Prupe.1G396600_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013553
Physical Location & Seq
Reverse (-)
35157071 .. 35159007
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G396600.1

Sequence Viewer

Length: 696 bp
ATGGAAAAACATCACCCACCACAAAGCACCAACCTTTGCTCACCAACATCTTCTCCCACAACCTTTGTCCAAGCAGACACAAACACCTTCCGAGACCTAGTACAGAAGCTGACTGGTTTATCCGGTGACTCAGAGAAGCTCCCAGTCACCCACCCCACGAGGCACTACCCAAAGGCACCCACAATTCCCGGTGACCCAACCGGCCCCCGCCGGTCACCGTTCAAGCTCCAAGAGCGAAGACACACCATGAGGAAGCTCGAGATCAAGCTCAGCCTCGCCAACCTCCATGGCTCCCAGTCGCAGACCCCGCGCCAAACCTACCAGCTCCTCGACTCGCCGATTCCGAGCCCCGTCACCCCACTCGGCTCTGACTCTCTCTTCTTCCCGAGTTCCGGGTCCGAGTCACCGTCATCTCCGGCGGCGGCGGCGTCTGAGGAAGAGAAGGCGATTGCCGAGAAAGGGTTTTATTTGCACCCTTCCCCACTCAGCACGCCGAGAGGATCAGACCCGCCCGAGTTACTGACCCTGTTTCCGCTGAGCTCCCCCGGTCACCATGATAACAAATTACGGCGAGAAGAAGATATCGGCGGTGCGGTCTGCATGGCTTCTTTGATTCACATGGAAAAGTCTTTTGGTGGTTCCCATTGTTTTGCGAAGCGTGATGGCGTGGCCGTATTTGAGTGGTTGGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

232

Amino Acids

25.27

Weight (kDa)

7.19

Isoelectric Point (pI)

75.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 1 cut(s) 310
AciI CCGC 9 cut(s) 208, 308, 419, 422, 425, 509, 533, 588, 593
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 392, 459
AgsI TTSAA 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 7 cut(s) 109, 139, 226, 256, 268, 325, 540
AluI AGCT 7 cut(s) 109, 139, 226, 256, 268, 325, 540
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 508
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 3 cut(s) 257, 385, 512
AoxI GGCC 2 cut(s) 202, 669
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 203, 396
AsuC2I CCSGG 3 cut(s) 189, 394, 546
AsuHPI GGTGA 9 cut(s) 5, 33, 137, 139, 203, 207, 346, 396, 542
AvaI CYCGRG 3 cut(s) 257, 385, 512
AvaII GGWCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 350, 542
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 542
BccI CCATC 1 cut(s) 656
BceAI ACGGC 2 cut(s) 584, 656
BcnI CCSGG 3 cut(s) 189, 394, 546
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 98
BisI GCNGC 3 cut(s) 420, 423, 426
BlpI GCTNAGC 2 cut(s) 269, 536
BlsI GCNGC 3 cut(s) 421, 424, 427
Bme1390I CCNGG 3 cut(s) 189, 394, 546
Bme18I GGWCC 1 cut(s) 396
BmeT110I CYCGRG 3 cut(s) 257, 385, 512
BmgT120I GGNCC 2 cut(s) 203, 396
BmiI GGNNCC 5 cut(s) 177, 205, 292, 397, 640
BmrFI CCNGG 3 cut(s) 189, 394, 546
BmrI ACTGGG 2 cut(s) 137, 289
BmuI ACTGGG 2 cut(s) 137, 289
BpiI GAAGAC 1 cut(s) 244
Bpu1102I GCTNAGC 2 cut(s) 269, 536
BpuMI CCSGG 3 cut(s) 189, 394, 546
BsaHI GRCGYC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 286, 544
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 459
Bse118I RCCGGY 2 cut(s) 200, 210
Bse1I ACTGG 3 cut(s) 118, 143, 295
BseDI CCNNGG 2 cut(s) 286, 544
BseLI CCNNNNNNNGG 2 cut(s) 392, 459
BseMII CTCAG 5 cut(s) 144, 283, 423, 499, 527
BseNI ACTGG 3 cut(s) 118, 143, 295
BseRI GAGGAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 204, 671
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 542
BsiHKCI CYCGRG 3 cut(s) 257, 385, 512
BsiSI CCGG 7 cut(s) 123, 189, 201, 211, 393, 416, 546
BslI CCNNNNNNNGG 2 cut(s) 392, 459
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 2 cut(s) 204, 671
Bso31I GGTCTC 1 cut(s) 87
BsoBI CYCGRG 3 cut(s) 257, 385, 512
Bsp1286I GDGCHC 2 cut(s) 350, 542
Bsp143I GATC 2 cut(s) 261, 500
Bsp1720I GCTNAGC 2 cut(s) 269, 536
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 9 cut(s) 208, 308, 419, 422, 425, 509, 533, 588, 593
BspANI GGCC 2 cut(s) 204, 671
BspCNI CTCAG 5 cut(s) 143, 282, 424, 498, 528
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 5 cut(s) 177, 205, 292, 397, 640
BspPI GGATC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 87
BsrFI RCCGGY 2 cut(s) 200, 210
BsrI ACTGG 3 cut(s) 118, 143, 295
BssAI RCCGGY 2 cut(s) 200, 210
BssECI CCNNGG 2 cut(s) 286, 544
BssMI GATC 2 cut(s) 261, 500
BssNI GRCGYC 1 cut(s) 428
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 219, 408
Bst6I CTCTTC 2 cut(s) 383, 432
BstACI GRCGYC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 5 cut(s) 130, 269, 432, 485, 536
BstDSI CCRYGG 1 cut(s) 286
BstEII GGTNACC 3 cut(s) 191, 213, 548
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 2 cut(s) 264, 503
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 261, 500
BstMWI GCNNNNNNNGC 3 cut(s) 232, 307, 425
BstPI GGTNACC 3 cut(s) 191, 213, 548
BstSCI CCNGG 3 cut(s) 187, 392, 544
BstUI CGCG 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 204, 671
BtgI CCRYGG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 491
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 1 cut(s) 312
Cfr10I RCCGGY 2 cut(s) 200, 210
Cfr13I GGNCC 2 cut(s) 203, 396
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 5 cut(s) 247, 287, 554, 601, 619
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 5 cut(s) 130, 269, 432, 485, 536
DpnI GATC 2 cut(s) 263, 502
DpnII GATC 2 cut(s) 261, 500
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 383, 432
EarI CTCTTC 2 cut(s) 383, 432
Ecl136II GAGCTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 350, 542
Eco31I GGTCTC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 540
Eco88I CYCGRG 3 cut(s) 257, 385, 512
Eco91I GGTNACC 3 cut(s) 191, 213, 548
EcoICRI GAGCTC 1 cut(s) 540
EcoO65I GGTNACC 3 cut(s) 191, 213, 548
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 350, 542
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 5 cut(s) 250, 290, 557, 604, 622
FaiI YATR 5 cut(s) 248, 288, 555, 602, 620
FatI CATG 5 cut(s) 246, 286, 553, 600, 618
FauI CCCGC 3 cut(s) 215, 315, 516
Fnu4HI GCNGC 3 cut(s) 420, 423, 426
FriOI GRGCYC 2 cut(s) 350, 542
Fsp4HI GCNGC 3 cut(s) 420, 423, 426
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 420, 423, 426
HaeIII GGCC 2 cut(s) 204, 671
HapII CCGG 7 cut(s) 123, 189, 201, 211, 393, 416, 546
HgaI GACGC 1 cut(s) 417
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 5 cut(s) 250, 290, 557, 604, 622
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 6 cut(s) 128, 332, 340, 371, 401, 613
HpaII CCGG 7 cut(s) 123, 189, 201, 211, 393, 416, 546
HphI GGTGA 9 cut(s) 5, 33, 137, 139, 203, 207, 346, 396, 542
Hpy188I TCNGA 7 cut(s) 92, 133, 345, 370, 400, 433, 505
Hpy188III TCNNGA 2 cut(s) 259, 385
HpyAV CCTTC 3 cut(s) 97, 436, 486
HpyCH4III ACNGT 2 cut(s) 219, 408
HpyCH4V TGCA 2 cut(s) 472, 600
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 307, 425
HpyF3I CTNAG 5 cut(s) 130, 269, 432, 485, 536
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 5 cut(s) 250, 290, 557, 604, 622
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 261, 500
LmnI GCTCC 5 cut(s) 144, 231, 296, 330, 545
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 8 cut(s) 125, 145, 191, 213, 352, 402, 516, 548
MalI GATC 2 cut(s) 263, 502
MboI GATC 2 cut(s) 261, 500
MboII GAAGA 7 cut(s) 42, 249, 370, 373, 449, 587, 590
MhlI GDGCHC 2 cut(s) 350, 542
MluCI AATT 2 cut(s) 183, 563
MlyI GAGTC 4 cut(s) 122, 326, 365, 410
MnlI CCTC 7 cut(s) 153, 243, 284, 293, 338, 427, 491
MspA1I CMGCKG 1 cut(s) 535
MspI CCGG 7 cut(s) 123, 189, 201, 211, 393, 416, 546
MspR9I CCNGG 3 cut(s) 189, 394, 546
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 232, 307, 425
NciI CCSGG 3 cut(s) 189, 394, 546
NcoI CCATGG 1 cut(s) 286
NdeII GATC 2 cut(s) 261, 500
NlaIII CATG 5 cut(s) 250, 290, 557, 604, 622
NlaIV GGNNCC 5 cut(s) 177, 205, 292, 397, 640
NmeAIII GCCGAG 3 cut(s) 342, 478, 519
NmuCI GTSAC 7 cut(s) 125, 145, 191, 213, 352, 402, 548
PaeR7I CTCGAG 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 2 cut(s) 340, 613
PkrI GCNGC 3 cut(s) 421, 424, 427
PleI GAGTC 4 cut(s) 122, 326, 365, 409
PpsI GAGTC 4 cut(s) 122, 326, 365, 409
Psp124BI GAGCTC 1 cut(s) 542
PspEI GGTNACC 3 cut(s) 191, 213, 548
PspN4I GGNNCC 5 cut(s) 177, 205, 292, 397, 640
PspPI GGNCC 2 cut(s) 203, 396
PstNI CAGNNNCTG 1 cut(s) 109
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacI GAGCTC 1 cut(s) 542
SatI GCNGC 3 cut(s) 420, 423, 426
Sau3AI GATC 2 cut(s) 261, 500
Sau96I GGNCC 2 cut(s) 203, 396
SchI GAGTC 4 cut(s) 122, 326, 365, 410
ScrFI CCNGG 3 cut(s) 189, 394, 546
SduI GDGCHC 2 cut(s) 350, 542
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 2 cut(s) 183, 563
SsiI CCGC 9 cut(s) 208, 308, 419, 422, 425, 509, 533, 588, 593
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 187, 392, 544
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 219, 408
TaqI TCGA 2 cut(s) 258, 330
TasI AATT 2 cut(s) 183, 563
TatI WGTACW 1 cut(s) 100
TauI GCSGC 3 cut(s) 422, 425, 428
TfiI GAWTC 2 cut(s) 340, 613
TseFI GTSAC 7 cut(s) 125, 145, 191, 213, 352, 402, 548
Tsp45I GTSAC 7 cut(s) 125, 145, 191, 213, 352, 402, 548
VpaK11BI GGWCC 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.