RchiOBHm_Chr2g0135711
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013935
Physical Location & Seq
Reverse (-)
52924087 .. 52926191
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50657

Sequence Viewer

Length: 978 bp
ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCCCACTCCAAAGACCCCCAACTAGAGCCAGAGCCAGTTCTCAATCTTCCTCGAACCAAGTCAGTCAACTTATCATCTTCTCTCCACACCCTCACCTTGGACCCAACAAAGAAAGCAACCCAATTCCTAGTCGAATCAGACCAACAAACCTCGCCAGTTAAGCCCCAAAAGAAAACCCCCATACCTCAAATCAAGAGAAAGCAATCTAAAAACAGAGCCAAAGAAGGTATGGAACAAGAAGAGGAACTAGAACCCATTACCATATCATCATCATCATCATCTTCTTCAACCCAAAGGCTGTTTTCAAGCTCTGGATTGGGTGAGAAACTGGTGGATGATGAAGCTTGCGGTGCAGGGAAGAAAGAGTGTGCGCTGCAGACACTGACGTTGGGTGGTGGTGTGGGAAACAATGGCGGTAAGATCTGTGGTGGTGGTGGAGGGAGGAAAGGATCTGACGGTGGAGATGAGTCTGGCTTCTCTGAGAGGAACGATAACCATGAGATTAATAATACTGATGCTTATTACCAGAAAATGATTCAAGCAGACCCCAGCAATCCACTCTTACTTAGCAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGACCATGATAAAGCGGAGGAGTACTGTGAGAGAGCAATTTTGGCTAATCCGAATGATGGCGATGTTTTATCAACATATGCTGCTCTCATATGGAACACACAGAAGGATGCTCAACGAGCTGAGAATTATTTTGATCAAGCTGTTAAAGCTTCCCCAGATGATAGTTATGTCCTGGCTTCGTATGCTCGATTCCTGTGGGATGCTGAAGAAGATGAAGAAGAAGATGAAGGAAATGAAAGGCTTCAACATGGAACTGATCAAAGCCACACATCTTCATCCAATTTCTACCACGGAGCTCATCAGCAATCTCCTATAACTGCAGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

325

Amino Acids

35.53

Weight (kDa)

5.03

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 181 - 229 1.1e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 393, 459, 662
AclWI GGATC 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 2 cut(s) 142, 704
AgsI TTSAA 6 cut(s) 21, 34, 333, 351, 584, 893
AjnI CCWGG 1 cut(s) 819
AluBI AGCT 8 cut(s) 15, 354, 389, 767, 788, 797, 944, 971
AluI AGCT 8 cut(s) 15, 354, 389, 767, 788, 797, 944, 971
Alw21I GWGCWC 2 cut(s) 17, 946
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 418, 728, 968
AseI ATTAAT 1 cut(s) 549
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 145, 640
AsuHPI GGTGA 2 cut(s) 130, 377
AvaII GGWCC 2 cut(s) 145, 640
BanII GRGCYC 2 cut(s) 17, 946
Bbv12I GWGCWC 2 cut(s) 17, 946
BbvI GCAGC 2 cut(s) 405, 715
BccI CCATC 1 cut(s) 698
BciT130I CCWGG 1 cut(s) 821
BclI TGATCA 2 cut(s) 781, 904
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 3 cut(s) 68, 173, 293
BfmI CTRYAG 2 cut(s) 419, 966
BglII AGATCT 1 cut(s) 465
BisI GCNGC 3 cut(s) 419, 729, 969
BlsI GCNGC 3 cut(s) 420, 730, 970
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 1 cut(s) 821
Bme18I GGWCC 2 cut(s) 145, 640
BmgT120I GGNCC 2 cut(s) 145, 640
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 821
BmsI GCATC 3 cut(s) 550, 745, 838
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 141, 643, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 704
Bse1I ACTGG 3 cut(s) 80, 200, 378
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 3 cut(s) 141, 643, 937
BseGI GGATG 4 cut(s) 385, 760, 853, 923
BseLI CCNNNNNNNGG 2 cut(s) 142, 704
BseMII CTCAG 2 cut(s) 516, 759
BseNI ACTGG 3 cut(s) 80, 200, 378
BseRI GAGGAG 2 cut(s) 660, 680
BseXI GCAGC 2 cut(s) 405, 715
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 17, 946
BslI CCNNNNNNNGG 2 cut(s) 142, 704
BsmAI GTCTC 1 cut(s) 642
Bso31I GGTCTC 1 cut(s) 642
Bsp1286I GDGCHC 2 cut(s) 17, 946
Bsp143I GATC 4 cut(s) 465, 494, 781, 904
BspACI CCGC 3 cut(s) 393, 459, 662
BspCNI CTCAG 2 cut(s) 517, 760
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 2 cut(s) 423, 970
BspPI GGATC 1 cut(s) 502
BspQI GCTCTTC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 642
BsrI ACTGG 3 cut(s) 80, 200, 378
BssECI CCNNGG 3 cut(s) 141, 643, 937
BssMI GATC 4 cut(s) 465, 494, 781, 904
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 2 cut(s) 503, 674
Bst6I CTCTTC 2 cut(s) 22, 279
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 4 cut(s) 8, 525, 611, 768
BstDSI CCRYGG 1 cut(s) 937
BstF5I GGATG 4 cut(s) 385, 760, 853, 923
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 4 cut(s) 468, 497, 784, 907
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 4 cut(s) 465, 494, 781, 904
BstMWI GCNNNNNNNGC 6 cut(s) 205, 395, 689, 764, 794, 830
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 819
BstSFI CTRYAG 2 cut(s) 419, 966
BstV1I GCAGC 2 cut(s) 405, 715
BstX2I RGATCY 2 cut(s) 465, 494
BstYI RGATCY 2 cut(s) 465, 494
BtgI CCRYGG 1 cut(s) 937
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 4 cut(s) 385, 760, 853, 923
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 427
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 145, 640
Csp6I GTAC 1 cut(s) 670
CviAII CATG 4 cut(s) 39, 542, 653, 896
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 4 cut(s) 8, 525, 611, 768
DpnI GATC 4 cut(s) 467, 496, 783, 906
DpnII GATC 4 cut(s) 465, 494, 781, 904
Eam1104I CTCTTC 2 cut(s) 22, 279
EarI CTCTTC 2 cut(s) 22, 279
Ecl136II GAGCTC 2 cut(s) 15, 944
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 17, 946
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 145, 640
Eco53kI GAGCTC 2 cut(s) 15, 944
Eco57I CTGAAG 1 cut(s) 873
EcoICRI GAGCTC 2 cut(s) 15, 944
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 17, 946
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 4 cut(s) 42, 545, 656, 899
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 4 cut(s) 38, 541, 652, 895
FauNDI CATATG 2 cut(s) 724, 737
FbaI TGATCA 2 cut(s) 781, 904
Fnu4HI GCNGC 3 cut(s) 419, 729, 969
FokI GGATG 4 cut(s) 392, 767, 860, 910
FriOI GRGCYC 2 cut(s) 17, 946
Fsp4HI GCNGC 3 cut(s) 419, 729, 969
FspBI CTAG 3 cut(s) 68, 173, 293
GlaI GCGC 1 cut(s) 417
GluI GCNGC 3 cut(s) 419, 729, 969
GsaI CCCAGC 1 cut(s) 597
HhaI GCGC 1 cut(s) 418
Hin1II CATG 4 cut(s) 42, 545, 656, 899
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 387, 795
HinfI GANTC 4 cut(s) 179, 512, 580, 837
HphI GGTGA 2 cut(s) 130, 377
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 184, 499, 526, 644, 699
Hpy188III TCNNGA 3 cut(s) 31, 238, 357
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 263, 745, 869
HpyCH4III ACNGT 2 cut(s) 503, 674
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 4 cut(s) 398, 421, 623, 968
HpyF10VI GCNNNNNNNGC 6 cut(s) 205, 395, 689, 764, 794, 830
HpyF3I CTNAG 4 cut(s) 8, 525, 611, 768
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 4 cut(s) 42, 545, 656, 899
HspAI GCGC 1 cut(s) 416
Ksp22I TGATCA 2 cut(s) 781, 904
Kzo9I GATC 4 cut(s) 465, 494, 781, 904
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 12, 941
Lsp1109I GCAGC 2 cut(s) 405, 715
LweI GCATC 3 cut(s) 550, 745, 838
MaeI CTAG 3 cut(s) 68, 173, 293
MaeII ACGT 1 cut(s) 431
MalI GATC 4 cut(s) 467, 496, 783, 906
MboI GATC 4 cut(s) 465, 494, 781, 904
MflI RGATCY 2 cut(s) 465, 494
MhlI GDGCHC 2 cut(s) 17, 946
MluCI AATT 4 cut(s) 167, 684, 772, 928
MlyI GAGTC 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 4 cut(s) 204, 549, 792, 976
MspR9I CCNGG 1 cut(s) 821
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 6 cut(s) 205, 395, 689, 764, 794, 830
NdeI CATATG 2 cut(s) 724, 737
NdeII GATC 4 cut(s) 465, 494, 781, 904
NlaIII CATG 4 cut(s) 42, 545, 656, 899
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 3 cut(s) 179, 580, 837
PkrI GCNGC 3 cut(s) 420, 730, 970
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 549
Psp124BI GAGCTC 2 cut(s) 17, 946
Psp6I CCWGG 1 cut(s) 819
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 145, 640
PstI CTGCAG 2 cut(s) 423, 970
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 465, 494
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
SacI GAGCTC 2 cut(s) 17, 946
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 4 cut(s) 204, 549, 792, 976
SatI GCNGC 3 cut(s) 419, 729, 969
Sau3AI GATC 4 cut(s) 465, 494, 781, 904
Sau96I GGNCC 2 cut(s) 145, 640
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 2 cut(s) 17, 946
SfaNI GCATC 3 cut(s) 550, 745, 838
SfcI CTRYAG 2 cut(s) 419, 966
SinI GGWCC 2 cut(s) 145, 640
Sse9I AATT 4 cut(s) 167, 684, 772, 928
SsiI CCGC 3 cut(s) 393, 459, 662
SspMI CTAG 3 cut(s) 68, 173, 293
SstI GAGCTC 2 cut(s) 17, 946
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 503, 674
TaiI ACGT 1 cut(s) 434
TaqI TCGA 3 cut(s) 97, 177, 835
TasI AATT 4 cut(s) 167, 684, 772, 928
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 3 cut(s) 179, 580, 837
Tru1I TTAA 4 cut(s) 204, 549, 792, 976
Tru9I TTAA 4 cut(s) 204, 549, 792, 976
TscAI CASTG 1 cut(s) 432
TseI GCWGC 3 cut(s) 418, 728, 968
TspDTI ATGAA 5 cut(s) 399, 876, 888, 897, 912
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 145, 640
VspI ATTAAT 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 3 cut(s) 68, 173, 293
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.