MD08G1052300.v1.1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013553
Physical Location & Seq
Forward (+)
4100078 .. 4100623
546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1052300.v1.1.491

Sequence Viewer

Length: 546 bp
ATGGAAAGACATCATCACTCACAACAAAGCAACAGCAACCTCTGCTCGCCAACATCGCCACCCACGACCTTTGTTCAGGCAGACACAAACAACTTCAGAGACCTCGTCCAGAAGCTGACAGGCTTATCCGGGGACTCGGAAAAACTCCCCATCACACACCCAGCAAGGCACTACCCTAAAGCACCCACAAGTCCCGGTGACCCCACCGGCCCTCGCCGGTCACCGTTCAAGCTGCAAGAGCGAAGACACACCATGAGAAAACTCGAGATTAAGCTTAGTCTCGCAACCCTACACGGCTCTCAGCCGTTTCCGAGTCCCGTCACCCCACTCGGGTTCGAGTCGTTTTCATTCCCGAGTTCTGGTTCCGAGTCGCCGTCGTCTCCAGCAGCGGTGGCCGAGGAGGAGAAGGCAATTGCGGAGAAGGGGTTTTATTTGCACCCTTCGCCGCTCAATACTCCCAGAGGGGCCGAGCCGCCCGAGTTGCTACCCCTGTTTCCGCTGAGTTCACCCAGTAATAGTGATCACAAGTCTCTGCAGTCACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

182

Amino Acids

19.72

Weight (kDa)

7.98

Isoelectric Point (pI)

88.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 20 - 45 1.5e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 448
AciI CCGC 5 cut(s) 389, 416, 446, 473, 497
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 330, 359
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 3 cut(s) 115, 232, 274
AluI AGCT 3 cut(s) 115, 232, 274
Alw26I GTCTC 4 cut(s) 93, 284, 384, 534
AlwNI CAGNNNCTG 1 cut(s) 115
Ama87I CYCGRG 4 cut(s) 263, 329, 352, 476
AoxI GGCC 3 cut(s) 208, 393, 465
ApeKI GCWGC 2 cut(s) 232, 386
AspS9I GGNCC 2 cut(s) 209, 465
AsuC2I CCSGG 2 cut(s) 130, 195
AsuHPI GGTGA 5 cut(s) 209, 213, 313, 498, 531
AvaI CYCGRG 4 cut(s) 263, 329, 352, 476
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 219, 398
BccI CCATC 1 cut(s) 158
BceAI ACGGC 3 cut(s) 289, 310, 358
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 130, 195
BcoDI GTCTC 4 cut(s) 93, 284, 384, 534
BfmI CTRYAG 1 cut(s) 533
BisI GCNGC 4 cut(s) 233, 387, 446, 473
BlsI GCNGC 4 cut(s) 234, 388, 447, 474
Bme1390I CCNGG 2 cut(s) 130, 195
BmeT110I CYCGRG 4 cut(s) 263, 329, 352, 476
BmgT120I GGNCC 2 cut(s) 209, 465
BmiI GGNNCC 2 cut(s) 364, 466
BmrFI CCNGG 2 cut(s) 130, 195
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 130, 195
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 129, 396
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 359
Bse118I RCCGGY 2 cut(s) 206, 216
Bse1I ACTGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 129, 396
BseLI CCNNNNNNNGG 2 cut(s) 330, 359
BseMII CTCAG 2 cut(s) 314, 491
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 2 cut(s) 413, 416
BseXI GCAGC 2 cut(s) 219, 398
BseYI CCCAGC 1 cut(s) 160
BshFI GGCC 3 cut(s) 210, 395, 467
BsiHKCI CYCGRG 4 cut(s) 263, 329, 352, 476
BsiSI CCGG 4 cut(s) 129, 195, 207, 217
BslFI GGGAC 3 cut(s) 146, 177, 300
BslI CCNNNNNNNGG 2 cut(s) 330, 359
BsmAI GTCTC 4 cut(s) 93, 284, 384, 534
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 3 cut(s) 146, 177, 300
BsnI GGCC 3 cut(s) 210, 395, 467
Bso31I GGTCTC 1 cut(s) 93
BsoBI CYCGRG 4 cut(s) 263, 329, 352, 476
Bsp143I GATC 1 cut(s) 520
BspACI CCGC 5 cut(s) 389, 416, 446, 473, 497
BspANI GGCC 3 cut(s) 210, 395, 467
BspCNI CTCAG 2 cut(s) 313, 492
BspLI GGNNCC 2 cut(s) 364, 466
BspMAI CTGCAG 1 cut(s) 537
BspTNI GGTCTC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 448
BsrFI RCCGGY 2 cut(s) 206, 216
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 2 cut(s) 206, 216
BssECI CCNNGG 2 cut(s) 129, 396
BssMI GATC 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 275, 300, 500
BstEII GGTNACC 2 cut(s) 197, 219
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 4 cut(s) 93, 284, 384, 534
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 6 cut(s) 42, 55, 238, 392, 442, 481
BstPI GGTNACC 2 cut(s) 197, 219
BstSCI CCNGG 2 cut(s) 128, 193
BstSFI CTRYAG 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 219, 398
BstV2I GAAGAC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 210, 395, 467
BtgZI GCGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 47
CaiI CAGNNNCTG 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 206, 216
Cfr13I GGNCC 2 cut(s) 209, 465
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 1 cut(s) 253
DdeI CTNAG 3 cut(s) 275, 300, 500
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 79
Eco88I CYCGRG 4 cut(s) 263, 329, 352, 476
Eco91I GGTNACC 2 cut(s) 197, 219
EcoO65I GGTNACC 2 cut(s) 197, 219
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FaqI GGGAC 3 cut(s) 146, 177, 300
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 233, 387, 446, 473
Fsp4HI GCNGC 4 cut(s) 233, 387, 446, 473
GluI GCNGC 4 cut(s) 233, 387, 446, 473
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 3 cut(s) 210, 395, 467
HapII CCGG 4 cut(s) 129, 195, 207, 217
Hin1II CATG 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 4 cut(s) 134, 313, 338, 368
HpaII CCGG 4 cut(s) 129, 195, 207, 217
HphI GGTGA 5 cut(s) 209, 213, 313, 498, 531
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 4 cut(s) 98, 139, 312, 367
Hpy188III TCNNGA 3 cut(s) 109, 265, 352
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 3 cut(s) 400, 415, 450
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 235, 436, 535
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 55, 238, 392, 442, 481
HpyF3I CTNAG 3 cut(s) 275, 300, 500
Hsp92II CATG 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 1 cut(s) 520
Lsp1109I GCAGC 2 cut(s) 219, 398
MaeIII GTNAC 4 cut(s) 197, 219, 319, 537
MalI GATC 1 cut(s) 522
MbiI CCGCTC 1 cut(s) 448
MboI GATC 1 cut(s) 520
MboII GAAGA 1 cut(s) 255
MfeI CAATTG 1 cut(s) 411
MluCI AATT 1 cut(s) 411
MlyI GAGTC 4 cut(s) 128, 322, 347, 377
MnlI CCTC 6 cut(s) 50, 113, 222, 391, 394, 455
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 2 cut(s) 389, 499
MspI CCGG 4 cut(s) 129, 195, 207, 217
MspR9I CCNGG 2 cut(s) 130, 195
MunI CAATTG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 42, 55, 238, 392, 442, 481
NciI CCSGG 2 cut(s) 130, 195
NdeII GATC 1 cut(s) 520
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 364, 466
NmeAIII GCCGAG 2 cut(s) 421, 493
NmuCI GTSAC 4 cut(s) 197, 219, 319, 537
PaeR7I CTCGAG 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 4 cut(s) 234, 388, 447, 474
PleI GAGTC 4 cut(s) 128, 321, 346, 376
PpsI GAGTC 4 cut(s) 128, 321, 346, 376
PspEI GGTNACC 2 cut(s) 197, 219
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 364, 466
PspPI GGNCC 2 cut(s) 209, 465
PstI CTGCAG 1 cut(s) 537
PstNI CAGNNNCTG 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 4 cut(s) 233, 387, 446, 473
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 2 cut(s) 209, 465
SchI GAGTC 4 cut(s) 128, 322, 347, 377
ScrFI CCNGG 2 cut(s) 130, 195
SetI ASST 6 cut(s) 42, 71, 105, 117, 234, 276
SfcI CTRYAG 1 cut(s) 533
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 411
SsiI CCGC 5 cut(s) 389, 416, 446, 473, 497
StyD4I CCNGG 2 cut(s) 128, 193
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 264, 336
TasI AATT 1 cut(s) 411
TauI GCSGC 2 cut(s) 448, 475
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 4 cut(s) 197, 219, 319, 537
TseI GCWGC 2 cut(s) 232, 386
Tsp45I GTSAC 4 cut(s) 197, 219, 319, 537
TspDTI ATGAA 1 cut(s) 336
Tth111I GACNNNGTC 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.