AT1G80130
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013935
Physical Location & Seq
Reverse (-)
30140912 .. 30142697
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80130.1

Sequence Viewer

Length: 918 bp
ATGTTATTGAGAAGCACATCTGCTCCGATACTGAACTCGTGGCTTCCACAACACTGCTCGAGAGAATCGTCTCCGGAACCGGAGTCACAGCTCTGGCGCCGGTCAACATCATTGTCTCTTTTCTCATCAAAGTCCATAGATGGACACACTGGGGAGCAGCTGCACCAAGCTCTCTCTGACAACAAGGAGATTATTATTCTTAAATCAAAAAGCAACGAGCACAGCTACAAAACTCCAACATCAAGCAGGCAACGCAGGTCATCTTTAGATGAAACACGCTACACAAAAAAGACTTTGGATCGGTCATCACCTTTCTTAGTGGAGAGGCTCTTCTCGAGCTCTGGACAGGGAGATAAGGCCAGTAGTAATGATCGTCTGGAGACTCTTGTGAGTGGTGGTGGTGGCGGGATGGGAGGCAGCGGCGGCAATATTTGTAACGGCGGCGGTGGTGTCGGTGGAAGTGGTGTGGACGGCGGTAGGAGTGAGGACGCTACCGACACGTATTACCGGGAGATGATCGACTCGAATCCAGGAAACTCGCTTTTGACCGGAAACTACGCCAAGTTCTTGAAAGAGGTGAAAGGAGACATGAAAAAAGCAGAAGAGTATTGTGAAAGAGCAATTTTGGGGAACACCAACGATGGAAACGTTCTATCTCTCTATGCTGATCTCATTTTGCACAACCATCAAGATCGTCAAAGAGCCCACTCTTACTATAAGCAAGCCGTCAAGATGTCCCCGGAAGATTGTTATGTGCAAGCTTCATACGCAAGGTTTCTGTGGGATGTGGATGAGGACGAAGAAGATGAAGCATTAGGAGAAGAAGAAGAGAACTTGAGTGATGAAACTGGCCATGTGCCTCCAACTACCATGTTCCGTGATTTTCCCCAACACACTTCTATTACCGCATCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

305

Amino Acids

33.59

Weight (kDa)

5.19

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 96
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 7 cut(s) 405, 420, 423, 441, 444, 474, 906
AclI AACGTT 1 cut(s) 648
AclWI GGATC 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 850
AcyI GRCGYC 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 1 cut(s) 571
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 6 cut(s) 91, 160, 170, 225, 339, 761
AluI AGCT 6 cut(s) 91, 160, 170, 225, 339, 761
Alw21I GWGCWC 2 cut(s) 222, 341
Alw26I GTCTC 4 cut(s) 75, 120, 374, 579
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 2 cut(s) 58, 334
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 357, 850
ApeKI GCWGC 3 cut(s) 157, 160, 417
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 2 cut(s) 509, 740
AsuHPI GGTGA 2 cut(s) 300, 589
AvaI CYCGRG 2 cut(s) 58, 334
BalI TGGCCA 1 cut(s) 852
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 2 cut(s) 341, 706
BauI CACGAG 1 cut(s) 37
Bbv12I GWGCWC 2 cut(s) 222, 341
BbvI GCAGC 3 cut(s) 147, 169, 429
BccI CCATC 4 cut(s) 134, 403, 635, 693
BceAI ACGGC 3 cut(s) 454, 487, 710
BciT130I CCWGG 1 cut(s) 531
BcnI CCSGG 2 cut(s) 509, 740
BcoDI GTCTC 4 cut(s) 75, 120, 374, 579
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 246
BisI GCNGC 6 cut(s) 158, 161, 418, 421, 424, 442
BlsI GCNGC 6 cut(s) 159, 162, 419, 422, 425, 443
Bme1390I CCNGG 3 cut(s) 509, 531, 740
BmeT110I CYCGRG 2 cut(s) 58, 334
BmiI GGNNCC 2 cut(s) 78, 98
BmrFI CCNGG 3 cut(s) 509, 531, 740
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 856
BpuMI CCSGG 2 cut(s) 509, 740
BsaAI YACGTR 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 738
BsaWI WCCGGW 3 cut(s) 73, 79, 548
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 3 cut(s) 154, 360, 853
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 4 cut(s) 414, 790, 796, 911
BseNI ACTGG 3 cut(s) 154, 360, 853
BseXI GCAGC 3 cut(s) 147, 169, 429
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 2 cut(s) 359, 852
BshNI GGYRCC 1 cut(s) 96
BsiHKAI GWGCWC 2 cut(s) 222, 341
BsiHKCI CYCGRG 2 cut(s) 58, 334
BsiSI CCGG 6 cut(s) 74, 80, 100, 508, 549, 740
BslFI GGGAC 1 cut(s) 721
BsmAI GTCTC 4 cut(s) 75, 120, 374, 579
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 2 cut(s) 359, 852
BsoBI CYCGRG 2 cut(s) 58, 334
Bsp1286I GDGCHC 3 cut(s) 222, 341, 706
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 5 cut(s) 298, 370, 516, 667, 691
BspACI CCGC 7 cut(s) 405, 420, 423, 441, 444, 474, 906
BspANI GGCC 2 cut(s) 359, 852
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 78, 98
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 306
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 3 cut(s) 154, 360, 853
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 5 cut(s) 298, 370, 516, 667, 691
BssNI GRCGYC 1 cut(s) 97
BssSI CACGAG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 531
Bst6I CTCTTC 3 cut(s) 335, 597, 822
BstACI GRCGYC 1 cut(s) 97
BstBAI YACGTR 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 248, 723, 759
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 4 cut(s) 414, 790, 796, 911
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 5 cut(s) 301, 373, 519, 670, 694
BstMAI GTCTC 4 cut(s) 75, 120, 374, 579
BstMBI GATC 5 cut(s) 298, 370, 516, 667, 691
BstMWI GCNNNNNNNGC 3 cut(s) 252, 423, 767
BstNI CCWGG 1 cut(s) 531
BstSCI CCNGG 3 cut(s) 507, 529, 738
BstV1I GCAGC 3 cut(s) 147, 169, 429
BsuRI GGCC 2 cut(s) 359, 852
BtsCI GGATG 4 cut(s) 414, 790, 796, 911
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 52, 147
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 248, 723, 759
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 99
CseI GACGC 1 cut(s) 497
CviAII CATG 3 cut(s) 589, 854, 871
DdeI CTNAG 1 cut(s) 316
DinI GGCGCC 1 cut(s) 98
DpnI GATC 5 cut(s) 300, 372, 518, 669, 693
DpnII GATC 5 cut(s) 298, 370, 516, 667, 691
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 3 cut(s) 335, 597, 822
EarI CTCTTC 3 cut(s) 335, 597, 822
Ecl136II GAGCTC 1 cut(s) 339
Eco24I GRGCYC 2 cut(s) 341, 706
Eco53kI GAGCTC 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 58, 334
EcoICRI GAGCTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 341, 706
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 3 cut(s) 592, 857, 874
FaiI YATR 8 cut(s) 137, 590, 663, 717, 753, 766, 855, 872
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 588, 853, 870
FauI CCCGC 1 cut(s) 398
Fnu4HI GCNGC 6 cut(s) 158, 161, 418, 421, 424, 442
FokI GGATG 4 cut(s) 421, 797, 803, 898
FriOI GRGCYC 2 cut(s) 341, 706
Fsp4HI GCNGC 6 cut(s) 158, 161, 418, 421, 424, 442
GlaI GCGC 1 cut(s) 98
GluI GCNGC 6 cut(s) 158, 161, 418, 421, 424, 442
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 2 cut(s) 359, 852
HapII CCGG 6 cut(s) 74, 80, 100, 508, 549, 740
HgaI GACGC 1 cut(s) 497
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 3 cut(s) 592, 857, 874
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 5 cut(s) 65, 83, 382, 521, 526
HpaII CCGG 6 cut(s) 74, 80, 100, 508, 549, 740
HphI GGTGA 2 cut(s) 300, 589
Hpy166II GTNNAC 2 cut(s) 105, 469
Hpy188I TCNGA 2 cut(s) 27, 178
Hpy188III TCNNGA 8 cut(s) 60, 74, 334, 342, 377, 568, 689, 730
Hpy8I GTNNAC 2 cut(s) 105, 469
HpyCH4IV ACGT 2 cut(s) 500, 648
HpyCH4V TGCA 3 cut(s) 163, 679, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 423, 767
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 2 cut(s) 500, 648
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 592, 857, 874
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 298, 370, 516, 667, 691
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 28, 154
Lsp1109I GCAGC 3 cut(s) 147, 169, 429
MaeII ACGT 2 cut(s) 500, 648
MaeIII GTNAC 2 cut(s) 84, 434
MalI GATC 5 cut(s) 300, 372, 518, 669, 693
MboI GATC 5 cut(s) 298, 370, 516, 667, 691
MboII GAAGA 8 cut(s) 322, 614, 755, 812, 815, 833, 836, 839
MhlI GDGCHC 3 cut(s) 222, 341, 706
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 1 cut(s) 621
MluNI TGGCCA 1 cut(s) 852
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 3 cut(s) 92, 376, 515
MmeI TCCRAC 2 cut(s) 260, 887
MnlI CCTC 6 cut(s) 318, 407, 478, 568, 787, 870
Mox20I TGGCCA 1 cut(s) 852
MroI TCCGGA 1 cut(s) 73
MscI TGGCCA 1 cut(s) 852
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 852
MspA1I CMGCKG 2 cut(s) 160, 420
MspI CCGG 6 cut(s) 74, 80, 100, 508, 549, 740
MspR9I CCNGG 3 cut(s) 509, 531, 740
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 3 cut(s) 252, 423, 767
NarI GGCGCC 1 cut(s) 97
NciI CCSGG 2 cut(s) 509, 740
NdeII GATC 5 cut(s) 298, 370, 516, 667, 691
NlaIII CATG 3 cut(s) 592, 857, 874
NlaIV GGNNCC 2 cut(s) 78, 98
NmuCI GTSAC 1 cut(s) 84
PaeR7I CTCGAG 2 cut(s) 58, 334
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 645
PfeI GAWTC 2 cut(s) 65, 526
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 6 cut(s) 159, 162, 419, 422, 425, 443
PleI GAGTC 3 cut(s) 91, 376, 515
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 3 cut(s) 91, 376, 515
Ppu21I YACGTR 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 78, 98
PvuII CAGCTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 6 cut(s) 158, 161, 418, 421, 424, 442
Sau3AI GATC 5 cut(s) 298, 370, 516, 667, 691
SchI GAGTC 3 cut(s) 92, 376, 515
ScrFI CCNGG 3 cut(s) 509, 531, 740
SduI GDGCHC 3 cut(s) 222, 341, 706
SfoI GGCGCC 1 cut(s) 98
Sfr274I CTCGAG 2 cut(s) 58, 334
SlaI CTCGAG 2 cut(s) 58, 334
SmlI CTYRAG 3 cut(s) 58, 334, 835
SmoI CTYRAG 3 cut(s) 58, 334, 835
Sse9I AATT 1 cut(s) 621
SsiI CCGC 7 cut(s) 405, 420, 423, 441, 444, 474, 906
SspDI GGCGCC 1 cut(s) 96
SspI AATATT 1 cut(s) 430
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 507, 529, 738
TaiI ACGT 2 cut(s) 503, 651
TaqI TCGA 4 cut(s) 59, 335, 519, 524
TaqII GACCGA 1 cut(s) 291
TasI AATT 1 cut(s) 621
TauI GCSGC 3 cut(s) 423, 426, 444
TfiI GAWTC 2 cut(s) 65, 526
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 59, 154
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 3 cut(s) 157, 160, 417
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 5 cut(s) 285, 605, 753, 822, 858
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 2 cut(s) 59, 154
XhoI CTCGAG 2 cut(s) 58, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.