AT1G80450

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013553
Physical Location & Seq
Reverse (-)
30243430 .. 30244949
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80450.1

Sequence Viewer

Length: 534 bp
ATGAGTCACCAGCAGCCGCCGAGCTATGCCACCGAGCCAAACACCATGTTCGTTCAAGCAGACCCCTCTAATTTCCGTAACATCGTCCAAAAGCTCACTGGAGCACCACCCGATATCTCCTCCTCATCCTTCTCCGCCGTCTCAGCCGCACACCAGAAGCTTCCATTAACTCCCAAAAAGCCAGCGTTCAAACTCCACGAACGGCGTCAATCATCAAAGAAAATGGAGCTTAAGGTCAACAACATCACAAACCCTAACGACGCTTTCAGCCATTTCCACCGAGGATTCCTCGTCTCTCCCGTCTCTCACCTAGACCCATTCTGGGCGCGCGTGAGTCCACATTCAGCGCGTGAGGAACACCACGCGCAACCGGACAAGGAAGAGCAAAAAGCCATAGCGGAAAAAGGGTTCTACTTCCTTCCGAGTCCGAGAAGCGGCTCCGAGCCGGCACCGGAGCTTTTGCCCCTGTTTCCTCTTCGTTCTCCTAACGGCACTAATCACCGGATTCATGAAGATAATCATCGAGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

9.26

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 13 - 37 1.1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 448
AccII CGCG 4 cut(s) 328, 330, 349, 365
AciI CCGC 5 cut(s) 17, 135, 147, 398, 435
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 322, 434
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 56, 190
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 5 cut(s) 24, 94, 160, 229, 457
AluI AGCT 5 cut(s) 24, 94, 160, 229, 457
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 4 cut(s) 145, 298, 307, 519
ApeKI GCWGC 1 cut(s) 13
AspLEI GCGC 4 cut(s) 328, 330, 349, 367
AsuHPI GGTGA 2 cut(s) 299, 491
BanI GGYRCC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 25
BceAI ACGGC 3 cut(s) 122, 218, 505
BcoDI GTCTC 4 cut(s) 145, 298, 307, 519
BfaI CTAG 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 230
BisI GCNGC 4 cut(s) 14, 17, 147, 436
BlsI GCNGC 4 cut(s) 15, 18, 148, 437
BmiI GGNNCC 2 cut(s) 439, 450
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpmI CTGGAG 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 3 cut(s) 370, 451, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 434
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 322, 434
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 103
BsePI GCGCGC 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 109, 112
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 4 cut(s) 328, 330, 349, 365
BshNI GGYRCC 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 4 cut(s) 371, 446, 452, 502
BslI CCNNNNNNNGG 2 cut(s) 322, 434
BsmAI GTCTC 4 cut(s) 145, 298, 307, 519
BsmBI CGTCTC 3 cut(s) 145, 298, 307
Bsp1286I GDGCHC 1 cut(s) 106
BspACI CCGC 5 cut(s) 17, 135, 147, 398, 435
BspCNI CTCAG 1 cut(s) 155
BspFNI CGCG 4 cut(s) 328, 330, 349, 365
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 439, 450
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 448
BspTI CTTAAG 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 280
BssHII GCGCGC 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 205
Bst6I CTCTTC 2 cut(s) 375, 480
BstACI GRCGYC 1 cut(s) 205
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 183, 328, 447
BstDEI CTNAG 2 cut(s) 142, 531
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 4 cut(s) 328, 330, 349, 365
BstHHI GCGC 4 cut(s) 328, 330, 349, 367
BstMAI GTCTC 4 cut(s) 145, 298, 307, 519
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstUI CGCG 4 cut(s) 328, 330, 349, 365
BstV1I GCAGC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 183, 328, 447
CciI TCATGA 1 cut(s) 508
CfoI GCGC 4 cut(s) 328, 330, 349, 367
Cfr10I RCCGGY 1 cut(s) 445
CseI GACGC 2 cut(s) 194, 269
CviAII CATG 2 cut(s) 46, 509
DdeI CTNAG 2 cut(s) 142, 531
Eam1104I CTCTTC 2 cut(s) 375, 480
EarI CTCTTC 2 cut(s) 375, 480
EciI GGCGGA 1 cut(s) 124
Eco32I GATATC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 115
Esp3I CGTCTC 3 cut(s) 145, 298, 307
FaeI CATG 2 cut(s) 49, 512
FaiI YATR 4 cut(s) 27, 47, 395, 510
FatI CATG 2 cut(s) 45, 508
Fnu4HI GCNGC 4 cut(s) 14, 17, 147, 436
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 14, 17, 147, 436
FspBI CTAG 1 cut(s) 311
GlaI GCGC 4 cut(s) 327, 329, 348, 366
GluI GCNGC 4 cut(s) 14, 17, 147, 436
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 4 cut(s) 371, 446, 452, 502
HgaI GACGC 2 cut(s) 194, 269
HhaI GCGC 4 cut(s) 328, 330, 349, 367
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 49, 512
Hin6I GCGC 4 cut(s) 326, 328, 347, 365
HinP1I GCGC 4 cut(s) 326, 328, 347, 365
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 4, 285, 334, 424, 505, 527
HpaII CCGG 4 cut(s) 371, 446, 452, 502
HphI GGTGA 2 cut(s) 299, 491
Hpy166II GTNNAC 2 cut(s) 238, 338
Hpy188I TCNGA 3 cut(s) 423, 429, 442
Hpy188III TCNNGA 2 cut(s) 509, 524
Hpy8I GTNNAC 2 cut(s) 238, 338
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 139, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 142, 531
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 49, 512
HspAI GCGC 4 cut(s) 326, 328, 347, 365
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 4 cut(s) 101, 226, 443, 454
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 5, 77
MboII GAAGA 3 cut(s) 392, 467, 524
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 70
MlyI GAGTC 4 cut(s) 13, 343, 433, 521
MnlI CCTC 7 cut(s) 76, 130, 133, 275, 299, 346, 483
MroNI GCCGGC 1 cut(s) 445
MseI TTAA 2 cut(s) 167, 231
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 4 cut(s) 371, 446, 452, 502
MvnI CGCG 4 cut(s) 328, 330, 349, 365
MwoI GCNNNNNNNGC 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 447
NgoMIV GCCGGC 1 cut(s) 445
NlaIII CATG 2 cut(s) 49, 512
NlaIV GGNNCC 2 cut(s) 439, 450
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 5
PagI TCATGA 1 cut(s) 508
PauI GCGCGC 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 285, 505
PkrI GCNGC 4 cut(s) 15, 18, 148, 437
PleI GAGTC 4 cut(s) 12, 342, 432, 521
PpsI GAGTC 4 cut(s) 12, 342, 432, 521
PspN4I GGNNCC 2 cut(s) 439, 450
PteI GCGCGC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 167, 231
SatI GCNGC 4 cut(s) 14, 17, 147, 436
SchI GAGTC 4 cut(s) 13, 343, 433, 521
SduI GDGCHC 1 cut(s) 106
SetI ASST 7 cut(s) 26, 96, 162, 231, 237, 312, 459
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 70
SsiI CCGC 5 cut(s) 17, 135, 147, 398, 435
SspMI CTAG 1 cut(s) 311
TaqI TCGA 1 cut(s) 523
TasI AATT 1 cut(s) 70
TauI GCSGC 3 cut(s) 19, 149, 438
TfiI GAWTC 2 cut(s) 285, 505
Tru1I TTAA 2 cut(s) 167, 231
Tru9I TTAA 2 cut(s) 167, 231
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 497, 525
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 103
Vha464I CTTAAG 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.