Rroxscaffold_2G00108970
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013935
Physical Location & Seq
Forward (+)
33051510 .. 33053533
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108970.1

Sequence Viewer

Length: 969 bp
ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCCCACTCCAAAGACCCCCAACCAGAGCCAGAACCAGTTCTCAATCTTCCTAGAACCAGGTCAATCAACTTGTCATCTTCTCTTCACTCCCCGACCTTTGACCCAACAAAGAAAGCAACCCAAGTCCTAGTCGAATCAGACCAACAAACCTCACCAGTTAATCCCCAAAAGAAAACCCCCATACCTCAAATCCAGATAAAGAAATCTAAAAACAGAGCCAAAGAATGTTTGGAACAAGAAGAGGAACTAAAACCCATTACCATATCATCATCATCTTCAACCCAAAGGCTGTTTTCAAGCTCTGGATTGGGTGGGAAACTCGTGGATGACGAAGCTTGTGGTGCAGAGAAGAAAGAGTGTGTGTTGCAGACACTGACGGTGGGTGGTGGTGTGGGAAATAATGGCGGTAAGATCTGTTGTGGTGGTGGAGGGAGGAAAGGATCGGACGGTGGAGATAAGTCTGGCTTCTCTGAGAGTAACAATAACCATGGGATTGATAATACTGATGCTTATTACCAGAAAATGATTCAAGCAGACCCCAGCAATCCACTCTTACTTAGCAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGACCATGATAAAGCGGAGGAGTATTGTGAGAGAGCAATTTTGGCTAATCCGAATGATGGCGATGTTTTATCAACATATGCTGATCTCATATGGAACACACATAAGGATGCTCAACGAGCTGAGAATTATTTTGATCAAGCTGTTAAAGCTTCCCCAGATGATAGTTATGTCCTGGCTTCGTATGCTCGATTCCTGTGGGATGCTGAAGAAGATGAACAAGAAGATGAAGGAAATGAAAGGGTTCAACATGGAACTGATCAAAGTCACACATCTTCATCCAATTTCTACCACGGAGCTCGTCAGCAATCTCCTATAACTGCAGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

322

Amino Acids

35.19

Weight (kDa)

5.19

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 180 - 226 3e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 450, 653
AclWI GGATC 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 864
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 6 cut(s) 21, 34, 324, 342, 575, 884
AjnI CCWGG 2 cut(s) 101, 810
AluBI AGCT 8 cut(s) 15, 345, 380, 758, 779, 788, 935, 962
AluI AGCT 8 cut(s) 15, 345, 380, 758, 779, 788, 935, 962
Alw21I GWGCWC 2 cut(s) 17, 937
Alw26I GTCTC 1 cut(s) 633
AlwI GGATC 1 cut(s) 493
AlwNI CAGNNNCTG 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 959
Asp700I GAANNNNTTC 2 cut(s) 81, 879
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 631
BanII GRGCYC 2 cut(s) 17, 937
BauI CACGAG 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 17, 937
BccI CCATC 1 cut(s) 689
BciT130I CCWGG 2 cut(s) 103, 812
BclI TGATCA 2 cut(s) 772, 895
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 2 cut(s) 96, 173
BfmI CTRYAG 1 cut(s) 957
BglII AGATCT 1 cut(s) 456
BisI GCNGC 1 cut(s) 960
BlsI GCNGC 1 cut(s) 961
Bme1390I CCNGG 2 cut(s) 103, 812
Bme18I GGWCC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 631
BmrFI CCNGG 2 cut(s) 103, 812
BmsI GCATC 3 cut(s) 541, 736, 829
BsaI GGTCTC 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 532, 634, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 80, 200
BseBI CCWGG 2 cut(s) 103, 812
BseDI CCNNGG 3 cut(s) 532, 634, 928
BseGI GGATG 4 cut(s) 376, 751, 844, 914
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 2 cut(s) 507, 750
BseNI ACTGG 2 cut(s) 80, 200
BseRI GAGGAG 2 cut(s) 651, 671
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 17, 937
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 1 cut(s) 633
Bso31I GGTCTC 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 17, 937
Bsp143I GATC 5 cut(s) 456, 485, 721, 772, 895
Bsp19I CCATGG 1 cut(s) 532
BspACI CCGC 2 cut(s) 450, 653
BspCNI CTCAG 2 cut(s) 508, 751
BspMAI CTGCAG 1 cut(s) 961
BspPI GGATC 1 cut(s) 493
BspQI GCTCTTC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 633
BsrI ACTGG 2 cut(s) 80, 200
BssECI CCNNGG 3 cut(s) 532, 634, 928
BssMI GATC 5 cut(s) 456, 485, 721, 772, 895
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 532
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 103, 812
Bst4CI ACNGT 2 cut(s) 424, 494
Bst6I CTCTTC 3 cut(s) 22, 132, 279
BstDEI CTNAG 4 cut(s) 8, 516, 602, 759
BstDSI CCRYGG 2 cut(s) 532, 928
BstF5I GGATG 4 cut(s) 376, 751, 844, 914
BstKTI GATC 5 cut(s) 459, 488, 724, 775, 898
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 5 cut(s) 456, 485, 721, 772, 895
BstMWI GCNNNNNNNGC 5 cut(s) 386, 680, 755, 785, 821
BstNI CCWGG 2 cut(s) 103, 812
BstSCI CCNGG 2 cut(s) 101, 810
BstSFI CTRYAG 1 cut(s) 957
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BtgI CCRYGG 2 cut(s) 532, 928
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 4 cut(s) 376, 751, 844, 914
BtsIMutI CAGTG 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 631
CsiI ACCWGGT 1 cut(s) 101
CviAII CATG 4 cut(s) 39, 533, 644, 887
DdeI CTNAG 4 cut(s) 8, 516, 602, 759
DpnI GATC 5 cut(s) 458, 487, 723, 774, 897
DpnII GATC 5 cut(s) 456, 485, 721, 772, 895
Eam1104I CTCTTC 3 cut(s) 22, 132, 279
EarI CTCTTC 3 cut(s) 22, 132, 279
Ecl136II GAGCTC 2 cut(s) 15, 935
Eco130I CCWWGG 1 cut(s) 532
Eco24I GRGCYC 2 cut(s) 17, 937
Eco31I GGTCTC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 2 cut(s) 15, 935
Eco57I CTGAAG 1 cut(s) 864
EcoICRI GAGCTC 2 cut(s) 15, 935
EcoRII CCWGG 2 cut(s) 101, 810
EcoT14I CCWWGG 1 cut(s) 532
EcoT38I GRGCYC 2 cut(s) 17, 937
ErhI CCWWGG 1 cut(s) 532
FaeI CATG 4 cut(s) 42, 536, 647, 890
FalI AAGNNNNNCTT 3 cut(s) 33, 494, 526
FatI CATG 4 cut(s) 38, 532, 643, 886
FauNDI CATATG 2 cut(s) 715, 728
FbaI TGATCA 2 cut(s) 772, 895
Fnu4HI GCNGC 1 cut(s) 960
FokI GGATG 4 cut(s) 383, 758, 851, 901
FriOI GRGCYC 2 cut(s) 17, 937
Fsp4HI GCNGC 1 cut(s) 960
FspBI CTAG 2 cut(s) 96, 173
GluI GCNGC 1 cut(s) 960
GsaI CCCAGC 1 cut(s) 588
Hin1II CATG 4 cut(s) 42, 536, 647, 890
HindIII AAGCTT 2 cut(s) 378, 786
HinfI GANTC 3 cut(s) 179, 571, 828
HphI GGTGA 1 cut(s) 189
Hpy188I TCNGA 5 cut(s) 184, 490, 517, 635, 690
Hpy188III TCNNGA 3 cut(s) 31, 238, 348
HpyAV CCTTC 1 cut(s) 860
HpyCH4III ACNGT 2 cut(s) 424, 494
HpyCH4V TGCA 4 cut(s) 389, 412, 614, 959
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 680, 755, 785, 821
HpyF3I CTNAG 4 cut(s) 8, 516, 602, 759
Hsp92II CATG 4 cut(s) 42, 536, 647, 890
Ksp22I TGATCA 2 cut(s) 772, 895
Kzo9I GATC 5 cut(s) 456, 485, 721, 772, 895
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 12, 932
LweI GCATC 3 cut(s) 541, 736, 829
MabI ACCWGGT 1 cut(s) 101
MaeI CTAG 2 cut(s) 96, 173
MaeIII GTNAC 2 cut(s) 521, 902
MalI GATC 5 cut(s) 458, 487, 723, 774, 897
MboI GATC 5 cut(s) 456, 485, 721, 772, 895
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 2 cut(s) 17, 937
MluCI AATT 3 cut(s) 675, 763, 919
MnlI CCTC 8 cut(s) 205, 240, 280, 467, 471, 622, 629, 649
MroXI GAANNNNTTC 2 cut(s) 81, 879
MseI TTAA 3 cut(s) 204, 783, 967
MslI CAYNNNNRTG 1 cut(s) 744
MspR9I CCNGG 2 cut(s) 103, 812
MvaI CCWGG 2 cut(s) 103, 812
MwoI GCNNNNNNNGC 5 cut(s) 386, 680, 755, 785, 821
NcoI CCATGG 1 cut(s) 532
NdeI CATATG 2 cut(s) 715, 728
NdeII GATC 5 cut(s) 456, 485, 721, 772, 895
NlaIII CATG 4 cut(s) 42, 536, 647, 890
NmuCI GTSAC 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdmI GAANNNNTTC 2 cut(s) 81, 879
PfeI GAWTC 3 cut(s) 179, 571, 828
PkrI GCNGC 1 cut(s) 961
Psp124BI GAGCTC 2 cut(s) 17, 937
Psp6I CCWGG 2 cut(s) 101, 810
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 2 cut(s) 101, 810
PspPI GGNCC 1 cut(s) 631
PstI CTGCAG 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 2 cut(s) 17, 937
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 204, 783, 967
SatI GCNGC 1 cut(s) 960
Sau3AI GATC 5 cut(s) 456, 485, 721, 772, 895
Sau96I GGNCC 1 cut(s) 631
ScrFI CCNGG 2 cut(s) 103, 812
SduI GDGCHC 2 cut(s) 17, 937
SexAI ACCWGGT 1 cut(s) 101
SfaNI GCATC 3 cut(s) 541, 736, 829
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 3 cut(s) 675, 763, 919
SsiI CCGC 2 cut(s) 450, 653
SspMI CTAG 2 cut(s) 96, 173
SstI GAGCTC 2 cut(s) 17, 937
StyD4I CCNGG 2 cut(s) 101, 810
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 424, 494
TaqI TCGA 2 cut(s) 177, 826
TasI AATT 3 cut(s) 675, 763, 919
TfiI GAWTC 3 cut(s) 179, 571, 828
Tru1I TTAA 3 cut(s) 204, 783, 967
Tru9I TTAA 3 cut(s) 204, 783, 967
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 1 cut(s) 959
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 4 cut(s) 867, 879, 888, 903
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmnI GAANNNNTTC 2 cut(s) 81, 879
XspI CTAG 2 cut(s) 96, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.