Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004830

Physical Location & Seq

Genomic Coordinates Forward (+)

7503159 .. 7503935

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTGATAAGGAGGAAATTGAAGTTGTCAAGGAAGAAACAGATGATAAGCATGCTGCGACGGTGGAGGAAACAGAGACAGTGGTAGCAGAGCCTGAAAAATCTGAATCTGAATCATCTTCACTGCCAGTTGAGCCCTTTGAACCCACTGTTAAGAATGATGGCCCATCAGAATCTGTGGGTTCTCAAGATGACAACAAGATTTCAGTAGTGGGACCCTCAGTAAATCCAGAAACAATGCAGGGTAAGTCAAGAGCTGTTGAGGTAGATCAAGTTGAGGAGGGTCATACTGTTCTTCCGCGTGAGGCACATGATGTTGATGTGGATGAACAAAAGACACAAGTAGAGCAGAAGGATGGACATATGACTCAGGCTGGAGAGATTGTTGAAACAGTTGCTATGGTTGAAGCTGAGACTCCAACTGATAGCCAGCCTGGAGGTTTTCCTCTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMF_DNA_bd TMF_TATA_bd

Protein Analysis

152

Amino Acids

16.3

Weight (kDa)

4.14

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79830 AT1G79830 AT1G79830 AT1G79830 AT1G79830
fragaria_vesca	FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822
malus_domestica	MD09G1208900.v1.1 MD17G1190500.v1.1
prunus_persica	Prupe.2G059800_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.5G245900_v2.0.a1 Prupe.5G245900_v2.0.a1
pyrus_communis	pycom09g12520
rosa_chinensis	RchiOBHm_Chr2g0139071
rosa_laevigata	RLG00000019788
rosa_multiflora	Rmu_sc0006014.1_g000014
rosa_roxburghii	Rroxscaffold_2G00105700
rosa_rugosa	Rorug02G0354600
rosa_samantha	Rh2AG404600 Rh2BG414600 Rh2CG390900 Rh2DG424300
rosa_wichuraiana	Rw2G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	23, 143, 389, 407
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	257, 410
AluI	AGCT	2 cut(s)	257, 410
Alw26I	GTCTC	2 cut(s)	71, 407
AlwNI	CAGNNNCTG	2 cut(s)	95, 176
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	164, 215
AvaII	GGWCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	155, 175, 350
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	71, 407
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	164, 215
BmiI	GGNNCC	2 cut(s)	216, 217
BmrFI	CCNGG	1 cut(s)	435
BpmI	CTGGAG	2 cut(s)	396, 456
BpuEI	CTTGAG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	331, 361
BseMII	CTCAG	3 cut(s)	234, 383, 402
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	71, 407
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	233, 382, 403
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	216, 217
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	5 cut(s)	64, 82, 151, 292, 394
BstC8I	GCNNGC	2 cut(s)	54, 431
BstDEI	CTNAG	3 cut(s)	220, 369, 411
BstF5I	GGATG	2 cut(s)	331, 361
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	71, 407
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	433
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	331, 361
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	87, 122, 147
Cac8I	GCNNGC	2 cut(s)	54, 431
CaiI	CAGNNNCTG	2 cut(s)	95, 176
Cfr13I	GGNCC	2 cut(s)	164, 215
CviAII	CATG	2 cut(s)	53, 311
CviJI	RGCY	9 cut(s)	5, 94, 136, 165, 257, 374, 410, 429, 433
CviKI_1	RGCY	9 cut(s)	5, 94, 136, 165, 257, 374, 410, 429, 433
DdeI	CTNAG	3 cut(s)	220, 369, 411
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	2 cut(s)	56, 314
FaiI	YATR	6 cut(s)	54, 288, 312, 363, 365, 401
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	2 cut(s)	52, 310
FauNDI	CATATG	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	338, 368
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	396, 456
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	56, 314
HinfI	GANTC	5 cut(s)	107, 113, 173, 367, 415
Hpy188I	TCNGA	3 cut(s)	106, 112, 172
Hpy188III	TCNNGA	3 cut(s)	188, 230, 252
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	5 cut(s)	64, 82, 151, 292, 394
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	3 cut(s)	220, 369, 411
Hsp92II	CATG	2 cut(s)	56, 314
KflI	GGGWCCC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	108, 141, 227, 243, 356, 360, 420, 443, 447
Lsp1109I	GCAGC	1 cut(s)	43
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	47, 111, 287
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	361, 409
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	9 cut(s)	7, 61, 229, 256, 271, 274, 298, 431, 456
MseI	TTAA	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	56, 314
NlaIV	GGNNCC	2 cut(s)	216, 217
NspI	RCATGY	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	107, 113, 173
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	361, 409
PpsI	GAGTC	2 cut(s)	361, 409
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	216, 217
PspPI	GGNCC	2 cut(s)	164, 215
PspPPI	RGGWCCY	1 cut(s)	215
PstNI	CAGNNNCTG	2 cut(s)	95, 176
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	164, 215
SchI	GAGTC	2 cut(s)	361, 409
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	4 cut(s)	259, 267, 412, 442
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	5 cut(s)	64, 82, 151, 292, 394
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	107, 113, 173
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	3 cut(s)	87, 129, 154
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	3 cut(s)	87, 129, 154
VpaK11BI	GGWCC	1 cut(s)	215
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.