Rh2AG373800

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013553
Physical Location & Seq
Reverse (-)
55563567 .. 55564892
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG373800.1

Sequence Viewer

Length: 576 bp
ATGAACCCTCACACACCCACTTACGGATCCGACCCGGCTTCCCCCAACACCACCTACGTCCAAGCCAACCCATCAAACTTCCGGGCCGTCGTCCAGAAGCTCACCGGCGCAACGGAAGACCCGTTGGCCCAGAAGCTCCCTCTCACCCTCCCCGCCCGCTACACCAACCCCAAACCCGCCGCCGAAGTGGGGCCCCGACGACCCGCCTTCAAGCTCCACGAACGCAGACACAGCACCAAGAAGCTCGAGCTCCACCTCACCACCACAACAGTACTCCCATCATCGGCATGTGTACCCCAGCTTGTTCGGCCGGTGATGATGTCACCTGTTTCGCCGTTTGAGTTTCTGGCACGTGGGAGCCCCAGGACGCCGGTGTCGCCGTGCGAGGTGGAGGAGGAAGAGGAGGCTGAGGAGCGAGCCAGTATCGCAGAGAAAGGGTTCTATCTGCACCAAGCAAGTCCGTTGAGTACACCGCGAGGGTCCGATCATCATCATCCACCTGAGCTTTTACCTTTGTTTCCTTTGCATTCTCCTCGAGATATCACTCGAACTCAAACCTCAGCCTCTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

191

Amino Acids

21.01

Weight (kDa)

7.89

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 41 1.3e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccII CGCG 1 cut(s) 475
AciI CCGC 6 cut(s) 153, 157, 177, 180, 204, 473
AclWI GGATC 2 cut(s) 21, 34
AcoI YGGCCR 1 cut(s) 308
AcvI CACGTG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 3 cut(s) 273, 294, 469
AfiI CCNNNNNNNGG 3 cut(s) 23, 189, 283
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 7 cut(s) 100, 136, 214, 244, 250, 301, 505
AluI AGCT 7 cut(s) 100, 136, 214, 244, 250, 301, 505
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 2 cut(s) 21, 34
Ama87I CYCGRG 2 cut(s) 245, 534
AoxI GGCC 4 cut(s) 84, 126, 191, 308
ApaI GGGCCC 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 5 cut(s) 84, 127, 191, 192, 480
AsuC2I CCSGG 2 cut(s) 35, 83
AsuHPI GGTGA 5 cut(s) 94, 136, 250, 315, 325
AvaI CYCGRG 2 cut(s) 245, 534
AvaII GGWCC 1 cut(s) 480
BaeGI GKGCMC 1 cut(s) 195
BamHI GGATCC 1 cut(s) 26
BanII GRGCYC 3 cut(s) 195, 252, 362
BbrPI CACGTG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 2 cut(s) 408, 559
BccI CCATC 2 cut(s) 79, 286
BceAI ACGGC 3 cut(s) 71, 319, 364
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 2 cut(s) 35, 83
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 35, 83, 364
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 2 cut(s) 245, 534
BmgT120I GGNCC 5 cut(s) 84, 127, 191, 192, 480
BmiI GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 481
BmrFI CCNGG 3 cut(s) 35, 83, 364
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 3 cut(s) 408, 501, 559
BpuMI CCSGG 2 cut(s) 35, 83
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 489
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 189, 283
Bse118I RCCGGY 3 cut(s) 104, 310, 370
Bse1I ACTGG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 493
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 3 cut(s) 23, 189, 283
BseMII CTCAG 3 cut(s) 399, 492, 573
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 4 cut(s) 407, 416, 425, 522
BseSI GKGCMC 1 cut(s) 195
BseX3I CGGCCG 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 4 cut(s) 86, 128, 193, 310
BsiEI CGRYCG 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 2 cut(s) 245, 534
BsiSI CCGG 5 cut(s) 35, 82, 105, 311, 371
BslI CCNNNNNNNGG 3 cut(s) 23, 189, 283
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 4 cut(s) 86, 128, 193, 310
BsoBI CYCGRG 2 cut(s) 245, 534
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 195, 252, 362
Bsp143I GATC 2 cut(s) 26, 484
BspACI CCGC 6 cut(s) 153, 157, 177, 180, 204, 473
BspANI GGCC 4 cut(s) 86, 128, 193, 310
BspCNI CTCAG 3 cut(s) 400, 493, 572
BspFNI CGCG 1 cut(s) 475
BspLI GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 481
BspPI GGATC 2 cut(s) 21, 34
BsrFI RCCGGY 3 cut(s) 104, 310, 370
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 3 cut(s) 104, 310, 370
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 2 cut(s) 26, 484
BssNI GRCGYC 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 157, 417
BstDEI CTNAG 3 cut(s) 408, 501, 559
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 29, 487
BstMBI GATC 2 cut(s) 26, 484
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 425
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 33, 81, 362
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 4 cut(s) 86, 128, 193, 310
BtsCI GGATG 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 157, 417
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 3 cut(s) 104, 310, 370
Cfr13I GGNCC 5 cut(s) 84, 127, 191, 192, 480
CseI GACGC 1 cut(s) 376
Csp6I GTAC 3 cut(s) 272, 293, 468
CviAII CATG 1 cut(s) 288
CviQI GTAC 3 cut(s) 272, 293, 468
DdeI CTNAG 3 cut(s) 408, 501, 559
DpnI GATC 2 cut(s) 28, 486
DpnII GATC 2 cut(s) 26, 484
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 308
Eco24I GRGCYC 3 cut(s) 195, 252, 362
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 480
Eco52I CGGCCG 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 250
Eco72I CACGTG 1 cut(s) 353
Eco88I CYCGRG 2 cut(s) 245, 534
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 2 cut(s) 191, 192
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 541
EcoT38I GRGCYC 3 cut(s) 195, 252, 362
FaeI CATG 1 cut(s) 291
FaiI YATR 1 cut(s) 289
FatI CATG 1 cut(s) 287
FauI CCCGC 4 cut(s) 160, 164, 184, 211
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 480
FriOI GRGCYC 3 cut(s) 195, 252, 362
Fsp4HI GCNGC 1 cut(s) 180
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 4 cut(s) 86, 128, 193, 310
HapII CCGG 5 cut(s) 35, 82, 105, 311, 371
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 5 cut(s) 35, 82, 105, 311, 371
HphI GGTGA 5 cut(s) 94, 136, 250, 315, 325
Hpy166II GTNNAC 2 cut(s) 293, 470
Hpy188I TCNGA 2 cut(s) 31, 484
Hpy188III TCNNGA 2 cut(s) 94, 536
Hpy8I GTNNAC 2 cut(s) 293, 470
Hpy99I CGWCG 2 cut(s) 92, 201
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 57, 352
HpyCH4V TGCA 2 cut(s) 448, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 425
HpyF3I CTNAG 3 cut(s) 408, 501, 559
HpySE526I ACGT 2 cut(s) 57, 352
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 26, 484
LmnI GCTCC 5 cut(s) 141, 219, 255, 357, 412
MaeII ACGT 2 cut(s) 57, 352
MaeIII GTNAC 1 cut(s) 321
MalI GATC 2 cut(s) 28, 486
MboI GATC 2 cut(s) 26, 484
MboII GAAGA 2 cut(s) 128, 410
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 3 cut(s) 195, 252, 362
MmeI TCCRAC 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 574
MslI CAYNNNNRTG 1 cut(s) 286
MspI CCGG 5 cut(s) 35, 82, 105, 311, 371
MspR9I CCNGG 3 cut(s) 35, 83, 364
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 425
NciI CCSGG 2 cut(s) 35, 83
NdeII GATC 2 cut(s) 26, 484
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 481
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 291
PaeR7I CTCGAG 2 cut(s) 245, 534
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 437
PkrI GCNGC 1 cut(s) 181
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 362
PspCI CACGTG 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 481
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 5 cut(s) 84, 127, 191, 192, 480
PspXI VCTCGAGB 1 cut(s) 245
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 3 cut(s) 273, 294, 469
RsaNI GTAC 3 cut(s) 272, 293, 468
RseI CAYNNNNRTG 1 cut(s) 286
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 574
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 26, 484
Sau96I GGNCC 5 cut(s) 84, 127, 191, 192, 480
ScaI AGTACT 1 cut(s) 273
ScrFI CCNGG 3 cut(s) 35, 83, 364
SduI GDGCHC 3 cut(s) 195, 252, 362
Sfr274I CTCGAG 2 cut(s) 245, 534
SgrAI CRCCGGYG 2 cut(s) 104, 370
SinI GGWCC 1 cut(s) 480
SlaI CTCGAG 2 cut(s) 245, 534
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 2 cut(s) 245, 534
SmoI CTYRAG 2 cut(s) 245, 534
SsiI CCGC 6 cut(s) 153, 157, 177, 180, 204, 473
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 3 cut(s) 33, 81, 362
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 60, 355
TaqI TCGA 3 cut(s) 246, 535, 547
TatI WGTACW 2 cut(s) 271, 467
TauI GCSGC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 574
Tru9I TTAA 1 cut(s) 574
TseFI GTSAC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 39, 128, 450
VpaK11BI GGWCC 1 cut(s) 480
XceI RCATGY 1 cut(s) 291
XhoI CTCGAG 2 cut(s) 245, 534
XmnI GAANNNNTTC 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.