Rorug02G0325900
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013935
Physical Location & Seq
Reverse (-)
39982583 .. 39985397
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0325900.1

Sequence Viewer

Length: 543 bp
ATGATTGCATTGAAGTTTGGCTTCTGTGGAGAAGGATCATTGGCAAAAGGCAAAGCCGATTTTTTCCTGTTCTTGATCTGTGCATACGTAGCTGGATTTGCATGGTCTTGGGGTCTGTTGGGGTGGTTGGTGCCTAGTGAAATATGTCCTCTGGAAATCCGATCAGCTAGACAGGCCATCAATGTCTCAGTTAACATCTTTGTGATTATTATGACCATTTTCGTTGCGCTTCTTATGCTTGAGACAAAGAATGTTCCCATTGAAGAGATCAATGCAGTCTGGAAAGCTCAATGGTTTTGGGGCAAGTACATCCCGGTTGATGCTGTTATTGATGGTCACCATCCACCATCGCAGACGACCGCCGATGATGACGACGAGGATGATGAACTCAGTTTTCGATTCCCTGGTCAGCCACCTTATGCAGATTTTGATGACGACGATGATGATGGTTGGGAATTCAAAGCTGCAGAACTAGAGAACCAGGTTGGCAATGAGAATTCCAAGTATGATGGAGGTTCAAATCCAGGGATCAGTTGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

180

Amino Acids

20.02

Weight (kDa)

4.13

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 16 - 67 2e-08 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AciI CCGC 1 cut(s) 360
AclWI GGATC 2 cut(s) 43, 536
AcsI RAATTY 2 cut(s) 455, 496
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 4 cut(s) 13, 263, 460, 519
AjnI CCWGG 3 cut(s) 403, 480, 523
AluBI AGCT 4 cut(s) 92, 167, 287, 464
AluI AGCT 4 cut(s) 92, 167, 287, 464
Alw26I GTCTC 2 cut(s) 190, 236
AlwI GGATC 2 cut(s) 43, 536
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 455, 496
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 329
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 451
BccI CCATC 6 cut(s) 185, 326, 348, 355, 440, 503
BciT130I CCWGG 3 cut(s) 405, 482, 525
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 190, 236
BfaI CTAG 3 cut(s) 135, 168, 473
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 4 cut(s) 314, 405, 482, 525
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 4 cut(s) 314, 405, 482, 525
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 314
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 403, 524
Bse3DI GCAATG 1 cut(s) 496
BseBI CCWGG 3 cut(s) 405, 482, 525
BseDI CCNNGG 2 cut(s) 403, 524
BseGI GGATG 3 cut(s) 309, 340, 385
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 201, 403
BseXI GCAGC 1 cut(s) 451
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 190, 236
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 5 cut(s) 35, 75, 161, 267, 528
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 200, 402
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 2 cut(s) 43, 536
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 403, 524
BssMI GATC 5 cut(s) 35, 75, 161, 267, 528
Bst2UI CCWGG 3 cut(s) 405, 482, 525
Bst6I CTCTTC 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 187, 389
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 3 cut(s) 309, 340, 385
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 5 cut(s) 38, 78, 164, 270, 531
BstMAI GTCTC 2 cut(s) 190, 236
BstMBI GATC 5 cut(s) 35, 75, 161, 267, 528
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 173, 235
BstNI CCWGG 3 cut(s) 405, 482, 525
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 312, 403, 480, 523
BstSFI CTRYAG 1 cut(s) 465
BstSNI TACGTA 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 3 cut(s) 309, 340, 385
CfoI GCGC 1 cut(s) 229
CsiI ACCWGGT 1 cut(s) 480
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 102
CviJI RGCY 8 cut(s) 21, 56, 92, 167, 176, 287, 412, 464
CviKI_1 RGCY 8 cut(s) 21, 56, 92, 167, 176, 287, 412, 464
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 187, 389
DpnI GATC 5 cut(s) 37, 77, 163, 269, 530
DpnII GATC 5 cut(s) 35, 75, 161, 267, 528
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco105I TACGTA 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRI GAATTC 2 cut(s) 455, 496
EcoRII CCWGG 3 cut(s) 403, 480, 523
FaeI CATG 1 cut(s) 105
FaiI YATR 7 cut(s) 85, 103, 145, 212, 236, 420, 507
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 3 cut(s) 296, 327, 392
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 3 cut(s) 135, 168, 473
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 314
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 399
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 73, 152, 280
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 2 cut(s) 377, 440
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 8, 83, 101, 275, 422, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 173, 235
HpyF3I CTNAG 2 cut(s) 187, 389
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 1 cut(s) 227
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 5 cut(s) 35, 75, 161, 267, 528
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 310
MabI ACCWGGT 1 cut(s) 480
MaeI CTAG 3 cut(s) 135, 168, 473
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 335
MalI GATC 5 cut(s) 37, 77, 163, 269, 530
MboI GATC 5 cut(s) 35, 75, 161, 267, 528
MboII GAAGA 1 cut(s) 275
MluCI AATT 2 cut(s) 455, 496
MnlI CCTC 3 cut(s) 159, 370, 506
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 4 cut(s) 314, 405, 482, 525
MvaI CCWGG 3 cut(s) 405, 482, 525
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 173, 235
NciI CCSGG 1 cut(s) 314
NdeII GATC 5 cut(s) 35, 75, 161, 267, 528
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 88
Psp6I CCWGG 3 cut(s) 403, 480, 523
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 3 cut(s) 403, 480, 523
PspN4I GGNNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 5 cut(s) 35, 75, 161, 267, 528
ScrFI CCNGG 4 cut(s) 314, 405, 482, 525
SetI ASST 8 cut(s) 90, 94, 169, 289, 418, 466, 486, 517
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SnaBI TACGTA 1 cut(s) 88
Sse9I AATT 2 cut(s) 455, 496
SsiI CCGC 1 cut(s) 360
SspMI CTAG 3 cut(s) 135, 168, 473
StyD4I CCNGG 4 cut(s) 312, 403, 480, 523
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 397
TasI AATT 2 cut(s) 455, 496
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 399
XapI RAATTY 2 cut(s) 455, 496
XspI CTAG 3 cut(s) 135, 168, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.