Prupe.3G085500_v2.0.a1
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013935
Physical Location & Seq
Forward (+)
6298814 .. 6301105
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G085500.1

Sequence Viewer

Length: 969 bp
ATGCTTCTTAGAAGCTCCTCAGCTCCGATCTTCAACTCATGGCTTTCCCACTCAAAAGACTCCTCACCAGAGCCAGAGCCACTCCTCACTAGAACCAGGTCAGTTTCCTTATCATCATCATCTTCTTTTCACTCACCTTCAATCGACCCAACAAAGAAAACAACAACCCAAGTCTTGTTAGAAGCAGACATCCCAAGCCAACCTAAGCCCAAAGAGAAGAACCCCATACCTCTAAGCCTTGGAAAGAAATCTAAAACCAAGGCCAAAAATGTTGAAGAACAAGAAGAAGAGCTAAAACCCAGCTCAATATCTTCATCTGCGACGCAAAGGTTGTTCTCAAGCTCTGGTTTGGGTGAGAAGCTCATGGATGATGAAGACTCTGCTGTGGGGAAAGAAGACTATGGTTTGCAGACACTAGTTTTGGGTGGTGGTGCGGGAAGTAATGGTGGTAAGATCTGTGGTGGTGGTAGTAGCGGGAAAGGATCGGACGGTGGAGATGGAGGTTGGTCTGGTTTCTTTGAGAGTAACAATCATGGGAGTGGGAGCACAGATGCTTATTATCAGAAGATGATTCAAGCTGACCCGGGAAATGGCCTCTTACTTGGGAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGATTATGCTAAAGCAGAGGAGTACTGTGGAAGAGCGATTTTGGCTAACCCGAATGATGCCAATGTCTTATCACTATATGCTGATATAATATGGAAAACACAGAAGGATGCTGAACGAGCTGAGAATTACTATGATCAAGCTGTTAAAACTTCCCCAGACGACTGTTTTGTCCTGGCTTCATATGCTGAATTCCTTTGGGATGCTGAAGAAGAAGAAGAAGAAGATGAAGAAAATCAAGGGGTTAAACATGAAACCGAGCGCAGCCACACATCTTCGTCCAATTTCTTCCATGGAGCTCCTCACCATTCTCCCTTAACGACAGCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

323

Amino Acids

34.72

Weight (kDa)

4.93

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AciI CCGC 2 cut(s) 434, 474
AclWI GGATC 1 cut(s) 490
AcsI RAATTY 1 cut(s) 827
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 4 cut(s) 34, 141, 275, 575
AhlI ACTAGT 1 cut(s) 415
AjnI CCWGG 2 cut(s) 95, 810
Alw21I GWGCWC 2 cut(s) 548, 937
AlwI GGATC 1 cut(s) 490
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 2 cut(s) 261, 592
ApeKI GCWGC 1 cut(s) 900
ApoI RAATTY 1 cut(s) 827
ArsI GACNNNNNNTTYG 4 cut(s) 403, 435, 788, 820
AspLEI GCGC 1 cut(s) 900
AspS9I GGNCC 1 cut(s) 631
AsuC2I CCSGG 2 cut(s) 584, 585
AsuHPI GGTGA 4 cut(s) 57, 126, 365, 932
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 937
BbsI GAAGAC 2 cut(s) 381, 402
Bbv12I GWGCWC 2 cut(s) 548, 937
BbvCI CCTCAGC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 912
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 2 cut(s) 97, 812
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 584, 585
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 2 cut(s) 90, 416
BglII AGATCT 1 cut(s) 453
BisI GCNGC 1 cut(s) 901
BlsI GCNGC 1 cut(s) 902
BmcAI AGTACT 1 cut(s) 662
Bme1390I CCNGG 4 cut(s) 97, 584, 585, 812
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 631
BmrFI CCNGG 4 cut(s) 97, 584, 585, 812
BmsI GCATC 4 cut(s) 541, 685, 736, 829
BpiI GAAGAC 2 cut(s) 381, 402
Bpu10I CCTNAGC 2 cut(s) 19, 204
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 2 cut(s) 584, 585
BsaJI CCNNGG 5 cut(s) 238, 258, 583, 634, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 590
BseBI CCWGG 2 cut(s) 97, 812
BseDI CCNNGG 5 cut(s) 238, 258, 583, 634, 928
BseGI GGATG 4 cut(s) 189, 373, 751, 844
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 33, 750
BseRI GAGGAG 6 cut(s) 7, 52, 74, 651, 671, 927
BseXI GCAGC 1 cut(s) 912
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 263, 594
BsiHKAI GWGCWC 2 cut(s) 548, 937
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 590
BsnI GGCC 2 cut(s) 263, 594
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 2 cut(s) 548, 937
Bsp143I GATC 4 cut(s) 27, 453, 482, 772
Bsp19I CCATGG 1 cut(s) 928
BspACI CCGC 2 cut(s) 434, 474
BspANI GGCC 2 cut(s) 263, 594
BspCNI CTCAG 2 cut(s) 32, 751
BspPI GGATC 1 cut(s) 490
BspQI GCTCTTC 2 cut(s) 282, 664
BssECI CCNNGG 5 cut(s) 238, 258, 583, 634, 928
BssMI GATC 4 cut(s) 27, 453, 482, 772
BssT1I CCWWGG 3 cut(s) 238, 258, 928
Bst2UI CCWGG 2 cut(s) 97, 812
Bst4CI ACNGT 3 cut(s) 491, 665, 803
Bst6I CTCTTC 2 cut(s) 282, 664
BstDEI CTNAG 6 cut(s) 8, 19, 204, 233, 759, 966
BstDSI CCRYGG 1 cut(s) 928
BstF5I GGATG 4 cut(s) 189, 373, 751, 844
BstHHI GCGC 1 cut(s) 900
BstKTI GATC 4 cut(s) 30, 456, 485, 775
BstMBI GATC 4 cut(s) 27, 453, 482, 772
BstMWI GCNNNNNNNGC 3 cut(s) 680, 755, 821
BstNI CCWGG 2 cut(s) 97, 812
BstSCI CCNGG 4 cut(s) 95, 582, 583, 810
BstV1I GCAGC 1 cut(s) 912
BstV2I GAAGAC 2 cut(s) 381, 402
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BsuRI GGCC 2 cut(s) 263, 594
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 4 cut(s) 189, 373, 751, 844
CfoI GCGC 1 cut(s) 900
Cfr13I GGNCC 1 cut(s) 631
Cfr9I CCCGGG 1 cut(s) 583
CseI GACGC 1 cut(s) 331
CsiI ACCWGGT 1 cut(s) 95
Csp6I GTAC 1 cut(s) 661
CviAII CATG 5 cut(s) 39, 364, 533, 887, 929
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 6 cut(s) 8, 19, 204, 233, 759, 966
DpnI GATC 4 cut(s) 29, 455, 484, 774
DpnII GATC 4 cut(s) 27, 453, 482, 772
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
Eam1104I CTCTTC 2 cut(s) 282, 664
EarI CTCTTC 2 cut(s) 282, 664
Ecl136II GAGCTC 1 cut(s) 935
Eco130I CCWWGG 3 cut(s) 238, 258, 928
Eco24I GRGCYC 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 1 cut(s) 935
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 827
EcoRII CCWGG 2 cut(s) 95, 810
EcoT14I CCWWGG 3 cut(s) 238, 258, 928
EcoT38I GRGCYC 1 cut(s) 937
ErhI CCWWGG 3 cut(s) 238, 258, 928
FaeI CATG 5 cut(s) 42, 367, 536, 890, 932
FatI CATG 5 cut(s) 38, 363, 532, 886, 928
FauI CCCGC 2 cut(s) 427, 467
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 1 cut(s) 901
FokI GGATG 4 cut(s) 176, 380, 758, 851
FriOI GRGCYC 1 cut(s) 937
Fsp4HI GCNGC 1 cut(s) 901
FspBI CTAG 2 cut(s) 90, 416
GlaI GCGC 1 cut(s) 899
GluI GCNGC 1 cut(s) 901
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 263, 594
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 900
Hin1II CATG 5 cut(s) 42, 367, 536, 890, 932
Hin6I GCGC 1 cut(s) 898
HinP1I GCGC 1 cut(s) 898
HinfI GANTC 3 cut(s) 59, 377, 571
HpaII CCGG 1 cut(s) 584
HphI GGTGA 4 cut(s) 57, 126, 365, 932
Hpy188I TCNGA 4 cut(s) 27, 487, 564, 635
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 147, 736
HpyCH4III ACNGT 3 cut(s) 491, 665, 803
HpyCH4V TGCA 2 cut(s) 409, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 755, 821
HpyF3I CTNAG 6 cut(s) 8, 19, 204, 233, 759, 966
Hsp92II CATG 5 cut(s) 42, 367, 536, 890, 932
HspAI GCGC 1 cut(s) 898
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 4 cut(s) 27, 453, 482, 772
LguI GCTCTTC 2 cut(s) 282, 664
LmnI GCTCC 5 cut(s) 20, 28, 543, 932, 940
Lsp1109I GCAGC 1 cut(s) 912
LweI GCATC 4 cut(s) 541, 685, 736, 829
MabI ACCWGGT 1 cut(s) 95
MaeI CTAG 2 cut(s) 90, 416
MaeIII GTNAC 1 cut(s) 524
MalI GATC 4 cut(s) 29, 455, 484, 774
MboI GATC 4 cut(s) 27, 453, 482, 772
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 548, 937
MluCI AATT 3 cut(s) 763, 827, 919
MlyI GAGTC 2 cut(s) 53, 371
MseI TTAA 3 cut(s) 783, 882, 953
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 4 cut(s) 97, 584, 585, 812
MvaI CCWGG 2 cut(s) 97, 812
MwoI GCNNNNNNNGC 3 cut(s) 680, 755, 821
NciI CCSGG 2 cut(s) 584, 585
NcoI CCATGG 1 cut(s) 928
NdeI CATATG 1 cut(s) 820
NdeII GATC 4 cut(s) 27, 453, 482, 772
NlaIII CATG 5 cut(s) 42, 367, 536, 890, 932
PciSI GCTCTTC 2 cut(s) 282, 664
PfeI GAWTC 1 cut(s) 571
PkrI GCNGC 1 cut(s) 902
PleI GAGTC 2 cut(s) 53, 371
PpsI GAGTC 2 cut(s) 53, 371
Psp124BI GAGCTC 1 cut(s) 937
Psp6I CCWGG 2 cut(s) 95, 810
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 95, 810
PspPI GGNCC 1 cut(s) 631
PsuI RGATCY 1 cut(s) 453
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 937
SapI GCTCTTC 2 cut(s) 282, 664
SaqAI TTAA 3 cut(s) 783, 882, 953
SatI GCNGC 1 cut(s) 901
Sau3AI GATC 4 cut(s) 27, 453, 482, 772
Sau96I GGNCC 1 cut(s) 631
ScaI AGTACT 1 cut(s) 662
SchI GAGTC 2 cut(s) 53, 371
ScrFI CCNGG 4 cut(s) 97, 584, 585, 812
SduI GDGCHC 2 cut(s) 548, 937
SexAI ACCWGGT 1 cut(s) 95
SfaNI GCATC 4 cut(s) 541, 685, 736, 829
SinI GGWCC 1 cut(s) 631
SmaI CCCGGG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 3 cut(s) 763, 827, 919
SsiI CCGC 2 cut(s) 434, 474
SspMI CTAG 2 cut(s) 90, 416
SstI GAGCTC 1 cut(s) 937
StyD4I CCNGG 4 cut(s) 95, 582, 583, 810
StyI CCWWGG 3 cut(s) 238, 258, 928
TaaI ACNGT 3 cut(s) 491, 665, 803
TaqI TCGA 1 cut(s) 144
TasI AATT 3 cut(s) 763, 827, 919
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 1 cut(s) 571
Tru1I TTAA 3 cut(s) 783, 882, 953
Tru9I TTAA 3 cut(s) 783, 882, 953
TseI GCWGC 1 cut(s) 900
TspDTI ATGAA 5 cut(s) 303, 387, 807, 879, 903
TspMI CCCGGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 1 cut(s) 827
XmaI CCCGGG 1 cut(s) 583
XspI CTAG 2 cut(s) 90, 416
ZrmI AGTACT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.