Prupe.5G245900_v2.0.a1

Golgin candidate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0004830
Physical Location & Seq
Reverse (-)
18397254 .. 18400756
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G245900.1

Sequence Viewer

Length: 762 bp
ATGCTGCTGGGAGAATTGTTTGCAATGCAGAGAAGACTTGTCTCTTACTTTTGTGATGATGAACTGGCTTCAGGATTATGGCCTTCGTCTACTGAAGGGAAATTGCTATTTGATCCTGTTATATCTTTTATGGGACAAACAAATGAGGGAAGTAGTGTTGATTCATCACAGAAAGCTGAGTCTTCAGAGCATCTGCCAAAGGTTGACAAATCATCAGGGGAATCTGAATCTCCACAAAAACTCTCTACTGTTGAGGCAAAGGAAGGGGTCAAAACAGAAACTTTACAACACTCTTCAACTGAACAGATGGCTGATAAGGAGGAAACTGAAGTTGTCAAGGAAGAAACAGATGATAAGCATGCTGCGACGGTGGAGGAAACAGAGACAGTGGTAGCAGAGCCTGAAAAATCTGAATCTGAATCATCTTCACTGCCAGTTGAGCCCTTTGAACCCACTGTTAAGAATGATGGCCCATCAGAATCTGTGGGTTCTCAAGATGACAACAAGATTTCAGTAGTGGGACCCTCAGTAAATCCAGAAACAATGCAGGGTAAGTCAAGAGCTGTTGAGGTAGATCAAGTTGAGGAGGGTCATACTGTTCTTCCGCGTGAGGCACATGATGTTGATGTGGATGAACAAAAGACACAAGTAGAGCAGAAGGATGGACATATGACTCAGGCTGGAGAGATTGTTGAAACAGTTGCTATGGTTGAAGCTGAGACTCCAACTGATAGCCAGCCTGGAGGTTTTCCTCTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMF_DNA_bd TMF_TATA_bd

Protein Analysis

254

Amino Acids

27.41

Weight (kDa)

4.28

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AccII CGCG 1 cut(s) 607
AciI CCGC 1 cut(s) 605
AclWI GGATC 1 cut(s) 107
AcuI CTGAAG 4 cut(s) 54, 114, 168, 348
AgsI TTSAA 4 cut(s) 297, 449, 695, 713
AjnI CCWGG 1 cut(s) 739
AluBI AGCT 3 cut(s) 176, 563, 716
AluI AGCT 3 cut(s) 176, 563, 716
Alw26I GTCTC 3 cut(s) 46, 377, 713
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 2 cut(s) 401, 482
AoxI GGCC 2 cut(s) 80, 469
ApeKI GCWGC 2 cut(s) 4, 362
AspS9I GGNCC 2 cut(s) 470, 521
AvaII GGWCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 40, 174
BbvI GCAGC 1 cut(s) 349
BccI CCATC 4 cut(s) 301, 461, 481, 656
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 3 cut(s) 46, 377, 713
BisI GCNGC 2 cut(s) 5, 363
BlsI GCNGC 2 cut(s) 6, 364
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 470, 521
BmiI GGNNCC 2 cut(s) 522, 523
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 40, 174
BpmI CTGGAG 2 cut(s) 702, 762
BpuEI CTTGAG 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bse1I ACTGG 2 cut(s) 69, 434
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 741
BseGI GGATG 2 cut(s) 637, 667
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 4 cut(s) 168, 540, 689, 708
BseNI ACTGG 2 cut(s) 69, 434
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 349
BseYI CCCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 607
BshFI GGCC 2 cut(s) 82, 471
BslFI GGGAC 2 cut(s) 147, 534
BsmAI GTCTC 3 cut(s) 46, 377, 713
BsmFI GGGAC 2 cut(s) 147, 534
BsnI GGCC 2 cut(s) 82, 471
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 112, 574
BspACI CCGC 1 cut(s) 605
BspANI GGCC 2 cut(s) 82, 471
BspCNI CTCAG 4 cut(s) 169, 539, 688, 709
BspFNI CGCG 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 522, 523
BspPI GGATC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 2 cut(s) 69, 434
BssMI GATC 2 cut(s) 112, 574
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 6 cut(s) 250, 370, 388, 457, 598, 700
Bst6I CTCTTC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 360, 737
BstDEI CTNAG 4 cut(s) 177, 526, 675, 717
BstF5I GGATG 2 cut(s) 637, 667
BstFNI CGCG 1 cut(s) 607
BstKTI GATC 2 cut(s) 115, 577
BstMAI GTCTC 3 cut(s) 46, 377, 713
BstMBI GATC 2 cut(s) 112, 574
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 739
BstUI CGCG 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 2 cut(s) 40, 174
BsuRI GGCC 2 cut(s) 82, 471
BtsCI GGATG 2 cut(s) 637, 667
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 3 cut(s) 393, 428, 453
Cac8I GCNNGC 2 cut(s) 360, 737
CaiI CAGNNNCTG 2 cut(s) 401, 482
Cfr13I GGNCC 2 cut(s) 470, 521
CviAII CATG 2 cut(s) 359, 617
DdeI CTNAG 4 cut(s) 177, 526, 675, 717
DpnI GATC 2 cut(s) 114, 576
DpnII GATC 2 cut(s) 112, 574
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 4 cut(s) 54, 114, 168, 348
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 2 cut(s) 362, 620
FaiI YATR 9 cut(s) 79, 122, 131, 360, 594, 618, 669, 671, 707
FaqI GGGAC 2 cut(s) 147, 534
FatI CATG 2 cut(s) 358, 616
FauNDI CATATG 1 cut(s) 669
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 2 cut(s) 5, 363
FokI GGATG 2 cut(s) 644, 674
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 5, 363
GluI GCNGC 2 cut(s) 5, 363
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 2 cut(s) 702, 762
HaeIII GGCC 2 cut(s) 82, 471
Hin1II CATG 2 cut(s) 362, 620
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 9 cut(s) 161, 179, 221, 227, 413, 419, 479, 673, 721
Hpy166II GTNNAC 2 cut(s) 90, 205
Hpy188I TCNGA 5 cut(s) 187, 226, 412, 418, 478
Hpy188III TCNNGA 4 cut(s) 72, 494, 536, 558
Hpy8I GTNNAC 2 cut(s) 90, 205
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 4 cut(s) 89, 93, 257, 652
HpyCH4III ACNGT 6 cut(s) 250, 370, 388, 457, 598, 700
HpyCH4V TGCA 3 cut(s) 23, 28, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 4 cut(s) 177, 526, 675, 717
Hsp92II CATG 2 cut(s) 362, 620
KflI GGGWCCC 1 cut(s) 521
Kzo9I GATC 2 cut(s) 112, 574
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 199
MalI GATC 2 cut(s) 114, 576
MboI GATC 2 cut(s) 112, 574
MboII GAAGA 6 cut(s) 45, 174, 285, 353, 417, 593
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 2 cut(s) 14, 101
MlyI GAGTC 3 cut(s) 188, 667, 715
MmeI TCCRAC 1 cut(s) 749
MseI TTAA 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 1 cut(s) 607
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeI CATATG 1 cut(s) 669
NdeII GATC 2 cut(s) 112, 574
NlaIII CATG 2 cut(s) 362, 620
NlaIV GGNNCC 2 cut(s) 522, 523
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PfeI GAWTC 6 cut(s) 161, 221, 227, 413, 419, 479
PkrI GCNGC 2 cut(s) 6, 364
PleI GAGTC 3 cut(s) 187, 667, 715
PpsI GAGTC 3 cut(s) 187, 667, 715
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 2 cut(s) 522, 523
PspPI GGNCC 2 cut(s) 470, 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 2 cut(s) 401, 482
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 5, 363
Sau3AI GATC 2 cut(s) 112, 574
Sau96I GGNCC 2 cut(s) 470, 521
SchI GAGTC 3 cut(s) 188, 667, 715
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 1 cut(s) 444
SetI ASST 6 cut(s) 178, 204, 565, 573, 718, 748
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
SphI GCATGC 1 cut(s) 362
Sse9I AATT 2 cut(s) 14, 101
SsiI CCGC 1 cut(s) 605
StyD4I CCNGG 1 cut(s) 739
TaaI ACNGT 6 cut(s) 250, 370, 388, 457, 598, 700
TasI AATT 2 cut(s) 14, 101
TfiI GAWTC 6 cut(s) 161, 221, 227, 413, 419, 479
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 3 cut(s) 393, 435, 460
TseI GCWGC 2 cut(s) 4, 362
TspDTI ATGAA 3 cut(s) 75, 153, 648
TspRI CASTG 3 cut(s) 393, 435, 460
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.