAAGCCAGCTTGAAGAAGAAATTAGGGAACTCAGGCGAAAACATAAGCAAGATTTACAAGATGCATTGATGCACAGGGAACTGCTACAGCAGGAGGTAGAAAGGGAGAAAGCTGCTAGGTTAGAGTTGGAAAAGACGGCTCGTGTCCGTTCTGCTACTGTATCTGATCAGACTACTATAACAAGGCACAATTCAGCTGTAGAGAATGGAAGCTTGAGCCGAAAACTCTCAAGTGCTAGCAGCCTAGGGAGCATGGAGGAAAGCTATTTTCTGCAAGCATCTTTAGACTCATCCGATGGTTTCTCTGAGAGGAGAAATGCTGGAGAGGCAACCATGAGTCCGTACTATATGAAGAGCATGACACCTAGTGCTTTTGAAGCTTCTCTTCGTCAGAAGGAGGGTGAACTAGCATCTTACATGTCTCGTTTGGCATCCATGGAATCTATTCGTGATTCTCTTGCTGAGGAGTTGGTCAAAATGACAGAACAGTGTGAAAAGTTAAGGACAGAGGCTGTCATGTTGCCTGGTATGCGAGCAGAGCTAGATGCACTAAGGAGACGGCACTCTGCTGCACTGGAGCTAATGGGCGAACGCGATGAGGAGCTGGAGGAACTTCGTGCGGATATTGTGGACTTGAAGGAGATGTACAGAGAGCAAGTAAACTTGCTTGTCAACAAGATCCAGATAATGAGCTCATCCGTTGGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1015

Amino Acids

113.71

Weight (kDa)

4.82

Isoelectric Point (pI)

66.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMF_DNA_bd PF12329 483 - 554 1.7e-14 TATA element modulatory factor 1 DNA binding
TMF_TATA_bd PF12325 897 - 1000 1.2e-27 TATA element modulatory factor 1 TATA binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 859
AccII CGCG 2 cut(s) 15, 2928
AciI CCGC 8 cut(s) 58, 81, 698, 752, 1426, 1870, 2274, 2954
AclI AACGTT 1 cut(s) 1951
AclWI GGATC 5 cut(s) 64, 748, 762, 1947, 3007
AcoI YGGCCR 1 cut(s) 1767
AcsI RAATTY 3 cut(s) 208, 712, 820
AcuI CTGAAG 8 cut(s) 23, 252, 591, 1101, 1140, 1484, 1521, 1595
AdeI CACNNNGTG 1 cut(s) 2702
AfaI GTAC 6 cut(s) 775, 1603, 1998, 2294, 2678, 2981
AfeI AGCGCT 1 cut(s) 2165
AfiI CCNNNNNNNGG 3 cut(s) 312, 544, 1978
AflIII ACRYGT 1 cut(s) 2751
AhdI GACNNNNNGTC 1 cut(s) 924
AjnI CCWGG 5 cut(s) 180, 394, 931, 2106, 2857
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
Alw21I GWGCWC 2 cut(s) 1133, 3029
Alw26I GTCTC 8 cut(s) 961, 1187, 1347, 2094, 2175, 2257, 2760, 2884
AlwI GGATC 5 cut(s) 64, 748, 762, 1947, 3007
AlwNI CAGNNNCTG 6 cut(s) 581, 662, 743, 1037, 2135, 2846
Aor51HI AGCGCT 1 cut(s) 2165
AoxI GGCC 8 cut(s) 165, 278, 447, 649, 1767, 1824, 2012, 2118
ApoI RAATTY 3 cut(s) 208, 712, 820
AseI ATTAAT 3 cut(s) 90, 1485, 2190
Asp700I GAANNNNTTC 2 cut(s) 209, 2778
AspA2I CCTAGG 1 cut(s) 2578
AspLEI GCGC 3 cut(s) 221, 1971, 2166
AspS9I GGNCC 5 cut(s) 96, 165, 447, 650, 701
AsuC2I CCSGG 3 cut(s) 163, 358, 1928
AsuHPI GGTGA 2 cut(s) 384, 2747
AsuII TTCGAA 1 cut(s) 231
AsuNHI GCTAGC 1 cut(s) 2570
AvaII GGWCC 2 cut(s) 96, 701
AvrII CCTAGG 1 cut(s) 2578
AxyI CCTNAGG 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 796
BaeI ACNNNNGTAYC 2 cut(s) 1980, 2013
BanII GRGCYC 4 cut(s) 951, 1133, 1564, 3029
BarI GAAGNNNNNNTAC 2 cut(s) 2963, 2995
BauI CACGAG 2 cut(s) 1776, 2475
BbsI GAAGAC 4 cut(s) 240, 354, 594, 1920
Bbv12I GWGCWC 2 cut(s) 1133, 3029
BbvCI CCTCAGC 2 cut(s) 2136, 2796
BccI CCATC 6 cut(s) 481, 661, 848, 1183, 1198, 2624
BceAI ACGGC 3 cut(s) 152, 2487, 2909
BciT130I CCWGG 5 cut(s) 182, 396, 933, 2108, 2859
BclI TGATCA 2 cut(s) 1087, 2500
BcnI CCSGG 3 cut(s) 163, 358, 1928
BcoDI GTCTC 8 cut(s) 961, 1187, 1347, 2094, 2175, 2257, 2760, 2884
BfmI CTRYAG 5 cut(s) 413, 1673, 2127, 2420, 2532
BfoI RGCGCY 3 cut(s) 222, 1972, 2167
BfuAI ACCTGC 1 cut(s) 859
BglI GCCNNNNNGGC 1 cut(s) 1754
BglII AGATCT 2 cut(s) 986, 1796
BlnI CCTAGG 1 cut(s) 2578
BlpI GCTNAGC 1 cut(s) 2226
BmcAI AGTACT 2 cut(s) 775, 1603
Bme1390I CCNGG 8 cut(s) 163, 182, 358, 396, 933, 1928, 2108, 2859
Bme18I GGWCC 2 cut(s) 96, 701
BmeRI GACNNNNNGTC 1 cut(s) 924
BmgT120I GGNCC 5 cut(s) 96, 165, 447, 650, 701
BmiI GGNNCC 7 cut(s) 98, 166, 448, 702, 703, 1077, 3040
BmrFI CCNGG 8 cut(s) 163, 182, 358, 396, 933, 1928, 2108, 2859
BmrI ACTGGG 1 cut(s) 2230
BmtI GCTAGC 1 cut(s) 2574
BmuI ACTGGG 1 cut(s) 2230
BpiI GAAGAC 4 cut(s) 240, 354, 594, 1920
BplI GAGNNNNNCTC 2 cut(s) 1115, 1147
BpmI CTGGAG 7 cut(s) 164, 882, 954, 2090, 2676, 2930, 2960
Bpu10I CCTNAGC 4 cut(s) 1132, 1239, 2136, 2796
Bpu1102I GCTNAGC 1 cut(s) 2226
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 6 cut(s) 657, 1518, 2219, 2307, 2548, 2569
BpuMI CCSGG 3 cut(s) 163, 358, 1928
BsaBI GATNNNNATC 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 2094
BsaJI CCNNGG 8 cut(s) 162, 223, 395, 1749, 1770, 1827, 2578, 2769
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 544, 1978
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 5 cut(s) 614, 899, 1323, 2236, 2913
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 2 cut(s) 265, 1214
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 5 cut(s) 182, 396, 933, 2108, 2859
BseDI CCNNGG 8 cut(s) 162, 223, 395, 1749, 1770, 1827, 2578, 2769
BseGI GGATG 7 cut(s) 832, 859, 949, 1015, 2624, 2765, 3029
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 3 cut(s) 312, 544, 1978
BseMI GCAATG 2 cut(s) 265, 1214
BseNI ACTGG 5 cut(s) 614, 899, 1323, 2236, 2913
BseRI GAGGAG 6 cut(s) 449, 980, 1994, 2659, 2813, 2948
BseSI GKGCMC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 2889
Bsh1236I CGCG 2 cut(s) 15, 2928
BshFI GGCC 8 cut(s) 167, 280, 449, 651, 1769, 1826, 2014, 2120
BsiHKAI GWGCWC 2 cut(s) 1133, 3029
BsiSI CCGG 5 cut(s) 84, 162, 255, 358, 1927
BslFI GGGAC 3 cut(s) 714, 1427, 1943
BslI CCNNNNNNNGG 3 cut(s) 312, 544, 1978
BsmAI GTCTC 8 cut(s) 961, 1187, 1347, 2094, 2175, 2257, 2760, 2884
BsmBI CGTCTC 2 cut(s) 961, 2884
BsmFI GGGAC 3 cut(s) 714, 1427, 1943
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 8 cut(s) 167, 280, 449, 651, 1769, 1826, 2014, 2120
Bso31I GGTCTC 1 cut(s) 2094
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 5 cut(s) 796, 951, 1133, 1564, 3029
Bsp1407I TGTACA 1 cut(s) 2979
Bsp1720I GCTNAGC 1 cut(s) 2226
Bsp19I CCATGG 1 cut(s) 2769
BspACI CCGC 8 cut(s) 58, 81, 698, 752, 1426, 1870, 2274, 2954
BspANI GGCC 8 cut(s) 167, 280, 449, 651, 1769, 1826, 2014, 2120
BspFNI CGCG 2 cut(s) 15, 2928
BspLI GGNNCC 7 cut(s) 98, 166, 448, 702, 703, 1077, 3040
BspMAI CTGCAG 2 cut(s) 1677, 2131
BspMI ACCTGC 1 cut(s) 859
BspOI GCTAGC 1 cut(s) 2574
BspPI GGATC 5 cut(s) 64, 748, 762, 1947, 3007
BspQI GCTCTTC 5 cut(s) 1159, 1464, 1503, 2053, 2681
BspT104I TTCGAA 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 2094
BsrDI GCAATG 2 cut(s) 265, 1214
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 2979
BsrI ACTGG 5 cut(s) 614, 899, 1323, 2236, 2913
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 8 cut(s) 162, 223, 395, 1749, 1770, 1827, 2578, 2769
BssSI CACGAG 2 cut(s) 1776, 2475
BssT1I CCWWGG 4 cut(s) 223, 1749, 2578, 2769
Bst2BI CACGAG 2 cut(s) 1776, 2475
Bst2UI CCWGG 5 cut(s) 182, 396, 933, 2108, 2859
Bst4CI ACNGT 7 cut(s) 430, 547, 568, 637, 1297, 2494, 2823
BstAUI TGTACA 1 cut(s) 2979
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 9 cut(s) 85, 649, 1527, 1899, 2338, 2342, 2572, 2610, 2868
BstDSI CCRYGG 1 cut(s) 2769
BstF5I GGATG 7 cut(s) 832, 859, 949, 1015, 2624, 2765, 3029
BstFNI CGCG 2 cut(s) 15, 2928
BstH2I RGCGCY 3 cut(s) 222, 1972, 2167
BstHHI GCGC 3 cut(s) 221, 1971, 2166
BstMAI GTCTC 8 cut(s) 961, 1187, 1347, 2094, 2175, 2257, 2760, 2884
BstNI CCWGG 5 cut(s) 182, 396, 933, 2108, 2859
BstNSI RCATGY 2 cut(s) 1921, 2755
BstSCI CCNGG 8 cut(s) 161, 180, 356, 394, 931, 1926, 2106, 2857
BstSFI CTRYAG 5 cut(s) 413, 1673, 2127, 2420, 2532
BstSLI GKGCMC 1 cut(s) 796
BstUI CGCG 2 cut(s) 15, 2928
BstV2I GAAGAC 4 cut(s) 240, 354, 594, 1920
BstX2I RGATCY 5 cut(s) 740, 986, 1796, 1939, 3012
BstYI RGATCY 5 cut(s) 740, 986, 1796, 1939, 3012
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 8 cut(s) 167, 280, 449, 651, 1769, 1826, 2014, 2120
BtgI CCRYGG 1 cut(s) 2769
BtgZI GCGATG 2 cut(s) 708, 2943
BtsCI GGATG 7 cut(s) 832, 859, 949, 1015, 2624, 2765, 3029
BtsIMutI CAGTG 5 cut(s) 130, 615, 1330, 2828, 2906
BveI ACCTGC 1 cut(s) 859
Cac8I GCNNGC 9 cut(s) 85, 649, 1527, 1899, 2338, 2342, 2572, 2610, 2868
CaiI CAGNNNCTG 6 cut(s) 581, 662, 743, 1037, 2135, 2846
CfoI GCGC 3 cut(s) 221, 1971, 2166
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 5 cut(s) 96, 165, 447, 650, 701
CseI GACGC 3 cut(s) 874, 1457, 1802
Csp6I GTAC 6 cut(s) 774, 1602, 1997, 2293, 2677, 2980
CviQI GTAC 6 cut(s) 774, 1602, 1997, 2293, 2677, 2980
DraIII CACNNNGTG 1 cut(s) 2702
DriI GACNNNNNGTC 1 cut(s) 924
EaeI YGGCCR 1 cut(s) 1767
Eam1105I GACNNNNNGTC 1 cut(s) 924
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 2 cut(s) 1131, 3027
Eco130I CCWWGG 4 cut(s) 223, 1749, 2578, 2769
Eco147I AGGCCT 1 cut(s) 2014
Eco24I GRGCYC 4 cut(s) 951, 1133, 1564, 3029
Eco31I GGTCTC 1 cut(s) 2094
Eco47I GGWCC 2 cut(s) 96, 701
Eco47III AGCGCT 1 cut(s) 2165
Eco53kI GAGCTC 2 cut(s) 1131, 3027
Eco57I CTGAAG 8 cut(s) 23, 252, 591, 1101, 1140, 1484, 1521, 1595
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 2 cut(s) 1131, 3027
EcoO109I RGGNCCY 1 cut(s) 701
EcoRII CCWGG 5 cut(s) 180, 394, 931, 2106, 2857
EcoT14I CCWWGG 4 cut(s) 223, 1749, 2578, 2769
EcoT22I ATGCAT 2 cut(s) 1147, 2401
EcoT38I GRGCYC 4 cut(s) 951, 1133, 1564, 3029
ErhI CCWWGG 4 cut(s) 223, 1749, 2578, 2769
Esp3I CGTCTC 2 cut(s) 961, 2884
FalI AAGNNNNNCTT 4 cut(s) 1905, 1937, 2703, 2735
FaqI GGGAC 3 cut(s) 714, 1427, 1943
FauI CCCGC 2 cut(s) 691, 1419
FauNDI CATATG 1 cut(s) 861
FbaI TGATCA 2 cut(s) 1087, 2500
FokI GGATG 7 cut(s) 839, 866, 956, 1002, 2611, 2752, 3016
FriOI GRGCYC 4 cut(s) 951, 1133, 1564, 3029
GlaI GCGC 3 cut(s) 220, 1970, 2165
GsuI CTGGAG 7 cut(s) 164, 882, 954, 2090, 2676, 2930, 2960
HaeII RGCGCY 3 cut(s) 222, 1972, 2167
HaeIII GGCC 8 cut(s) 167, 280, 449, 651, 1769, 1826, 2014, 2120
HapII CCGG 5 cut(s) 84, 162, 255, 358, 1927
HgaI GACGC 3 cut(s) 874, 1457, 1802
HhaI GCGC 3 cut(s) 221, 1971, 2166
Hin6I GCGC 3 cut(s) 219, 1969, 2164
HinP1I GCGC 3 cut(s) 219, 1969, 2164
HincII GTYRAC 2 cut(s) 385, 3007
HindII GTYRAC 2 cut(s) 385, 3007
HindIII AAGCTT 5 cut(s) 28, 264, 2067, 2545, 2712
HpaII CCGG 5 cut(s) 84, 162, 255, 358, 1927
HphI GGTGA 2 cut(s) 384, 2747
Hpy166II GTNNAC 6 cut(s) 172, 385, 2738, 2965, 2995, 3007
Hpy8I GTNNAC 6 cut(s) 172, 385, 2738, 2965, 2995, 3007
HpyCH4III ACNGT 7 cut(s) 430, 547, 568, 637, 1297, 2494, 2823
HpyCH4IV ACGT 3 cut(s) 1116, 1834, 1951
HpySE526I ACGT 3 cut(s) 1116, 1834, 1951
HspAI GCGC 3 cut(s) 219, 1969, 2164
KflI GGGWCCC 1 cut(s) 701
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 2 cut(s) 1087, 2500
LguI GCTCTTC 5 cut(s) 1159, 1464, 1503, 2053, 2681
LmnI GCTCC 6 cut(s) 183, 1223, 2583, 2911, 2935, 3038
MaeII ACGT 3 cut(s) 1116, 1834, 1951
MaeIII GTNAC 1 cut(s) 1445
MflI RGATCY 5 cut(s) 740, 986, 1796, 1939, 3012
MhlI GDGCHC 5 cut(s) 796, 951, 1133, 1564, 3029
MlyI GAGTC 8 cut(s) 587, 608, 920, 1349, 1870, 2097, 2615, 2680
MmeI TCCRAC 3 cut(s) 1557, 2442, 3016
Mph1103I ATGCAT 2 cut(s) 1147, 2401
MroNI GCCGGC 1 cut(s) 83
MroXI GAANNNNTTC 2 cut(s) 209, 2778
MspA1I CMGCKG 5 cut(s) 1454, 2078, 2132, 2276, 2531
MspI CCGG 5 cut(s) 84, 162, 255, 358, 1927
MspR9I CCNGG 8 cut(s) 163, 182, 358, 396, 933, 1928, 2108, 2859
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 5 cut(s) 182, 396, 933, 2108, 2859
MvnI CGCG 2 cut(s) 15, 2928
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 3 cut(s) 163, 358, 1928
NcoI CCATGG 1 cut(s) 2769
NdeI CATATG 1 cut(s) 861
NgoMIV GCCGGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 2570
NlaIV GGNNCC 7 cut(s) 98, 166, 448, 702, 703, 1077, 3040
NmeAIII GCCGAG 2 cut(s) 1795, 1852
NmuCI GTSAC 1 cut(s) 1445
NsiI ATGCAT 2 cut(s) 1147, 2401
NspI RCATGY 2 cut(s) 1921, 2755
NspV TTCGAA 1 cut(s) 231
PceI AGGCCT 1 cut(s) 2014
PciI ACATGT 1 cut(s) 2751
PciSI GCTCTTC 5 cut(s) 1159, 1464, 1503, 2053, 2681
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 85
PdmI GAANNNNTTC 2 cut(s) 209, 2778
PfoI TCCNGGA 2 cut(s) 180, 2106
PleI GAGTC 8 cut(s) 586, 607, 919, 1348, 1870, 2097, 2615, 2679
PpsI GAGTC 8 cut(s) 586, 607, 919, 1348, 1870, 2097, 2615, 2679
PpuMI RGGWCCY 1 cut(s) 701
PscI ACATGT 1 cut(s) 2751
PshBI ATTAAT 3 cut(s) 90, 1485, 2190
Psp124BI GAGCTC 2 cut(s) 1133, 3029
Psp1406I AACGTT 1 cut(s) 1951
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 5 cut(s) 180, 394, 931, 2106, 2857
PspGI CCWGG 5 cut(s) 180, 394, 931, 2106, 2857
PspN4I GGNNCC 7 cut(s) 98, 166, 448, 702, 703, 1077, 3040
PspPI GGNCC 5 cut(s) 96, 165, 447, 650, 701
PspPPI RGGWCCY 1 cut(s) 701
PsrI GAACNNNNNNTAC 2 cut(s) 1695, 1727
PstI CTGCAG 2 cut(s) 1677, 2131
PstNI CAGNNNCTG 6 cut(s) 581, 662, 743, 1037, 2135, 2846
PsuI RGATCY 5 cut(s) 740, 986, 1796, 1939, 3012
PvuII CAGCTG 4 cut(s) 1454, 2078, 2132, 2531
RsaI GTAC 6 cut(s) 775, 1603, 1998, 2294, 2678, 2981
RsaNI GTAC 6 cut(s) 774, 1602, 1997, 2293, 2677, 2980
SacI GAGCTC 2 cut(s) 1133, 3029
SapI GCTCTTC 5 cut(s) 1159, 1464, 1503, 2053, 2681
Sau96I GGNCC 5 cut(s) 96, 165, 447, 650, 701
ScaI AGTACT 2 cut(s) 775, 1603
SchI GAGTC 8 cut(s) 587, 608, 920, 1349, 1870, 2097, 2615, 2680
ScrFI CCNGG 8 cut(s) 163, 182, 358, 396, 933, 1928, 2108, 2859
SduI GDGCHC 5 cut(s) 796, 951, 1133, 1564, 3029
SfcI CTRYAG 5 cut(s) 413, 1673, 2127, 2420, 2532
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 2 cut(s) 96, 701
SmlI CTYRAG 6 cut(s) 672, 1533, 2198, 2322, 2548, 2563
SmoI CTYRAG 6 cut(s) 672, 1533, 2198, 2322, 2548, 2563
SseBI AGGCCT 1 cut(s) 2014
SsiI CCGC 8 cut(s) 58, 81, 698, 752, 1426, 1870, 2274, 2954
SstI GAGCTC 2 cut(s) 1133, 3029
StuI AGGCCT 1 cut(s) 2014
StyD4I CCNGG 8 cut(s) 161, 180, 356, 394, 931, 1926, 2106, 2857
StyI CCWWGG 4 cut(s) 223, 1749, 2578, 2769
TaaI ACNGT 7 cut(s) 430, 547, 568, 637, 1297, 2494, 2823
TaiI ACGT 3 cut(s) 1119, 1837, 1954
TaqI TCGA 7 cut(s) 201, 213, 231, 632, 807, 917, 2101
TatI WGTACW 3 cut(s) 773, 1601, 2979
TauI GCSGC 2 cut(s) 1873, 2276
TscAI CASTG 5 cut(s) 130, 615, 1330, 2828, 2913
TseFI GTSAC 1 cut(s) 1445
Tsp45I GTSAC 1 cut(s) 1445
TspGWI ACGGA 6 cut(s) 37, 943, 977, 2471, 2664, 3022
TspRI CASTG 5 cut(s) 130, 615, 1330, 2828, 2913
VpaK11BI GGWCC 2 cut(s) 96, 701
VspI ATTAAT 3 cut(s) 90, 1485, 2190
XapI RAATTY 3 cut(s) 208, 712, 820
XbaI TCTAGA 1 cut(s) 2183
XceI RCATGY 2 cut(s) 1921, 2755
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmaJI CCTAGG 1 cut(s) 2578
XmnI GAANNNNTTC 2 cut(s) 209, 2778
ZrmI AGTACT 2 cut(s) 775, 1603
Zsp2I ATGCAT 2 cut(s) 1147, 2401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.