RLG00000019480
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013935
Physical Location & Seq
Reverse (-)
52530238 .. 52531910
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019480

Sequence Viewer

Length: 972 bp
ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCCCACTCCAAAGACCCCCAACTAGAGCCAGAGCCAGTTCTCAATCTTCCTCGAACCAAGTCAGTCAACTTATCATCTTCTCTCCACACCCTCACCTTGGACCCAACAAAGAAAGCAACCCAATTCCTAGTCGAATCAGACCAACAAACCTCGCCAGTTAAGCCCCAAAAGAAAACCCCCATACCTCAAATCAAGAGAAAGCAATCTAAAAACAGAGCCAAAGAAGGTATGGAACAAGAAGAGGAACTAGAACCCATTACCATATCGTCATCATCATCTTCAACCCAAAGGCTGTTTTCAAGCTCTGGATTGGGTGAGAAACTCGTGGATGATGAAGCTTGCGGTGCAGGGAAGAAAGAGTGTGCGCTGCAGACACTGACGGTGGGTGGTGGTGTGGGAAACAATGGCGGTAAGATCTGTGGTGGTGGTGGAGGGAGGAAAGGATCGGACGGTGGAGATGAGTCTGGCTTCTCTGAGAGGAACAATAACCATGGGATTACTAATACTGATGCTTATTACCAGAGAATGATTCAAGCAGACCCCGGCAATCCACTCTTACTTAGCAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGACCATGATAAAGCGGAGGAGTACTGTGAGAGAGCAATTTTGGCTAATCCGAATGATGGCGATGTTTTATCAACATATGCTGATCTCATATGGAACACACAGAAGGATGCTCAACGAGCTGGGAATTATTTTGATCAAGCTGTTAAAGCTTCCCCAGATGATAGTTATGTCCTGGCTTCGTATGCTCGATTCCTGTGGGATGCTGAAGAAGATGAACAAGAAGATGAAGGAAATGAAAGGGTTCAACATGGAACTGATCAAAGCCACACATCTTCATCCAATTTCTACCACGGAGCTCATCAGCAATCTCCTATAACTGCAGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

324

Amino Acids

35.21

Weight (kDa)

5.2

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 180 - 227 3.7e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 387, 453, 656
AclWI GGATC 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 867
AfaI GTAC 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 142, 698
AgsI TTSAA 6 cut(s) 21, 34, 327, 345, 578, 887
AjnI CCWGG 1 cut(s) 813
AluBI AGCT 8 cut(s) 15, 348, 383, 761, 782, 791, 938, 965
AluI AGCT 8 cut(s) 15, 348, 383, 761, 782, 791, 938, 965
Alw21I GWGCWC 2 cut(s) 17, 940
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 412, 962
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 145, 634
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 2 cut(s) 130, 371
AvaII GGWCC 2 cut(s) 145, 634
BanII GRGCYC 2 cut(s) 17, 940
BauI CACGAG 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 17, 940
BbvI GCAGC 1 cut(s) 399
BccI CCATC 1 cut(s) 692
BciT130I CCWGG 1 cut(s) 815
BclI TGATCA 2 cut(s) 775, 898
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 3 cut(s) 68, 173, 293
BfmI CTRYAG 2 cut(s) 413, 960
BglII AGATCT 1 cut(s) 459
BisI GCNGC 2 cut(s) 413, 963
BlsI GCNGC 2 cut(s) 414, 964
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 2 cut(s) 588, 815
Bme18I GGWCC 2 cut(s) 145, 634
BmgT120I GGNCC 2 cut(s) 145, 634
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 588, 815
BmsI GCATC 3 cut(s) 544, 739, 832
BpuMI CCSGG 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 5 cut(s) 141, 535, 586, 637, 931
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 698
Bse1I ACTGG 2 cut(s) 80, 200
BseBI CCWGG 1 cut(s) 815
BseDI CCNNGG 5 cut(s) 141, 535, 586, 637, 931
BseGI GGATG 4 cut(s) 379, 754, 847, 917
BseLI CCNNNNNNNGG 2 cut(s) 142, 698
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 2 cut(s) 80, 200
BseRI GAGGAG 2 cut(s) 654, 674
BseXI GCAGC 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 761
BsgI GTGCAG 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 17, 940
BsiSI CCGG 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 142, 698
BsmAI GTCTC 1 cut(s) 636
Bso31I GGTCTC 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 17, 940
Bsp143I GATC 5 cut(s) 459, 488, 724, 775, 898
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 3 cut(s) 387, 453, 656
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 2 cut(s) 417, 964
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 636
BsrI ACTGG 2 cut(s) 80, 200
BssECI CCNNGG 5 cut(s) 141, 535, 586, 637, 931
BssMI GATC 5 cut(s) 459, 488, 724, 775, 898
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 2 cut(s) 141, 535
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 3 cut(s) 427, 497, 668
Bst6I CTCTTC 2 cut(s) 22, 279
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 3 cut(s) 8, 519, 605
BstDSI CCRYGG 2 cut(s) 535, 931
BstF5I GGATG 4 cut(s) 379, 754, 847, 917
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 5 cut(s) 462, 491, 727, 778, 901
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 5 cut(s) 459, 488, 724, 775, 898
BstMWI GCNNNNNNNGC 6 cut(s) 205, 389, 683, 758, 788, 824
BstNI CCWGG 1 cut(s) 815
BstSCI CCNGG 2 cut(s) 586, 813
BstSFI CTRYAG 2 cut(s) 413, 960
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 459
BstYI RGATCY 1 cut(s) 459
BtgI CCRYGG 2 cut(s) 535, 931
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 4 cut(s) 379, 754, 847, 917
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 145, 634
Csp6I GTAC 1 cut(s) 664
CviAII CATG 4 cut(s) 39, 536, 647, 890
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 3 cut(s) 8, 519, 605
DpnI GATC 5 cut(s) 461, 490, 726, 777, 900
DpnII GATC 5 cut(s) 459, 488, 724, 775, 898
Eam1104I CTCTTC 2 cut(s) 22, 279
EarI CTCTTC 2 cut(s) 22, 279
Ecl136II GAGCTC 2 cut(s) 15, 938
Eco130I CCWWGG 2 cut(s) 141, 535
Eco24I GRGCYC 2 cut(s) 17, 940
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 145, 634
Eco53kI GAGCTC 2 cut(s) 15, 938
Eco57I CTGAAG 1 cut(s) 867
EcoICRI GAGCTC 2 cut(s) 15, 938
EcoRII CCWGG 1 cut(s) 813
EcoT14I CCWWGG 2 cut(s) 141, 535
EcoT38I GRGCYC 2 cut(s) 17, 940
ErhI CCWWGG 2 cut(s) 141, 535
FaeI CATG 4 cut(s) 42, 539, 650, 893
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 4 cut(s) 38, 535, 646, 889
FauNDI CATATG 2 cut(s) 718, 731
FbaI TGATCA 2 cut(s) 775, 898
Fnu4HI GCNGC 2 cut(s) 413, 963
FokI GGATG 4 cut(s) 386, 761, 854, 904
FriOI GRGCYC 2 cut(s) 17, 940
Fsp4HI GCNGC 2 cut(s) 413, 963
FspBI CTAG 3 cut(s) 68, 173, 293
GlaI GCGC 1 cut(s) 411
GluI GCNGC 2 cut(s) 413, 963
GsaI CCCAGC 1 cut(s) 765
HapII CCGG 1 cut(s) 588
HhaI GCGC 1 cut(s) 412
Hin1II CATG 4 cut(s) 42, 539, 650, 893
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 381, 789
HinfI GANTC 4 cut(s) 179, 506, 574, 831
HpaII CCGG 1 cut(s) 588
HphI GGTGA 2 cut(s) 130, 371
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 184, 493, 520, 638, 693
Hpy188III TCNNGA 3 cut(s) 31, 238, 351
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 263, 739, 863
HpyCH4III ACNGT 3 cut(s) 427, 497, 668
HpyCH4V TGCA 4 cut(s) 392, 415, 617, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 205, 389, 683, 758, 788, 824
HpyF3I CTNAG 3 cut(s) 8, 519, 605
Hsp92II CATG 4 cut(s) 42, 539, 650, 893
HspAI GCGC 1 cut(s) 410
Ksp22I TGATCA 2 cut(s) 775, 898
Kzo9I GATC 5 cut(s) 459, 488, 724, 775, 898
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 12, 935
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 3 cut(s) 544, 739, 832
MaeI CTAG 3 cut(s) 68, 173, 293
MalI GATC 5 cut(s) 461, 490, 726, 777, 900
MboI GATC 5 cut(s) 459, 488, 724, 775, 898
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 17, 940
MluCI AATT 4 cut(s) 167, 678, 766, 922
MlyI GAGTC 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 3 cut(s) 204, 786, 970
MspI CCGG 1 cut(s) 588
MspR9I CCNGG 2 cut(s) 588, 815
MvaI CCWGG 1 cut(s) 815
MwoI GCNNNNNNNGC 6 cut(s) 205, 389, 683, 758, 788, 824
NciI CCSGG 1 cut(s) 588
NcoI CCATGG 1 cut(s) 535
NdeI CATATG 2 cut(s) 718, 731
NdeII GATC 5 cut(s) 459, 488, 724, 775, 898
NlaIII CATG 4 cut(s) 42, 539, 650, 893
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 3 cut(s) 179, 574, 831
PkrI GCNGC 2 cut(s) 414, 964
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Psp124BI GAGCTC 2 cut(s) 17, 940
Psp6I CCWGG 1 cut(s) 813
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 145, 634
PstI CTGCAG 2 cut(s) 417, 964
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
SacI GAGCTC 2 cut(s) 17, 940
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 204, 786, 970
SatI GCNGC 2 cut(s) 413, 963
Sau3AI GATC 5 cut(s) 459, 488, 724, 775, 898
Sau96I GGNCC 2 cut(s) 145, 634
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 588, 815
SduI GDGCHC 2 cut(s) 17, 940
SfaNI GCATC 3 cut(s) 544, 739, 832
SfcI CTRYAG 2 cut(s) 413, 960
SinI GGWCC 2 cut(s) 145, 634
Sse9I AATT 4 cut(s) 167, 678, 766, 922
SsiI CCGC 3 cut(s) 387, 453, 656
SspMI CTAG 3 cut(s) 68, 173, 293
SstI GAGCTC 2 cut(s) 17, 940
StyD4I CCNGG 2 cut(s) 586, 813
StyI CCWWGG 2 cut(s) 141, 535
TaaI ACNGT 3 cut(s) 427, 497, 668
TaqI TCGA 3 cut(s) 97, 177, 829
TasI AATT 4 cut(s) 167, 678, 766, 922
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 3 cut(s) 179, 574, 831
Tru1I TTAA 3 cut(s) 204, 786, 970
Tru9I TTAA 3 cut(s) 204, 786, 970
TscAI CASTG 1 cut(s) 426
TseI GCWGC 2 cut(s) 412, 962
TspDTI ATGAA 5 cut(s) 393, 870, 882, 891, 906
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 1 cut(s) 426
VpaK11BI GGWCC 2 cut(s) 145, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 3 cut(s) 68, 173, 293
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.