Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004830

Physical Location & Seq

Genomic Coordinates Reverse (-)

6435854 .. 6438728

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G118900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTGCTGGGAGAATTGTTTGCAATGCAGAGAAGACTTGTCTCTTACTTTTGTGATGATGAACTGGCTTCAGGATTATGGCCTTCGTCTACTGAAGGGAAATTGCTATTTGATCCTGTTATATCTTTTATGGGACAAACAAATGAGGGAAGTAGTGTTGATTCATCACAGAAAGCTGAGTCTTCAGAGCATCCGCCAAAGGTTGACAAATCATCAGGGGAATCTGAATCTCCACAAAAACTCTCTACTGTTGAGGCAAAGGAAGGGGTCAAAATAGAAACTTTACAACACTCTTCAACTGAACAGATGGCTGATAAGGAGGAAACTGAAGTTGTCAAGGAAGAAACAGATGATAAGCATGCTGCGACGGTGGAGGAAACAGAGACAGTGATAGCAGAGCCTGAAAAATCTGAATCTGAATCATCTTCACTGCCAGTTGAGCCCTTTGAACCCACTGTTAAGAATGATGGCCCATCAGAATCTGTGGGTTCTCAAGATGACAACAAGATTTCAGTAGTGGGACCCTCAGTAAATCCAGAAACAATGCAGGGTAAGTCAAGAGCTGTTGAGGTAGATCAAGTTGAGGAGGGTCATACTGTTCTCCGCGTGAGGCACATGATGTTGATGTGGATGAACAAAAGACACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMF_DNA_bd TMF_TATA_bd

Protein Analysis

217

Amino Acids

23.85

Weight (kDa)

4.61

Isoelectric Point (pI)

61.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79830 AT1G79830 AT1G79830 AT1G79830 AT1G79830
fragaria_vesca	FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822 FvH4_6g31822
malus_domestica	MD09G1208900.v1.1 MD17G1190500.v1.1
prunus_persica	Prupe.2G059800_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.3G066400_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.4G118900_v2.0.a1 Prupe.5G245900_v2.0.a1 Prupe.5G245900_v2.0.a1
pyrus_communis	pycom09g12520
rosa_chinensis	RchiOBHm_Chr2g0139071
rosa_laevigata	RLG00000019788
rosa_multiflora	Rmu_sc0006014.1_g000014
rosa_roxburghii	Rroxscaffold_2G00105700
rosa_rugosa	Rorug02G0354600
rosa_samantha	Rh2AG404600 Rh2BG414600 Rh2CG390900 Rh2DG424300
rosa_wichuraiana	Rw2G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	1 cut(s)	606
AciI	CCGC	2 cut(s)	194, 604
AclWI	GGATC	1 cut(s)	107
AcuI	CTGAAG	4 cut(s)	54, 114, 168, 348
AgsI	TTSAA	2 cut(s)	297, 449
AluBI	AGCT	2 cut(s)	176, 563
AluI	AGCT	2 cut(s)	176, 563
Alw26I	GTCTC	2 cut(s)	46, 377
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	2 cut(s)	401, 482
AoxI	GGCC	2 cut(s)	80, 469
ApeKI	GCWGC	2 cut(s)	4, 362
AspS9I	GGNCC	2 cut(s)	470, 521
AvaII	GGWCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	2 cut(s)	40, 174
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	301, 461, 481
BcoDI	GTCTC	2 cut(s)	46, 377
BisI	GCNGC	2 cut(s)	5, 363
BlsI	GCNGC	2 cut(s)	6, 364
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	470, 521
BmiI	GGNNCC	2 cut(s)	522, 523
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	40, 174
BpuEI	CTTGAG	1 cut(s)	477
Bse1I	ACTGG	2 cut(s)	69, 434
Bse3DI	GCAATG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	190, 636
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	168, 540
BseNI	ACTGG	2 cut(s)	69, 434
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	82, 471
BslFI	GGGAC	2 cut(s)	147, 534
BsmAI	GTCTC	2 cut(s)	46, 377
BsmFI	GGGAC	2 cut(s)	147, 534
BsnI	GGCC	2 cut(s)	82, 471
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	112, 574
BspACI	CCGC	2 cut(s)	194, 604
BspANI	GGCC	2 cut(s)	82, 471
BspCNI	CTCAG	2 cut(s)	169, 539
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	522, 523
BspPI	GGATC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	69, 434
BssMI	GATC	2 cut(s)	112, 574
Bst4CI	ACNGT	5 cut(s)	250, 370, 388, 457, 598
Bst6I	CTCTTC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	177, 526
BstF5I	GGATG	2 cut(s)	190, 636
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	2 cut(s)	115, 577
BstMAI	GTCTC	2 cut(s)	46, 377
BstMBI	GATC	2 cut(s)	112, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	362
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	40, 174
BsuRI	GGCC	2 cut(s)	82, 471
BtsCI	GGATG	2 cut(s)	190, 636
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	3 cut(s)	393, 428, 453
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	2 cut(s)	401, 482
Cfr13I	GGNCC	2 cut(s)	470, 521
CviAII	CATG	2 cut(s)	359, 616
CviJI	RGCY	8 cut(s)	68, 82, 176, 311, 400, 442, 471, 563
CviKI_1	RGCY	8 cut(s)	68, 82, 176, 311, 400, 442, 471, 563
DdeI	CTNAG	2 cut(s)	177, 526
DpnI	GATC	2 cut(s)	114, 576
DpnII	GATC	2 cut(s)	112, 574
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	4 cut(s)	54, 114, 168, 348
EcoO109I	RGGNCCY	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	2 cut(s)	362, 619
FaiI	YATR	6 cut(s)	79, 122, 131, 360, 594, 617
FaqI	GGGAC	2 cut(s)	147, 534
FatI	CATG	2 cut(s)	358, 615
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	5, 363
FokI	GGATG	2 cut(s)	177, 643
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	5, 363
GluI	GCNGC	2 cut(s)	5, 363
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	82, 471
Hin1II	CATG	2 cut(s)	362, 619
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	7 cut(s)	161, 179, 221, 227, 413, 419, 479
Hpy166II	GTNNAC	2 cut(s)	90, 205
Hpy188I	TCNGA	5 cut(s)	187, 226, 412, 418, 478
Hpy188III	TCNNGA	4 cut(s)	72, 494, 536, 558
Hpy8I	GTNNAC	2 cut(s)	90, 205
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	3 cut(s)	89, 93, 257
HpyCH4III	ACNGT	5 cut(s)	250, 370, 388, 457, 598
HpyCH4V	TGCA	3 cut(s)	23, 28, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	177, 526
Hsp92II	CATG	2 cut(s)	362, 619
KflI	GGGWCCC	1 cut(s)	521
Kzo9I	GATC	2 cut(s)	112, 574
LpnPI	CCDG	9 cut(s)	50, 57, 129, 201, 414, 447, 533, 549, 631
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	199
MalI	GATC	2 cut(s)	114, 576
MboI	GATC	2 cut(s)	112, 574
MboII	GAAGA	5 cut(s)	45, 174, 285, 353, 417
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	2 cut(s)	14, 101
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	9 cut(s)	139, 247, 313, 367, 535, 562, 577, 580, 603
MseI	TTAA	1 cut(s)	459
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeII	GATC	2 cut(s)	112, 574
NlaIII	CATG	2 cut(s)	362, 619
NlaIV	GGNNCC	2 cut(s)	522, 523
NspI	RCATGY	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	362
PfeI	GAWTC	6 cut(s)	161, 221, 227, 413, 419, 479
PkrI	GCNGC	2 cut(s)	6, 364
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	522, 523
PspPI	GGNCC	2 cut(s)	470, 521
PspPPI	RGGWCCY	1 cut(s)	521
PstNI	CAGNNNCTG	2 cut(s)	401, 482
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	5, 363
Sau3AI	GATC	2 cut(s)	112, 574
Sau96I	GGNCC	2 cut(s)	470, 521
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	5 cut(s)	178, 204, 565, 573, 650
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	2 cut(s)	14, 101
SsiI	CCGC	2 cut(s)	194, 604
TaaI	ACNGT	5 cut(s)	250, 370, 388, 457, 598
TasI	AATT	2 cut(s)	14, 101
TfiI	GAWTC	6 cut(s)	161, 221, 227, 413, 419, 479
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	3 cut(s)	393, 435, 460
TseI	GCWGC	2 cut(s)	4, 362
TspDTI	ATGAA	3 cut(s)	75, 153, 647
TspRI	CASTG	3 cut(s)	393, 435, 460
VpaK11BI	GGWCC	1 cut(s)	521
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.