Rh2BG383900
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013935
Physical Location & Seq
Reverse (-)
54411087 .. 54413892
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG383900.1

Sequence Viewer

Length: 816 bp
ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCCCACTCCAAAGACCCCCAACTAGAGCCAGAGCCAGTTCTCAATCTTCCTCGAACCAAGTCAGTCAACTTATCATCTTCTCTCCACACCCTCACCTTGGACCCAACAAAGAAAGCAACCCAATTCCTAGTCGAATCAGACCAACAAACCTCGCCAGTTAAGCCCCAAAAGAAAACCCCCATACCTCAAATCAAGAGAAAGCAATCTAAAAACAGAGCCAAAGAAGGTATGGAACAAGAAGAGGAACTAGAACCCATTACCATATCATCATCATCATCATCTTCTTCAACCCAAAGGCTGTTTTCAAGCTCTGGATTGGGTGAGAAACTGGTGGATGATGAAGCTTGCGGTGCAGGGAAGAAAGAGTGTGCGCTGCAGACACTGACGTTGGGTGGTGGTGTGGGAAACAATGGCGGTAAGATCTGTGGTGGTGGTGGAGGGAGGAAAGGATCTGACGGTGGAGATGAGTCTGGCTTCTCTGAGAGGAACGATAACCATGAGATTAATAATACTGATGCTTATTACCAGAAAATGATTCAAGCAGACCCCAGCAATCCACTCTTACTTAGCAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGACCATGATAAAGCGGAGGAGTACTGTGAGAGAGCAATTTTGGCTAATCCGAATGATGGCGATGTTTTATCAACATATGCTGCTCTCATATGGAACACACAGAAGGATGCTCAACGAGCTGAGAATTATTTTGATCAAGCTGTTAAAGCTTCCCCAGATGATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

271

Amino Acids

29.5

Weight (kDa)

5.54

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 181 - 228 1.2e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 393, 459, 662
AclWI GGATC 1 cut(s) 502
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 2 cut(s) 142, 704
AgsI TTSAA 5 cut(s) 21, 34, 333, 351, 584
AluBI AGCT 6 cut(s) 15, 354, 389, 767, 788, 797
AluI AGCT 6 cut(s) 15, 354, 389, 767, 788, 797
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 1 cut(s) 427
ApeKI GCWGC 2 cut(s) 418, 728
AseI ATTAAT 1 cut(s) 549
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 145, 640
AsuHPI GGTGA 2 cut(s) 130, 377
AvaII GGWCC 2 cut(s) 145, 640
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 405, 715
BccI CCATC 1 cut(s) 698
BclI TGATCA 1 cut(s) 781
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 3 cut(s) 68, 173, 293
BfmI CTRYAG 1 cut(s) 419
BglII AGATCT 1 cut(s) 465
BisI GCNGC 2 cut(s) 419, 729
BlsI GCNGC 2 cut(s) 420, 730
BmcAI AGTACT 1 cut(s) 671
Bme18I GGWCC 2 cut(s) 145, 640
BmgT120I GGNCC 2 cut(s) 145, 640
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 2 cut(s) 550, 745
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 141, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 704
Bse1I ACTGG 3 cut(s) 80, 200, 378
BseDI CCNNGG 2 cut(s) 141, 643
BseGI GGATG 2 cut(s) 385, 760
BseLI CCNNNNNNNGG 2 cut(s) 142, 704
BseMII CTCAG 2 cut(s) 516, 759
BseNI ACTGG 3 cut(s) 80, 200, 378
BseRI GAGGAG 2 cut(s) 660, 680
BseXI GCAGC 2 cut(s) 405, 715
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 142, 704
BsmAI GTCTC 1 cut(s) 642
Bso31I GGTCTC 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 465, 494, 781
BspACI CCGC 3 cut(s) 393, 459, 662
BspCNI CTCAG 2 cut(s) 517, 760
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 423
BspPI GGATC 1 cut(s) 502
BspQI GCTCTTC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 642
BsrI ACTGG 3 cut(s) 80, 200, 378
BssECI CCNNGG 2 cut(s) 141, 643
BssMI GATC 3 cut(s) 465, 494, 781
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 503, 674
Bst6I CTCTTC 2 cut(s) 22, 279
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 4 cut(s) 8, 525, 611, 768
BstF5I GGATG 2 cut(s) 385, 760
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 3 cut(s) 468, 497, 784
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 3 cut(s) 465, 494, 781
BstMWI GCNNNNNNNGC 5 cut(s) 205, 395, 689, 764, 794
BstSFI CTRYAG 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 405, 715
BstX2I RGATCY 2 cut(s) 465, 494
BstYI RGATCY 2 cut(s) 465, 494
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 2 cut(s) 385, 760
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 427
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 145, 640
Csp6I GTAC 1 cut(s) 670
CviAII CATG 3 cut(s) 39, 542, 653
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 4 cut(s) 8, 525, 611, 768
DpnI GATC 3 cut(s) 467, 496, 783
DpnII GATC 3 cut(s) 465, 494, 781
Eam1104I CTCTTC 2 cut(s) 22, 279
EarI CTCTTC 2 cut(s) 22, 279
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 145, 640
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 42, 545, 656
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 3 cut(s) 38, 541, 652
FauNDI CATATG 2 cut(s) 724, 737
FbaI TGATCA 1 cut(s) 781
Fnu4HI GCNGC 2 cut(s) 419, 729
FokI GGATG 2 cut(s) 392, 767
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 419, 729
FspBI CTAG 3 cut(s) 68, 173, 293
GlaI GCGC 1 cut(s) 417
GluI GCNGC 2 cut(s) 419, 729
GsaI CCCAGC 1 cut(s) 597
HhaI GCGC 1 cut(s) 418
Hin1II CATG 3 cut(s) 42, 545, 656
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 387, 795
HinfI GANTC 3 cut(s) 179, 512, 580
HphI GGTGA 2 cut(s) 130, 377
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 184, 499, 526, 644, 699
Hpy188III TCNNGA 3 cut(s) 31, 238, 357
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 263, 745
HpyCH4III ACNGT 2 cut(s) 503, 674
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 398, 421, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 205, 395, 689, 764, 794
HpyF3I CTNAG 4 cut(s) 8, 525, 611, 768
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 42, 545, 656
HspAI GCGC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 3 cut(s) 465, 494, 781
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 9 cut(s) 87, 93, 213, 342, 359, 384, 501, 584, 607
Lsp1109I GCAGC 2 cut(s) 405, 715
LweI GCATC 2 cut(s) 550, 745
MaeI CTAG 3 cut(s) 68, 173, 293
MaeII ACGT 1 cut(s) 431
MalI GATC 3 cut(s) 467, 496, 783
MboI GATC 3 cut(s) 465, 494, 781
MboII GAAGA 7 cut(s) 9, 83, 114, 296, 318, 321, 415
MflI RGATCY 2 cut(s) 465, 494
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 167, 684, 772
MlyI GAGTC 1 cut(s) 521
MseI TTAA 3 cut(s) 204, 549, 792
MwoI GCNNNNNNNGC 5 cut(s) 205, 395, 689, 764, 794
NdeI CATATG 2 cut(s) 724, 737
NdeII GATC 3 cut(s) 465, 494, 781
NlaIII CATG 3 cut(s) 42, 545, 656
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 179, 580
PkrI GCNGC 2 cut(s) 420, 730
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 593
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 145, 640
PstI CTGCAG 1 cut(s) 423
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 465, 494
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 204, 549, 792
SatI GCNGC 2 cut(s) 419, 729
Sau3AI GATC 3 cut(s) 465, 494, 781
Sau96I GGNCC 2 cut(s) 145, 640
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 1 cut(s) 521
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 2 cut(s) 550, 745
SfcI CTRYAG 1 cut(s) 419
SinI GGWCC 2 cut(s) 145, 640
Sse9I AATT 3 cut(s) 167, 684, 772
SsiI CCGC 3 cut(s) 393, 459, 662
SspMI CTAG 3 cut(s) 68, 173, 293
SstI GAGCTC 1 cut(s) 17
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 503, 674
TaiI ACGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 97, 177
TasI AATT 3 cut(s) 167, 684, 772
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 2 cut(s) 179, 580
Tru1I TTAA 3 cut(s) 204, 549, 792
Tru9I TTAA 3 cut(s) 204, 549, 792
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 418, 728
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 145, 640
VspI ATTAAT 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 3 cut(s) 68, 173, 293
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.