RLG00000019420

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013553
Physical Location & Seq
Forward (+)
51834724 .. 51838643
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019420

Sequence Viewer

Length: 816 bp
ATGGCCTTGGTTGGAGGTGATCATACGCACCTGCGCCTGAGGGATCTACCTATTCTGGTCTTGGTTCTTGGTTTGGCCACTCAGACTCCAGGTTGTGATACTAATGGTGGTGAAAGGTGGTCGGCTAGGGCACAGACAACCGCAGTTTTGGACGACAATAGCTCCCTACCATTTGATGCCTCTCTTCTTCTGCTTCCCGCTGCTTCGTTTCTTTCTCAGAAACCTCCCACTTCTTCCCTCGCCACCAACATGAACCCTCACACACCCACTTACGGATCTGACCCGGCTTCTCCCAACACCACCTACGTCCAAGCCGACCCATCAAACTTCCGGGCCGTCGTCCAGAAGCTCACCGGCGCAACGGAAGACCCGTTGGCCCAGAAGCTCCCTCTCACCCTCCCCGCCCGCTACACCAACCCCAAACCCGCCGCCGAAGTGGGCCCCCGACGACCCGCCTTCAAGCTCCACGAACGCAGACACAGCACCAAGAAGCTCGAGCTCCACCTCACCACCACAACAGTACTCCCATCATCGGCATGTGTACCCCAGCTTGTTCGGCCGGTGATGATGTCACCTGTTTCGCCGTTTGAATTTCTGGCACGTGGGAGCCCCAGGACGCCTGTGTCGCCGTGCGAGGTGGAGGAGGAAGAGGAGCGAGCCATTATCGCAGAGAAAGGGTTCTATCTGCACCAAGCAAGTCCGTTAAGTACACCGCGAGGGTCCGATCATCATCATCCACCTGAGCTTTTACCTTTGTTTCCTTTGCATTCTCCTCGAGATATCACTCGAACTCAAACCTCAACCTCTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

272

Amino Acids

29.41

Weight (kDa)

7.19

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 98 - 124 6.8e-13 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 39
AasI GACNNNNNNGTC 1 cut(s) 622
Acc36I ACCTGC 1 cut(s) 39
AccII CGCG 1 cut(s) 715
AciI CCGC 8 cut(s) 141, 198, 402, 406, 426, 429, 453, 713
AclWI GGATC 2 cut(s) 51, 283
AcoI YGGCCR 2 cut(s) 75, 557
AcsI RAATTY 1 cut(s) 590
AcvI CACGTG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 617
AfaI GTAC 3 cut(s) 522, 543, 709
AfiI CCNNNNNNNGG 2 cut(s) 272, 532
AgsI TTSAA 2 cut(s) 460, 590
AjnI CCWGG 2 cut(s) 88, 611
AluBI AGCT 8 cut(s) 162, 349, 385, 463, 493, 499, 550, 745
AluI AGCT 8 cut(s) 162, 349, 385, 463, 493, 499, 550, 745
Alw21I GWGCWC 1 cut(s) 501
AlwI GGATC 2 cut(s) 51, 283
Ama87I CYCGRG 2 cut(s) 494, 774
AoxI GGCC 6 cut(s) 3, 75, 333, 375, 439, 557
ApaI GGGCCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 677
AspLEI GCGC 2 cut(s) 36, 359
AspS9I GGNCC 5 cut(s) 333, 376, 439, 440, 720
AsuC2I CCSGG 2 cut(s) 284, 332
AsuHPI GGTGA 7 cut(s) 29, 122, 343, 385, 499, 564, 574
AvaI CYCGRG 2 cut(s) 494, 774
AvaII GGWCC 1 cut(s) 720
AxyI CCTNAGG 1 cut(s) 38
BaeGI GKGCMC 2 cut(s) 133, 443
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 3 cut(s) 443, 501, 611
BbrPI CACGTG 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 328, 535
BceAI ACGGC 3 cut(s) 320, 568, 613
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 2 cut(s) 90, 613
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 2 cut(s) 284, 332
BfaI CTAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 2 cut(s) 201, 429
BlsI GCNGC 2 cut(s) 202, 430
BmcAI AGTACT 1 cut(s) 522
Bme1390I CCNGG 4 cut(s) 90, 284, 332, 613
Bme18I GGWCC 1 cut(s) 720
BmeT110I CYCGRG 2 cut(s) 494, 774
BmgT120I GGNCC 5 cut(s) 333, 376, 439, 440, 720
BmiI GGNNCC 4 cut(s) 441, 442, 608, 721
BmrFI CCNGG 4 cut(s) 90, 284, 332, 613
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 741
BpuMI CCSGG 2 cut(s) 284, 332
BsaAI YACGTR 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 6, 611
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 146, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 532
Bse118I RCCGGY 2 cut(s) 353, 559
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 729
BseBI CCWGG 2 cut(s) 90, 613
BseDI CCNNGG 2 cut(s) 6, 611
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 2 cut(s) 272, 532
BseMII CTCAG 4 cut(s) 29, 95, 230, 732
BseRI GAGGAG 3 cut(s) 656, 665, 762
BseSI GKGCMC 2 cut(s) 133, 443
BseX3I CGGCCG 1 cut(s) 557
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 546
BsgI GTGCAG 1 cut(s) 671
Bsh1236I CGCG 1 cut(s) 715
Bsh1285I CGRYCG 1 cut(s) 560
BshFI GGCC 6 cut(s) 5, 77, 335, 377, 441, 559
BsiEI CGRYCG 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 2 cut(s) 494, 774
BsiSI CCGG 4 cut(s) 284, 331, 354, 560
BslI CCNNNNNNNGG 2 cut(s) 272, 532
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 6 cut(s) 5, 77, 335, 377, 441, 559
BsoBI CYCGRG 2 cut(s) 494, 774
Bsp120I GGGCCC 1 cut(s) 439
Bsp1286I GDGCHC 4 cut(s) 133, 443, 501, 611
Bsp143I GATC 4 cut(s) 19, 43, 275, 724
BspACI CCGC 8 cut(s) 141, 198, 402, 406, 426, 429, 453, 713
BspANI GGCC 6 cut(s) 5, 77, 335, 377, 441, 559
BspCNI CTCAG 4 cut(s) 30, 94, 229, 733
BspFNI CGCG 1 cut(s) 715
BspLI GGNNCC 4 cut(s) 441, 442, 608, 721
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 51, 283
BsrFI RCCGGY 2 cut(s) 353, 559
BssAI RCCGGY 2 cut(s) 353, 559
BssECI CCNNGG 2 cut(s) 6, 611
BssMI GATC 4 cut(s) 19, 43, 275, 724
BssNI GRCGYC 1 cut(s) 617
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 90, 613
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 2 cut(s) 189, 642
BstACI GRCGYC 1 cut(s) 617
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 406, 657
BstDEI CTNAG 4 cut(s) 38, 81, 216, 741
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 1 cut(s) 715
BstHHI GCGC 2 cut(s) 36, 359
BstKTI GATC 4 cut(s) 22, 46, 278, 727
BstMBI GATC 4 cut(s) 19, 43, 275, 724
BstMCI CGRYCG 1 cut(s) 560
BstMWI GCNNNNNNNGC 4 cut(s) 480, 556, 625, 665
BstNI CCWGG 2 cut(s) 90, 613
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 4 cut(s) 88, 282, 330, 611
BstSLI GKGCMC 2 cut(s) 133, 443
BstUI CGCG 1 cut(s) 715
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 2 cut(s) 43, 275
BstYI RGATCY 2 cut(s) 43, 275
BstZI CGGCCG 1 cut(s) 557
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 6 cut(s) 5, 77, 335, 377, 441, 559
BtsCI GGATG 1 cut(s) 733
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 406, 657
CfoI GCGC 2 cut(s) 36, 359
Cfr10I RCCGGY 2 cut(s) 353, 559
Cfr13I GGNCC 5 cut(s) 333, 376, 439, 440, 720
CseI GACGC 1 cut(s) 625
Csp6I GTAC 3 cut(s) 521, 542, 708
CviAII CATG 2 cut(s) 250, 537
CviQI GTAC 3 cut(s) 521, 542, 708
DdeI CTNAG 4 cut(s) 38, 81, 216, 741
DpnI GATC 4 cut(s) 21, 45, 277, 726
DpnII GATC 4 cut(s) 19, 43, 275, 724
DrdI GACNNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 622
EaeI YGGCCR 2 cut(s) 75, 557
EagI CGGCCG 1 cut(s) 557
Eam1104I CTCTTC 2 cut(s) 189, 642
EarI CTCTTC 2 cut(s) 189, 642
Ecl136II GAGCTC 1 cut(s) 499
EclXI CGGCCG 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 3 cut(s) 443, 501, 611
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 720
Eco52I CGGCCG 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 499
Eco72I CACGTG 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 38
Eco88I CYCGRG 2 cut(s) 494, 774
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 2 cut(s) 88, 611
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 443, 501, 611
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 253, 540
FaiI YATR 3 cut(s) 24, 251, 538
FatI CATG 2 cut(s) 249, 536
FauI CCCGC 5 cut(s) 205, 409, 413, 433, 460
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 201, 429
FokI GGATG 1 cut(s) 720
FriOI GRGCYC 3 cut(s) 443, 501, 611
Fsp4HI GCNGC 2 cut(s) 201, 429
FspBI CTAG 1 cut(s) 126
GlaI GCGC 2 cut(s) 35, 358
GluI GCNGC 2 cut(s) 201, 429
GsaI CCCAGC 1 cut(s) 550
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 6 cut(s) 5, 77, 335, 377, 441, 559
HapII CCGG 4 cut(s) 284, 331, 354, 560
HgaI GACGC 1 cut(s) 625
HhaI GCGC 2 cut(s) 36, 359
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 2 cut(s) 253, 540
Hin6I GCGC 2 cut(s) 34, 357
HinP1I GCGC 2 cut(s) 34, 357
HinfI GANTC 1 cut(s) 85
HpaII CCGG 4 cut(s) 284, 331, 354, 560
HphI GGTGA 7 cut(s) 29, 122, 343, 385, 499, 564, 574
Hpy166II GTNNAC 2 cut(s) 542, 710
Hpy188I TCNGA 4 cut(s) 84, 219, 280, 724
Hpy188III TCNNGA 2 cut(s) 343, 776
Hpy8I GTNNAC 2 cut(s) 542, 710
Hpy99I CGWCG 2 cut(s) 341, 450
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 306, 601
HpyCH4V TGCA 2 cut(s) 688, 766
HpyF10VI GCNNNNNNNGC 4 cut(s) 480, 556, 625, 665
HpyF3I CTNAG 4 cut(s) 38, 81, 216, 741
HpySE526I ACGT 2 cut(s) 306, 601
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 2 cut(s) 253, 540
HspAI GCGC 2 cut(s) 34, 357
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 43, 275, 724
LmnI GCTCC 6 cut(s) 167, 390, 468, 504, 606, 652
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 306, 601
MaeIII GTNAC 1 cut(s) 570
MalI GATC 4 cut(s) 21, 45, 277, 726
MboI GATC 4 cut(s) 19, 43, 275, 724
MboII GAAGA 5 cut(s) 176, 179, 225, 377, 659
MflI RGATCY 2 cut(s) 43, 275
MhlI GDGCHC 4 cut(s) 133, 443, 501, 611
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 1 cut(s) 590
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 79
Mox20I TGGCCA 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 677
MscI TGGCCA 1 cut(s) 77
MseI TTAA 2 cut(s) 704, 814
MslI CAYNNNNRTG 2 cut(s) 248, 535
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 4 cut(s) 284, 331, 354, 560
MspR9I CCNGG 4 cut(s) 90, 284, 332, 613
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 2 cut(s) 90, 613
MvnI CGCG 1 cut(s) 715
MwoI GCNNNNNNNGC 4 cut(s) 480, 556, 625, 665
NciI CCSGG 2 cut(s) 284, 332
NdeII GATC 4 cut(s) 19, 43, 275, 724
NlaIII CATG 2 cut(s) 253, 540
NlaIV GGNNCC 4 cut(s) 441, 442, 608, 721
NmuCI GTSAC 1 cut(s) 570
NspI RCATGY 1 cut(s) 540
PaeR7I CTCGAG 2 cut(s) 494, 774
PaqCI CACCTGC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 368
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 677
PkrI GCNGC 2 cut(s) 202, 430
PleI GAGTC 1 cut(s) 79
PmaCI CACGTG 1 cut(s) 602
PmlI CACGTG 1 cut(s) 602
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 88, 611
PspCI CACGTG 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 546
PspGI CCWGG 2 cut(s) 88, 611
PspN4I GGNNCC 4 cut(s) 441, 442, 608, 721
PspOMI GGGCCC 1 cut(s) 439
PspPI GGNCC 5 cut(s) 333, 376, 439, 440, 720
PspXI VCTCGAGB 1 cut(s) 494
PsuI RGATCY 2 cut(s) 43, 275
RsaI GTAC 3 cut(s) 522, 543, 709
RsaNI GTAC 3 cut(s) 521, 542, 708
RseI CAYNNNNRTG 2 cut(s) 248, 535
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 704, 814
SatI GCNGC 2 cut(s) 201, 429
Sau3AI GATC 4 cut(s) 19, 43, 275, 724
Sau96I GGNCC 5 cut(s) 333, 376, 439, 440, 720
ScaI AGTACT 1 cut(s) 522
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 4 cut(s) 90, 284, 332, 613
SduI GDGCHC 4 cut(s) 133, 443, 501, 611
SfaNI GCATC 1 cut(s) 166
Sfr274I CTCGAG 2 cut(s) 494, 774
SgrAI CRCCGGYG 1 cut(s) 353
SinI GGWCC 1 cut(s) 720
SlaI CTCGAG 2 cut(s) 494, 774
SmiMI CAYNNNNRTG 2 cut(s) 248, 535
SmlI CTYRAG 2 cut(s) 494, 774
SmoI CTYRAG 2 cut(s) 494, 774
Sse9I AATT 1 cut(s) 590
SsiI CCGC 8 cut(s) 141, 198, 402, 406, 426, 429, 453, 713
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 4 cut(s) 88, 282, 330, 611
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 309, 604
TaqI TCGA 3 cut(s) 495, 775, 787
TasI AATT 1 cut(s) 590
TatI WGTACW 2 cut(s) 520, 707
TauI GCSGC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 704, 814
Tru9I TTAA 2 cut(s) 704, 814
TseFI GTSAC 1 cut(s) 570
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 3 cut(s) 288, 377, 690
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 590
XceI RCATGY 1 cut(s) 540
XhoI CTCGAG 2 cut(s) 494, 774
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.