Rmu_co8281553.1_g000001
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8281553.1
OG0013935
Physical Location & Seq
Reverse (-)
2 .. 609
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8281553.1_g000001.1.cds

Sequence Viewer

Length: 608 bp
atgcttctaaggagctcttcaacaccaatcttgaactcatggctctcccactccaaagacccccaactagagccagagccagttctcaatcttcctcgaaccaagtcagtcaacttatcatcttctctccacaccctcaccttggacccaacaaagaaagcaacccaattcctagtcgaatcagaccaacaaacctcgccagttaagccccaaaagaaaacccccatacctcaaatcaagagaaagcaatctaaaaacagagccaaagaaggtatggaacaagaagaggaactagaacccattaccatatcatcatcatcatcttcttcaacccaaaggctgttttcaagctctggattgggtgagaaactggtggatgatgaagcttgcggtgcagggaagaaagagtgtgcgctgcagacactgacgttgggtggtggtgtgggaaacaatggcggtaagatctgtggtggtggtggagggaggaaaggatctgacggtggagatgagtctggcttctctgagaggaacgataaccatgagattaataatactgatgcttattaccagaaaatgattcaagcagaccccagcaatccactcttact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

203

Amino Acids

21.8

Weight (kDa)

6.33

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 390, 456
AclWI GGATC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 5 cut(s) 21, 34, 330, 348, 581
AluBI AGCT 3 cut(s) 15, 351, 386
AluI AGCT 3 cut(s) 15, 351, 386
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 499
AlwNI CAGNNNCTG 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 415
AseI ATTAAT 1 cut(s) 546
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 130, 374
AvaII GGWCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 402
BfaI CTAG 3 cut(s) 68, 173, 293
BfmI CTRYAG 1 cut(s) 416
BglII AGATCT 1 cut(s) 462
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 80, 200, 375
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 3 cut(s) 80, 200, 375
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 590
BsgI GTGCAG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 462, 491
BspACI CCGC 2 cut(s) 390, 456
BspCNI CTCAG 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 1 cut(s) 499
BspQI GCTCTTC 1 cut(s) 22
BsrI ACTGG 3 cut(s) 80, 200, 375
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 462, 491
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 2 cut(s) 22, 279
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 2 cut(s) 8, 522
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 465, 494
BstMBI GATC 2 cut(s) 462, 491
BstMWI GCNNNNNNNGC 2 cut(s) 205, 392
BstSFI CTRYAG 1 cut(s) 416
BstV1I GCAGC 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 462, 491
BstYI RGATCY 2 cut(s) 462, 491
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 388
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 2 cut(s) 39, 539
DdeI CTNAG 2 cut(s) 8, 522
DpnI GATC 2 cut(s) 464, 493
DpnII GATC 2 cut(s) 462, 491
Eam1104I CTCTTC 2 cut(s) 22, 279
EarI CTCTTC 2 cut(s) 22, 279
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 42, 542
FaiI YATR 5 cut(s) 40, 227, 275, 308, 540
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 2 cut(s) 38, 538
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 3 cut(s) 68, 173, 293
GlaI GCGC 1 cut(s) 414
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 594
HhaI GCGC 1 cut(s) 415
Hin1II CATG 2 cut(s) 42, 542
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 3 cut(s) 179, 509, 577
HphI GGTGA 2 cut(s) 130, 374
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 184, 496, 523
Hpy188III TCNNGA 3 cut(s) 31, 238, 354
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 395, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 392
HpyF3I CTNAG 2 cut(s) 8, 522
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 2 cut(s) 42, 542
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 462, 491
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 9 cut(s) 87, 93, 213, 339, 356, 381, 498, 581, 604
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 547
MaeI CTAG 3 cut(s) 68, 173, 293
MaeII ACGT 1 cut(s) 428
MalI GATC 2 cut(s) 464, 493
MboI GATC 2 cut(s) 462, 491
MboII GAAGA 7 cut(s) 9, 83, 114, 296, 315, 318, 412
MflI RGATCY 2 cut(s) 462, 491
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 8 cut(s) 105, 146, 205, 240, 280, 473, 477, 519
MseI TTAA 2 cut(s) 204, 546
MwoI GCNNNNNNNGC 2 cut(s) 205, 392
NdeII GATC 2 cut(s) 462, 491
NlaIII CATG 2 cut(s) 42, 542
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 179, 577
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 2 cut(s) 462, 491
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 204, 546
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 2 cut(s) 462, 491
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 518
SduI GDGCHC 1 cut(s) 17
SetI ASST 8 cut(s) 17, 143, 197, 232, 274, 353, 388, 431
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 416
SinI GGWCC 1 cut(s) 145
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 390, 456
SspMI CTAG 3 cut(s) 68, 173, 293
SstI GAGCTC 1 cut(s) 17
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 500
TaiI ACGT 1 cut(s) 431
TaqI TCGA 2 cut(s) 97, 177
TasI AATT 1 cut(s) 167
TfiI GAWTC 2 cut(s) 179, 577
Tru1I TTAA 2 cut(s) 204, 546
Tru9I TTAA 2 cut(s) 204, 546
TscAI CASTG 1 cut(s) 429
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 3 cut(s) 68, 173, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.