Rroxscaffold_2G00109770

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013553
Physical Location & Seq
Reverse (-)
33979025 .. 33980271
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109770.1

Sequence Viewer

Length: 567 bp
ATGAACCCGCACACACCCACTTACGGATCCGACCCGGCTTCCCCCAACACCACCTACGTCCAAGCCGACCCATCAAACTTCCGGGCCGTTGTCCAGAAGCTCACCGGCGCAACGGAAGACCCGTTGGCCCAGAAGCTCCCTCTCACCCTCCCCGCCCGCTACACCAACCCCAAACCCGCCGCCGACGTGGGCCCCCGACGACCCGCCTTCAAGCTCCACGAACGCAGACACAGCACCAAGAAGCTCGAGATCCACCTCACCACCACAACAGTACTCCCATCATCCGCATGTGTACCCCAGCTTGTTCGGCCGGTGATGATGTCACCTGTTTCGCCGTTTGAGTTTCTGGCACGTGGGAGCCCCAGGACGCCGGTGTCGCCGTGCGAGGTGGAGGAGGAAGAGGAGCGAGCCATTATCGCAGAGAAAGGGTTCTATCTGCACCAAGCAAGTCCGTTAAGTACGCCGCGAGGGTCCGATCATCATCATCCACCTGAGCTTTTGCCTTTGTTTCCTTTGCATTCTCCTCGAGATATCACTCGAACTCAAACCTCAACCTCTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

188

Amino Acids

20.72

Weight (kDa)

8.63

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 41 4e-13 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccII CGCG 1 cut(s) 466
AciI CCGC 8 cut(s) 8, 153, 157, 177, 180, 204, 285, 464
AclWI GGATC 3 cut(s) 21, 34, 244
AcoI YGGCCR 1 cut(s) 308
AcvI CACGTG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 3 cut(s) 273, 294, 460
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 211
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 6 cut(s) 100, 136, 214, 244, 301, 496
AluI AGCT 6 cut(s) 100, 136, 214, 244, 301, 496
AlwI GGATC 3 cut(s) 21, 34, 244
Ama87I CYCGRG 2 cut(s) 245, 525
AoxI GGCC 4 cut(s) 84, 126, 190, 308
ApaI GGGCCC 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 5 cut(s) 84, 127, 190, 191, 471
AsuC2I CCSGG 2 cut(s) 35, 83
AsuHPI GGTGA 5 cut(s) 94, 136, 250, 315, 325
AvaI CYCGRG 2 cut(s) 245, 525
AvaII GGWCC 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 26
BanII GRGCYC 2 cut(s) 194, 362
BbrPI CACGTG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 2 cut(s) 79, 286
BceAI ACGGC 3 cut(s) 71, 319, 364
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 2 cut(s) 35, 83
BisI GCNGC 2 cut(s) 180, 464
BlsI GCNGC 2 cut(s) 181, 465
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 35, 83, 364
Bme18I GGWCC 1 cut(s) 471
BmeT110I CYCGRG 2 cut(s) 245, 525
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 5 cut(s) 84, 127, 190, 191, 471
BmiI GGNNCC 5 cut(s) 28, 192, 193, 359, 472
BmrFI CCNGG 3 cut(s) 35, 83, 364
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 492
BpuMI CCSGG 2 cut(s) 35, 83
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 3 cut(s) 104, 310, 370
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 281, 484
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 3 cut(s) 407, 416, 513
BseSI GKGCMC 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 4 cut(s) 86, 128, 192, 310
BsiEI CGRYCG 1 cut(s) 311
BsiHKCI CYCGRG 2 cut(s) 245, 525
BsiSI CCGG 5 cut(s) 35, 82, 105, 311, 371
BslI CCNNNNNNNGG 1 cut(s) 23
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 4 cut(s) 86, 128, 192, 310
BsoBI CYCGRG 2 cut(s) 245, 525
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 194, 362
Bsp143I GATC 3 cut(s) 26, 249, 475
BspACI CCGC 8 cut(s) 8, 153, 157, 177, 180, 204, 285, 464
BspANI GGCC 4 cut(s) 86, 128, 192, 310
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 5 cut(s) 28, 192, 193, 359, 472
BspPI GGATC 3 cut(s) 21, 34, 244
BsrFI RCCGGY 3 cut(s) 104, 310, 370
BssAI RCCGGY 3 cut(s) 104, 310, 370
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 3 cut(s) 26, 249, 475
BssNI GRCGYC 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 157, 408
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 281, 484
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 3 cut(s) 29, 252, 478
BstMBI GATC 3 cut(s) 26, 249, 475
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 416
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 33, 81, 362
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 26, 249
BstYI RGATCY 2 cut(s) 26, 249
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 4 cut(s) 86, 128, 192, 310
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 281, 484
Cac8I GCNNGC 2 cut(s) 157, 408
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 3 cut(s) 104, 310, 370
Cfr13I GGNCC 5 cut(s) 84, 127, 190, 191, 471
CseI GACGC 1 cut(s) 376
Csp6I GTAC 3 cut(s) 272, 293, 459
CviAII CATG 1 cut(s) 288
CviQI GTAC 3 cut(s) 272, 293, 459
DdeI CTNAG 1 cut(s) 492
DpnI GATC 3 cut(s) 28, 251, 477
DpnII GATC 3 cut(s) 26, 249, 475
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EclXI CGGCCG 1 cut(s) 308
Eco24I GRGCYC 2 cut(s) 194, 362
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 471
Eco52I CGGCCG 1 cut(s) 308
Eco72I CACGTG 1 cut(s) 353
Eco88I CYCGRG 2 cut(s) 245, 525
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 532
EcoT38I GRGCYC 2 cut(s) 194, 362
FaeI CATG 1 cut(s) 291
FaiI YATR 1 cut(s) 289
FatI CATG 1 cut(s) 287
FauI CCCGC 5 cut(s) 15, 160, 164, 184, 211
Fnu4HI GCNGC 2 cut(s) 180, 464
FokI GGATG 2 cut(s) 268, 471
FriOI GRGCYC 2 cut(s) 194, 362
Fsp4HI GCNGC 2 cut(s) 180, 464
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 180, 464
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 4 cut(s) 86, 128, 192, 310
HapII CCGG 5 cut(s) 35, 82, 105, 311, 371
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 5 cut(s) 35, 82, 105, 311, 371
HphI GGTGA 5 cut(s) 94, 136, 250, 315, 325
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 31, 475
Hpy188III TCNNGA 3 cut(s) 94, 247, 527
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 2 cut(s) 188, 201
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 3 cut(s) 57, 186, 352
HpyCH4V TGCA 2 cut(s) 439, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 416
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 3 cut(s) 57, 186, 352
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 26, 249, 475
LmnI GCTCC 4 cut(s) 141, 219, 357, 403
MaeII ACGT 3 cut(s) 57, 186, 352
MaeIII GTNAC 1 cut(s) 321
MalI GATC 3 cut(s) 28, 251, 477
MboI GATC 3 cut(s) 26, 249, 475
MboII GAAGA 2 cut(s) 128, 410
MflI RGATCY 2 cut(s) 26, 249
MhlI GDGCHC 2 cut(s) 194, 362
MmeI TCCRAC 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 2 cut(s) 455, 565
MslI CAYNNNNRTG 1 cut(s) 286
MspI CCGG 5 cut(s) 35, 82, 105, 311, 371
MspR9I CCNGG 3 cut(s) 35, 83, 364
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 416
NciI CCSGG 2 cut(s) 35, 83
NdeII GATC 3 cut(s) 26, 249, 475
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 5 cut(s) 28, 192, 193, 359, 472
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 291
PaeR7I CTCGAG 2 cut(s) 245, 525
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 119
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 428
PkrI GCNGC 2 cut(s) 181, 465
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 362
PspCI CACGTG 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 5 cut(s) 28, 192, 193, 359, 472
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 5 cut(s) 84, 127, 190, 191, 471
PsuI RGATCY 2 cut(s) 26, 249
RsaI GTAC 3 cut(s) 273, 294, 460
RsaNI GTAC 3 cut(s) 272, 293, 459
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 2 cut(s) 455, 565
SatI GCNGC 2 cut(s) 180, 464
Sau3AI GATC 3 cut(s) 26, 249, 475
Sau96I GGNCC 5 cut(s) 84, 127, 190, 191, 471
ScaI AGTACT 1 cut(s) 273
ScrFI CCNGG 3 cut(s) 35, 83, 364
SduI GDGCHC 2 cut(s) 194, 362
Sfr274I CTCGAG 2 cut(s) 245, 525
SgrAI CRCCGGYG 2 cut(s) 104, 370
SinI GGWCC 1 cut(s) 471
SlaI CTCGAG 2 cut(s) 245, 525
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 2 cut(s) 245, 525
SmoI CTYRAG 2 cut(s) 245, 525
SsiI CCGC 8 cut(s) 8, 153, 157, 177, 180, 204, 285, 464
StyD4I CCNGG 3 cut(s) 33, 81, 362
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 3 cut(s) 60, 189, 355
TaqI TCGA 3 cut(s) 246, 526, 538
TatI WGTACW 1 cut(s) 271
TauI GCSGC 2 cut(s) 182, 466
Tru1I TTAA 2 cut(s) 455, 565
Tru9I TTAA 2 cut(s) 455, 565
TseFI GTSAC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 39, 128, 441
VpaK11BI GGWCC 1 cut(s) 471
XceI RCATGY 1 cut(s) 291
XhoI CTCGAG 2 cut(s) 245, 525
XmnI GAANNNNTTC 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.