Rmu_sc0007848.1_g000039
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007848.1
OG0013935
Physical Location & Seq
Forward (+)
155233 .. 157124
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007848.1_g000039.1.cds

Sequence Viewer

Length: 387 bp
atgcaaattatacattatgcattaggagaggaagggatgagctgggaggtccgaggagaccatgataaagcggaggagtactgtgagagagcaattttggctaatccgaatgatggcgatgttttatcaacatatgctgctctcatatggaacacacagaaggatgctcaacgagctgagaattattttgatcaagctgttaaagcttccccagatgatagttatgtcctggcttcgtatgctcgattcctgtgggatgctgaagaagatgaagaagaagatgaaggaaatgaaaggcttcaacatggaactgatcaaagccacacatcttcatccaatttctaccacggagctcatcagcaatctcctataactgcagcttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

128

Amino Acids

14.46

Weight (kDa)

4.34

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 6 cut(s) 42, 176, 197, 206, 353, 380
AluI AGCT 6 cut(s) 42, 176, 197, 206, 353, 380
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 137, 377
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 2 cut(s) 190, 313
BcoDI GTCTC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 2 cut(s) 138, 378
BlsI GCNGC 2 cut(s) 139, 379
BmcAI AGTACT 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 154, 247
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 52, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 52, 346
BseGI GGATG 4 cut(s) 42, 169, 262, 332
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 69, 89
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 190, 313
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 52, 346
BssMI GATC 2 cut(s) 190, 313
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 4 cut(s) 42, 169, 262, 332
BstKTI GATC 2 cut(s) 193, 316
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 2 cut(s) 190, 313
BstMWI GCNNNNNNNGC 4 cut(s) 98, 173, 203, 239
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 4 cut(s) 42, 169, 262, 332
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 62, 305
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 192, 315
DpnII GATC 2 cut(s) 190, 313
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 355
FaeI CATG 2 cut(s) 65, 308
FatI CATG 2 cut(s) 61, 304
FauNDI CATATG 2 cut(s) 133, 146
FbaI TGATCA 2 cut(s) 190, 313
Fnu4HI GCNGC 2 cut(s) 138, 378
FokI GGATG 4 cut(s) 49, 176, 269, 319
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 138, 378
GluI GCNGC 2 cut(s) 138, 378
GsaI CCCAGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 65, 308
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 53, 108
HpyAV CCTTC 3 cut(s) 26, 154, 278
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 4, 20, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 173, 203, 239
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 65, 308
Ksp22I TGATCA 2 cut(s) 190, 313
Kzo9I GATC 2 cut(s) 190, 313
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 28, 215, 225, 242, 263
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 154, 247
MalI GATC 2 cut(s) 192, 315
MboI GATC 2 cut(s) 190, 313
MboII GAAGA 6 cut(s) 275, 278, 284, 287, 290, 321
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 4 cut(s) 6, 93, 181, 337
MnlI CCTC 4 cut(s) 22, 40, 47, 67
Mph1103I ATGCAT 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 201, 385
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 4 cut(s) 98, 173, 203, 239
NdeI CATATG 2 cut(s) 133, 146
NdeII GATC 2 cut(s) 190, 313
NlaIII CATG 2 cut(s) 65, 308
NsiI ATGCAT 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 2 cut(s) 139, 379
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 379
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 201, 385
SatI GCNGC 2 cut(s) 138, 378
Sau3AI GATC 2 cut(s) 190, 313
Sau96I GGNCC 1 cut(s) 49
ScaI AGTACT 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 355
SetI ASST 7 cut(s) 44, 51, 178, 199, 208, 355, 382
SfaNI GCATC 2 cut(s) 154, 247
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 49
Sse9I AATT 4 cut(s) 6, 93, 181, 337
SsiI CCGC 1 cut(s) 71
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 244
TasI AATT 4 cut(s) 6, 93, 181, 337
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 2 cut(s) 201, 385
Tru9I TTAA 2 cut(s) 201, 385
TseI GCWGC 2 cut(s) 137, 377
TspDTI ATGAA 4 cut(s) 285, 297, 306, 321
TspGWI ACGGA 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.