FvH4_6g29850
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013935
Physical Location & Seq
Reverse (-)
23061886 .. 23064356
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29850.t1

Sequence Viewer

Length: 966 bp
ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCTCACTCCAAAGACACCCAACCAGAGCCAGAGCCACTTCTTAATCTTCCTAGAACCAGGTCAGTCAACTTATCATCTTCTCTCCACTCCCCCACTTTTGACCCAACAAGGAAACCATCCCAGTTCCTAGTTGAATCAGACATCCAAACCTCTCCAGTTAAGCCCCAAAAGAAAACCCCCATACCACAAATCAAGACAAAGAAATCCAAAACCAGAGCCAAAAGTATGGAACAAGAAGAACTAAAACCCATTACCATATCATCTTCATCTTCTTCTTCAACCCAGAGGCTGTTTTCAAGCTCTGGATTGGATGGGAAACTCGTGGATGACGAAGCTTGTGGTGCAGGGAAGGAAGAGAGTGCGCTGCAGACACTGACGGTGGGTGGTGTGGGAAATAATGGCGGTAAGATCTGTGGTGGTGGTGGAGGGAGGAAAGGATCGGACGGTGGAGACGAGTCTGGTTTCTCTGAGAGTAACAATAATCGTGGGATTGATAGTACCGATGCTTATTACCGGACAATGATCCAAGCAGACCCGAGCAATCCACTCTTACTCAGCAACTATGCAAAGTTTCTAAAAGAGGTTCGAGGAGACTATGGTAAAGCTGAGGAGTACTGTGAGAGAGCAATTTTGGCTAGTCCGAGTGATGCTGATGTTTTATCAACATATGCTGATCTGATATGGAACACACAGAAGGATGCTCAACGAGCTGAGAATTATTTTGACCAAGCTGTTAAAGCTTCCCCAGATGATAGTTATGTCCTGGCTTCATATGCTCGATTCCTGTGGGATGCTGAAGAAGATGAAGAAGAAGATGAAGGAAATGAAAGAGTTCAACATGGAACTGATCAAAGCCACACATCTTCATCCAATTTCTACCATGGAGCTCATCAGCATTCTCCTTTAACTGCAGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

322

Amino Acids

34.92

Weight (kDa)

5.12

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 447
AclWI GGATC 2 cut(s) 490, 562
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 2 cut(s) 544, 659
AgsI TTSAA 6 cut(s) 21, 34, 179, 324, 342, 881
AjnI CCWGG 2 cut(s) 101, 807
AluBI AGCT 9 cut(s) 15, 345, 380, 650, 755, 776, 785, 932, 959
AluI AGCT 9 cut(s) 15, 345, 380, 650, 755, 776, 785, 932, 959
Alw21I GWGCWC 2 cut(s) 17, 934
Alw26I GTCTC 2 cut(s) 489, 630
AlwI GGATC 2 cut(s) 490, 562
AlwNI CAGNNNCTG 2 cut(s) 334, 418
Ama87I CYCGRG 1 cut(s) 580
ApeKI GCWGC 2 cut(s) 409, 956
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 580
BanII GRGCYC 2 cut(s) 17, 934
BauI CACGAG 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 17, 934
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 396
BccI CCATC 2 cut(s) 169, 350
BciT130I CCWGG 2 cut(s) 103, 809
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 489, 630
BfaI CTAG 3 cut(s) 96, 173, 681
BfmI CTRYAG 2 cut(s) 410, 954
BglII AGATCT 1 cut(s) 453
BisI GCNGC 2 cut(s) 410, 957
BlsI GCNGC 2 cut(s) 411, 958
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 2 cut(s) 103, 809
BmeT110I CYCGRG 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 103, 809
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 4 cut(s) 538, 682, 733, 826
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 925
BsaWI WCCGGW 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 166, 200
BseBI CCWGG 2 cut(s) 103, 809
BseDI CCNNGG 1 cut(s) 925
BseGI GGATG 7 cut(s) 161, 186, 361, 376, 748, 841, 911
BseMII CTCAG 4 cut(s) 504, 613, 642, 747
BseNI ACTGG 2 cut(s) 166, 200
BseRI GAGGAG 2 cut(s) 648, 668
BseXI GCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 17, 934
BsiHKCI CYCGRG 1 cut(s) 580
BsiSI CCGG 1 cut(s) 559
BsmAI GTCTC 2 cut(s) 489, 630
BsmBI CGTCTC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 940
BsoBI CYCGRG 1 cut(s) 580
Bsp1286I GDGCHC 2 cut(s) 17, 934
Bsp143I GATC 5 cut(s) 453, 482, 567, 718, 892
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 1 cut(s) 447
BspCNI CTCAG 4 cut(s) 505, 612, 643, 748
BspMAI CTGCAG 2 cut(s) 414, 958
BspPI GGATC 2 cut(s) 490, 562
BspQI GCTCTTC 1 cut(s) 22
BsrI ACTGG 2 cut(s) 166, 200
BssECI CCNNGG 1 cut(s) 925
BssMI GATC 5 cut(s) 453, 482, 567, 718, 892
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 103, 809
Bst4CI ACNGT 3 cut(s) 424, 491, 662
Bst6I CTCTTC 2 cut(s) 22, 393
BstDEI CTNAG 5 cut(s) 8, 513, 599, 651, 756
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 7 cut(s) 161, 186, 361, 376, 748, 841, 911
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 456, 485, 570, 721, 895
BstMAI GTCTC 2 cut(s) 489, 630
BstMBI GATC 5 cut(s) 453, 482, 567, 718, 892
BstMWI GCNNNNNNNGC 5 cut(s) 386, 677, 752, 782, 818
BstNI CCWGG 2 cut(s) 103, 809
BstSCI CCNGG 2 cut(s) 101, 807
BstSFI CTRYAG 2 cut(s) 410, 954
BstV1I GCAGC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 7 cut(s) 161, 186, 361, 376, 748, 841, 911
BtsIMutI CAGTG 1 cut(s) 416
CaiI CAGNNNCTG 2 cut(s) 334, 418
CfoI GCGC 1 cut(s) 409
CsiI ACCWGGT 1 cut(s) 101
Csp6I GTAC 2 cut(s) 543, 658
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 3 cut(s) 39, 884, 926
CviQI GTAC 2 cut(s) 543, 658
DdeI CTNAG 5 cut(s) 8, 513, 599, 651, 756
DpnI GATC 5 cut(s) 455, 484, 569, 720, 894
DpnII GATC 5 cut(s) 453, 482, 567, 718, 892
Eam1104I CTCTTC 2 cut(s) 22, 393
EarI CTCTTC 2 cut(s) 22, 393
Ecl136II GAGCTC 2 cut(s) 15, 932
Eco130I CCWWGG 1 cut(s) 925
Eco24I GRGCYC 2 cut(s) 17, 934
Eco53kI GAGCTC 2 cut(s) 15, 932
Eco57I CTGAAG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 580
EcoICRI GAGCTC 2 cut(s) 15, 932
EcoRII CCWGG 2 cut(s) 101, 807
EcoT14I CCWWGG 1 cut(s) 925
EcoT38I GRGCYC 2 cut(s) 17, 934
ErhI CCWWGG 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 3 cut(s) 42, 887, 929
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 3 cut(s) 38, 883, 925
FauNDI CATATG 2 cut(s) 712, 817
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 2 cut(s) 410, 957
FokI GGATG 7 cut(s) 148, 173, 368, 383, 755, 848, 898
FriOI GRGCYC 2 cut(s) 17, 934
Fsp4HI GCNGC 2 cut(s) 410, 957
FspBI CTAG 3 cut(s) 96, 173, 681
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 410, 957
GsuI CTGGAG 1 cut(s) 183
HapII CCGG 1 cut(s) 559
HhaI GCGC 1 cut(s) 409
Hin1II CATG 3 cut(s) 42, 887, 929
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 378, 783
HinfI GANTC 3 cut(s) 179, 500, 825
HpaII CCGG 1 cut(s) 559
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 184, 487, 514, 687, 723
Hpy188III TCNNGA 3 cut(s) 31, 238, 348
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 388, 733, 857
HpyCH4III ACNGT 3 cut(s) 424, 491, 662
HpyCH4V TGCA 4 cut(s) 389, 412, 611, 956
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 677, 752, 782, 818
HpyF3I CTNAG 5 cut(s) 8, 513, 599, 651, 756
Hsp92II CATG 3 cut(s) 42, 887, 929
HspAI GCGC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 5 cut(s) 453, 482, 567, 718, 892
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 12, 929
Lsp1109I GCAGC 1 cut(s) 396
LweI GCATC 4 cut(s) 538, 682, 733, 826
MabI ACCWGGT 1 cut(s) 101
MaeI CTAG 3 cut(s) 96, 173, 681
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 455, 484, 569, 720, 894
MboI GATC 5 cut(s) 453, 482, 567, 718, 892
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 17, 934
MluCI AATT 3 cut(s) 672, 760, 916
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 7 cut(s) 205, 324, 464, 468, 619, 626, 646
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 5 cut(s) 87, 204, 780, 950, 964
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 2 cut(s) 103, 809
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 2 cut(s) 103, 809
MwoI GCNNNNNNNGC 5 cut(s) 386, 677, 752, 782, 818
NcoI CCATGG 1 cut(s) 925
NdeI CATATG 2 cut(s) 712, 817
NdeII GATC 5 cut(s) 453, 482, 567, 718, 892
NlaIII CATG 3 cut(s) 42, 887, 929
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 495
PctI GAATGC 1 cut(s) 940
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 2 cut(s) 179, 825
PkrI GCNGC 2 cut(s) 411, 958
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp124BI GAGCTC 2 cut(s) 17, 934
Psp6I CCWGG 2 cut(s) 101, 807
PspGI CCWGG 2 cut(s) 101, 807
PstI CTGCAG 2 cut(s) 414, 958
PstNI CAGNNNCTG 2 cut(s) 334, 418
PsuI RGATCY 1 cut(s) 453
RsaI GTAC 2 cut(s) 544, 659
RsaNI GTAC 2 cut(s) 543, 658
SacI GAGCTC 2 cut(s) 17, 934
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 5 cut(s) 87, 204, 780, 950, 964
SatI GCNGC 2 cut(s) 410, 957
Sau3AI GATC 5 cut(s) 453, 482, 567, 718, 892
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 103, 809
SduI GDGCHC 2 cut(s) 17, 934
SexAI ACCWGGT 1 cut(s) 101
SfaNI GCATC 4 cut(s) 538, 682, 733, 826
SfcI CTRYAG 2 cut(s) 410, 954
Sse9I AATT 3 cut(s) 672, 760, 916
SsiI CCGC 1 cut(s) 447
SspMI CTAG 3 cut(s) 96, 173, 681
SstI GAGCTC 2 cut(s) 17, 934
StyD4I CCNGG 2 cut(s) 101, 807
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 3 cut(s) 424, 491, 662
TaqI TCGA 2 cut(s) 631, 823
TasI AATT 3 cut(s) 672, 760, 916
TatI WGTACW 1 cut(s) 657
TfiI GAWTC 2 cut(s) 179, 825
Tru1I TTAA 5 cut(s) 87, 204, 780, 950, 964
Tru9I TTAA 5 cut(s) 87, 204, 780, 950, 964
TscAI CASTG 1 cut(s) 423
TseI GCWGC 2 cut(s) 409, 956
TspDTI ATGAA 6 cut(s) 300, 804, 864, 876, 885, 900
TspRI CASTG 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 3 cut(s) 96, 173, 681
ZrmI AGTACT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.