MD17G1210200.v1.1
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013935
Physical Location & Seq
Forward (+)
25508728 .. 25511284
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1210200.v1.1.491

Sequence Viewer

Length: 966 bp
ATGCCTCTGAGAAGCTCCTCGACACCGATCCTGAACTCATGGATGTCCCACTGCAAAGACTCCTCGCCGGAGCCGGAGCCACTCCTCTGTAGAAACAGGTCTGTCTCCCTATCATTGTGCACCTTTCACCCACCTACAGCTGACACAACAAAAACCCAAGTCTCCCTAGAATCCGACATCAAAATCCAACAGAAACCCAGAAACAAGAAGCTTAACGTCCCCATACCTCGAAGCCTCCGGAAGAAATCGAAAACCAAGGCCGAGAAACCAGAGGAACCGGAAGAGGAGATAAAACCCACTTCGAGATTGTGGTTCGGAGCTGAAAGGCTGTTTTCTAGCTCTGGTTTGGGGGAGAAAATCATGGATGGTGAGGACTATGGTGGGGGGAAGAAGAAAGAGAGTGTTTTGCAGACGCTGGTGGTGGGGGGCGGTGTGGGGAATAGTGGCGGGAAGATTTGCGGCGGCGGCGGTGGCGGGAAAGGATCAGACGGCGGAGAAGGAAGTGGGTTTGGTTTCTTCGAGGGTAATAATCGTGGGAGTGGGAGTACTGATGCTTATTATCAGAAGATGATTGAAGCTGACCCGGGAAATGCTCTCTTACTTGGCAACTATGCAAAGTTTTTAAAAGAGGTCCGAGGAGATTATGAGAAAGCAGAGGAGTATTGTGGAAGATCAATCTTGGCGAACCCGAGTGATGCGAATACCTTATCACTGTACGGTGATCTAATATGGAATGCTCACAGGGATGCTGAACGAGCTGAGAATTATTTTGATCAAGCTGTTAAAACTTCCCCAGACGACTGTTATGTCCTGGCTTCATATGCTCATTTCCTTTGGGATGCTGAAGACGACGAAGATGATGAAGAAAATCAAGGGGTTCAACGTGAAACCGACCGGAGCCACACGTCCTCGTCGAATTTCTTCCATGGATCTCCTCACCACTCTCCTTTAACTGCAGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

322

Amino Acids

34.98

Weight (kDa)

5.39

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 8 cut(s) 429, 447, 459, 462, 465, 468, 474, 492
AclWI GGATC 3 cut(s) 22, 490, 937
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 2 cut(s) 547, 716
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 2 cut(s) 575, 881
AjiI CACGTC 1 cut(s) 906
AjnI CCWGG 1 cut(s) 810
AluBI AGCT 8 cut(s) 15, 140, 211, 320, 339, 578, 758, 779
AluI AGCT 8 cut(s) 15, 140, 211, 320, 339, 578, 758, 779
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 109, 166
Alw44I GTGCAC 1 cut(s) 118
AlwI GGATC 3 cut(s) 22, 490, 937
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 2 cut(s) 583, 688
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 956
ApoI RAATTY 1 cut(s) 916
Asp700I GAANNNNTTC 1 cut(s) 920
AspS9I GGNCC 1 cut(s) 631
AsuC2I CCSGG 2 cut(s) 584, 585
AsuHPI GGTGA 4 cut(s) 119, 380, 731, 929
AvaI CYCGRG 2 cut(s) 583, 688
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 1 cut(s) 359
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 812
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 584, 585
BcoDI GTCTC 2 cut(s) 109, 166
BfaI CTAG 2 cut(s) 167, 336
BfmI CTRYAG 3 cut(s) 88, 135, 954
BisI GCNGC 4 cut(s) 460, 463, 466, 957
BlsI GCNGC 4 cut(s) 461, 464, 467, 958
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 584, 585, 812
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 2 cut(s) 583, 688
BmgBI CACGTC 1 cut(s) 906
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 4 cut(s) 72, 78, 276, 899
BmrFI CCNGG 3 cut(s) 584, 585, 812
BmsI GCATC 4 cut(s) 541, 685, 736, 829
BpiI GAAGAC 1 cut(s) 852
BpuMI CCSGG 2 cut(s) 584, 585
BsaJI CCNNGG 4 cut(s) 255, 583, 634, 925
BsaWI WCCGGW 3 cut(s) 237, 277, 894
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 4 cut(s) 255, 583, 634, 925
BseGI GGATG 4 cut(s) 48, 370, 751, 844
BseMII CTCAG 1 cut(s) 750
BseRI GAGGAG 7 cut(s) 7, 52, 74, 299, 651, 671, 924
BseSI GKGCMC 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 895
BshFI GGCC 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 2 cut(s) 583, 688
BsiSI CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
BslFI GGGAC 2 cut(s) 31, 203
BsmAI GTCTC 2 cut(s) 109, 166
BsmFI GGGAC 2 cut(s) 31, 203
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 1 cut(s) 260
BsoBI CYCGRG 2 cut(s) 583, 688
Bsp1286I GDGCHC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 6 cut(s) 27, 482, 671, 721, 772, 929
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 8 cut(s) 429, 447, 459, 462, 465, 468, 474, 492
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 751
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 4 cut(s) 72, 78, 276, 899
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 3 cut(s) 22, 490, 937
BssECI CCNNGG 4 cut(s) 255, 583, 634, 925
BssMI GATC 6 cut(s) 27, 482, 671, 721, 772, 929
BssT1I CCWWGG 2 cut(s) 255, 925
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 3 cut(s) 714, 719, 803
Bst6I CTCTTC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 8, 759
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 4 cut(s) 48, 370, 751, 844
BstKTI GATC 6 cut(s) 30, 485, 674, 724, 775, 932
BstMAI GTCTC 2 cut(s) 109, 166
BstMBI GATC 6 cut(s) 27, 482, 671, 721, 772, 929
BstMCI CGRYCG 1 cut(s) 895
BstMWI GCNNNNNNNGC 4 cut(s) 465, 471, 755, 821
BstNI CCWGG 1 cut(s) 812
BstSCI CCNGG 3 cut(s) 582, 583, 810
BstSFI CTRYAG 3 cut(s) 88, 135, 954
BstSLI GKGCMC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 1 cut(s) 929
BstYI RGATCY 1 cut(s) 929
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 925
BtrI CACGTC 1 cut(s) 906
BtsCI GGATG 4 cut(s) 48, 370, 751, 844
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 710
CaiI CAGNNNCTG 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 631
Cfr9I CCCGGG 1 cut(s) 583
CseI GACGC 1 cut(s) 421
Csp6I GTAC 2 cut(s) 546, 715
CviAII CATG 3 cut(s) 39, 361, 926
CviQI GTAC 2 cut(s) 546, 715
DdeI CTNAG 2 cut(s) 8, 759
DpnI GATC 6 cut(s) 29, 484, 673, 723, 774, 931
DpnII GATC 6 cut(s) 27, 482, 671, 721, 772, 929
DraI TTTAAA 1 cut(s) 624
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 255, 925
Eco47I GGWCC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 2 cut(s) 583, 688
EcoRII CCWGG 1 cut(s) 810
EcoT14I CCWWGG 2 cut(s) 255, 925
ErhI CCWWGG 2 cut(s) 255, 925
FaeI CATG 3 cut(s) 42, 364, 929
FaqI GGGAC 2 cut(s) 31, 203
FatI CATG 3 cut(s) 38, 360, 925
FauI CCCGC 2 cut(s) 440, 467
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 4 cut(s) 460, 463, 466, 957
FokI GGATG 4 cut(s) 55, 377, 758, 851
Fsp4HI GCNGC 4 cut(s) 460, 463, 466, 957
FspBI CTAG 2 cut(s) 167, 336
GluI GCNGC 4 cut(s) 460, 463, 466, 957
HaeIII GGCC 1 cut(s) 260
HapII CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
HgaI GACGC 1 cut(s) 421
Hin1II CATG 3 cut(s) 42, 364, 929
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 59, 170
HpaII CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
HphI GGTGA 4 cut(s) 119, 380, 731, 929
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 6 cut(s) 9, 175, 317, 487, 564, 635
Hpy188III TCNNGA 3 cut(s) 31, 238, 303
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 854, 916
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 3 cut(s) 714, 719, 803
HpyCH4IV ACGT 3 cut(s) 216, 883, 905
HpyCH4V TGCA 5 cut(s) 54, 120, 409, 614, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 465, 471, 755, 821
HpyF3I CTNAG 2 cut(s) 8, 759
HpySE526I ACGT 3 cut(s) 216, 883, 905
Hsp92II CATG 3 cut(s) 42, 364, 929
Kpn2I TCCGGA 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 6 cut(s) 27, 482, 671, 721, 772, 929
LmnI GCTCC 5 cut(s) 20, 70, 76, 317, 897
LweI GCATC 4 cut(s) 541, 685, 736, 829
MaeI CTAG 2 cut(s) 167, 336
MaeII ACGT 3 cut(s) 216, 883, 905
MalI GATC 6 cut(s) 29, 484, 673, 723, 774, 931
MboI GATC 6 cut(s) 27, 482, 671, 721, 772, 929
MflI RGATCY 1 cut(s) 929
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 763, 916
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 198, 211
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 5 cut(s) 213, 623, 783, 950, 964
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
MspR9I CCNGG 3 cut(s) 584, 585, 812
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 812
MwoI GCNNNNNNNGC 4 cut(s) 465, 471, 755, 821
NciI CCSGG 2 cut(s) 584, 585
NcoI CCATGG 1 cut(s) 925
NdeI CATATG 1 cut(s) 820
NdeII GATC 6 cut(s) 27, 482, 671, 721, 772, 929
NlaIII CATG 3 cut(s) 42, 364, 929
NlaIV GGNNCC 4 cut(s) 72, 78, 276, 899
NmeAIII GCCGAG 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 911
PctI GAATGC 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 4 cut(s) 461, 464, 467, 958
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 4 cut(s) 72, 78, 276, 899
PspPI GGNCC 1 cut(s) 631
PstI CTGCAG 1 cut(s) 958
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 929
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 547, 716
RsaNI GTAC 2 cut(s) 546, 715
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 5 cut(s) 213, 623, 783, 950, 964
SatI GCNGC 4 cut(s) 460, 463, 466, 957
Sau3AI GATC 6 cut(s) 27, 482, 671, 721, 772, 929
Sau96I GGNCC 1 cut(s) 631
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 3 cut(s) 584, 585, 812
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 4 cut(s) 541, 685, 736, 829
SfcI CTRYAG 3 cut(s) 88, 135, 954
SinI GGWCC 1 cut(s) 631
SmaI CCCGGG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 2 cut(s) 763, 916
SsiI CCGC 8 cut(s) 429, 447, 459, 462, 465, 468, 474, 492
SspMI CTAG 2 cut(s) 167, 336
StyD4I CCNGG 3 cut(s) 582, 583, 810
StyI CCWWGG 2 cut(s) 255, 925
TaaI ACNGT 3 cut(s) 714, 719, 803
TaiI ACGT 3 cut(s) 219, 886, 908
TaqI TCGA 6 cut(s) 20, 229, 248, 302, 519, 914
TasI AATT 2 cut(s) 763, 916
TatI WGTACW 1 cut(s) 545
TauI GCSGC 3 cut(s) 462, 465, 468
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 5 cut(s) 213, 623, 783, 950, 964
Tru9I TTAA 5 cut(s) 213, 623, 783, 950, 964
TscAI CASTG 2 cut(s) 56, 717
TseI GCWGC 1 cut(s) 956
TspDTI ATGAA 2 cut(s) 807, 876
TspMI CCCGGG 1 cut(s) 583
TspRI CASTG 2 cut(s) 56, 717
VneI GTGCAC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 1 cut(s) 916
XmaI CCCGGG 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 2 cut(s) 167, 336
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.