Rh2DG400300
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013935
Physical Location & Seq
Reverse (-)
58255397 .. 58257846
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG400300.1

Sequence Viewer

Length: 810 bp
ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCCCACTCCAAAGACCCCCAACTAGAGCCAGAGCCAGTTCTCAATCTTCCTCGAACCAAGTCAGTCAACTTATCATCTTCTCTTCACACCCTCACCTTGGACCCAACAAAGAAAGCAACCCAATTCCTAGTCGAATCAGACCAACAAACCTCGCCAGTTAAGCCCCAAAAGAAAACCCCCATACCTCAAATCAAGAGAAAGCAATCTAAAAACAGAGCCAAAGTGGGTATGGAACAAGAAGAGGAACTAGAACCCATTACCATATCATCATCATCTTCTTCAACCCAAAGGCTGTTTTCAAGCTCTGGATTGGGTGAGAAACTGGTGGATGATGAAGCTTGCGGTGCAGGGAAGAAAGAGTGTGCGCTGCAGACACTGACGGTGGGTGGTGGTGTGGGAAACAATGGCGGTAAGATCTGTGGTGGTGGTGGAGGGAGGAAAGGATCTGACGGTGGAGATGAGTCTGGCTTCTCTGAGAGGAACAATAACCATGGGATTAATAATACTGATGCTTATTACCAGAAAATGATTCAAGCAGACCCCAGCAATCCACTCTTACTTAGCAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGACCATGATAAAGCGGGGGAGTACTGTGAGAGAGCAATTTTGGCTAATCCGAATGATGGCGATGTTTTATCAACATATGCTACTCTCATATGGAACACACAGAAGGATGCTCAACGAGCTGAGAATTATTTTGATCAAGCTGTTAAAGCTTCCCCAGATGATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

269

Amino Acids

29.17

Weight (kDa)

6.45

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 180 - 226 5.9e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 387, 453, 656
AclWI GGATC 1 cut(s) 496
AfaI GTAC 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 142, 698
AgsI TTSAA 5 cut(s) 21, 34, 327, 345, 578
AluBI AGCT 6 cut(s) 15, 348, 383, 761, 782, 791
AluI AGCT 6 cut(s) 15, 348, 383, 761, 782, 791
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 412
AseI ATTAAT 1 cut(s) 543
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 145, 634
AsuHPI GGTGA 2 cut(s) 130, 371
AvaII GGWCC 2 cut(s) 145, 634
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 399
BccI CCATC 1 cut(s) 692
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 3 cut(s) 68, 173, 293
BfmI CTRYAG 1 cut(s) 413
BglII AGATCT 1 cut(s) 459
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
BmcAI AGTACT 1 cut(s) 665
Bme18I GGWCC 2 cut(s) 145, 634
BmgT120I GGNCC 2 cut(s) 145, 634
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 2 cut(s) 544, 739
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 3 cut(s) 141, 535, 637
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 698
Bse1I ACTGG 3 cut(s) 80, 200, 372
BseDI CCNNGG 3 cut(s) 141, 535, 637
BseGI GGATG 2 cut(s) 379, 754
BseLI CCNNNNNNNGG 2 cut(s) 142, 698
BseMII CTCAG 2 cut(s) 510, 753
BseNI ACTGG 3 cut(s) 80, 200, 372
BseRI GAGGAG 1 cut(s) 654
BseXI GCAGC 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 142, 698
BsmAI GTCTC 1 cut(s) 636
Bso31I GGTCTC 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 459, 488, 775
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 3 cut(s) 387, 453, 656
BspCNI CTCAG 2 cut(s) 511, 754
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 636
BsrI ACTGG 3 cut(s) 80, 200, 372
BssECI CCNNGG 3 cut(s) 141, 535, 637
BssMI GATC 3 cut(s) 459, 488, 775
BssT1I CCWWGG 2 cut(s) 141, 535
Bst4CI ACNGT 3 cut(s) 427, 497, 668
Bst6I CTCTTC 3 cut(s) 22, 132, 279
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 8, 519, 605, 762
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 2 cut(s) 379, 754
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 3 cut(s) 462, 491, 778
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 3 cut(s) 459, 488, 775
BstMWI GCNNNNNNNGC 5 cut(s) 205, 389, 683, 758, 788
BstSFI CTRYAG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 459, 488
BstYI RGATCY 2 cut(s) 459, 488
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 2 cut(s) 379, 754
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 145, 634
Csp6I GTAC 1 cut(s) 664
CviAII CATG 3 cut(s) 39, 536, 647
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 4 cut(s) 8, 519, 605, 762
DpnI GATC 3 cut(s) 461, 490, 777
DpnII GATC 3 cut(s) 459, 488, 775
Eam1104I CTCTTC 3 cut(s) 22, 132, 279
EarI CTCTTC 3 cut(s) 22, 132, 279
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 141, 535
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 145, 634
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 141, 535
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 141, 535
FaeI CATG 3 cut(s) 42, 539, 650
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 3 cut(s) 38, 535, 646
FauI CCCGC 1 cut(s) 649
FauNDI CATATG 2 cut(s) 718, 731
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 2 cut(s) 386, 761
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 413
FspBI CTAG 3 cut(s) 68, 173, 293
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 413
GsaI CCCAGC 1 cut(s) 591
HhaI GCGC 1 cut(s) 412
Hin1II CATG 3 cut(s) 42, 539, 650
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 381, 789
HinfI GANTC 3 cut(s) 179, 506, 574
HphI GGTGA 2 cut(s) 130, 371
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 184, 493, 520, 638, 693
Hpy188III TCNNGA 3 cut(s) 31, 238, 351
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 739
HpyCH4III ACNGT 3 cut(s) 427, 497, 668
HpyCH4V TGCA 3 cut(s) 392, 415, 617
HpyF10VI GCNNNNNNNGC 5 cut(s) 205, 389, 683, 758, 788
HpyF3I CTNAG 4 cut(s) 8, 519, 605, 762
Hsp92II CATG 3 cut(s) 42, 539, 650
HspAI GCGC 1 cut(s) 410
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 3 cut(s) 459, 488, 775
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 9 cut(s) 87, 93, 213, 336, 353, 378, 495, 578, 601
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 2 cut(s) 544, 739
MaeI CTAG 3 cut(s) 68, 173, 293
MalI GATC 3 cut(s) 461, 490, 777
MboI GATC 3 cut(s) 459, 488, 775
MboII GAAGA 8 cut(s) 9, 83, 114, 119, 296, 312, 315, 409
MflI RGATCY 2 cut(s) 459, 488
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 167, 678, 766
MlyI GAGTC 1 cut(s) 515
MseI TTAA 3 cut(s) 204, 543, 786
MwoI GCNNNNNNNGC 5 cut(s) 205, 389, 683, 758, 788
NcoI CCATGG 1 cut(s) 535
NdeI CATATG 2 cut(s) 718, 731
NdeII GATC 3 cut(s) 459, 488, 775
NlaIII CATG 3 cut(s) 42, 539, 650
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 179, 574
PkrI GCNGC 1 cut(s) 414
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 587
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 145, 634
PstI CTGCAG 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 459, 488
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 204, 543, 786
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 3 cut(s) 459, 488, 775
Sau96I GGNCC 2 cut(s) 145, 634
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 515
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 2 cut(s) 544, 739
SfcI CTRYAG 1 cut(s) 413
SinI GGWCC 2 cut(s) 145, 634
Sse9I AATT 3 cut(s) 167, 678, 766
SsiI CCGC 3 cut(s) 387, 453, 656
SspMI CTAG 3 cut(s) 68, 173, 293
SstI GAGCTC 1 cut(s) 17
StyI CCWWGG 2 cut(s) 141, 535
TaaI ACNGT 3 cut(s) 427, 497, 668
TaqI TCGA 2 cut(s) 97, 177
TasI AATT 3 cut(s) 167, 678, 766
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 2 cut(s) 179, 574
Tru1I TTAA 3 cut(s) 204, 543, 786
Tru9I TTAA 3 cut(s) 204, 543, 786
TscAI CASTG 1 cut(s) 426
TseI GCWGC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 1 cut(s) 426
VpaK11BI GGWCC 2 cut(s) 145, 634
VspI ATTAAT 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 3 cut(s) 68, 173, 293
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.