Rmu_sc0000718.1_g000019

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000718.1
OG0013553
Physical Location & Seq
Reverse (-)
79212 .. 82112
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000718.1_g000019.1.cds

Sequence Viewer

Length: 900 bp
atgaaccctcacacacccacttacggatccgacccggcttcccccaacaccacctacgtccaagccaacccatcaaacttccgggccgtcgtccagaagctcaccggcgcaacggaagacccgttggcccagaagctccctctcaccctccccgcccgctacaccaaccccaaaccagccgccgaagtggggccccgacgacccgccttcaagctccacgaacgcagacacagcaccaagaagctcgagctccacctcaccaccacaacagtactcccatcatcggcatgtgtaccccagcttgttcggccggtgatgatgtcacctgtttcgccgtttgagtttctggcacgtgggagccccaggacgccggtgtcgccgtgcgaggtggaggaggaagaggagcgagccattatcgcagagaaagggttctatctgcaccaagcaagtccgttgagtacaccgcgaggattcattgtaggagatgacgactctaattctaattcaaggtggccgcttgtggttgtgatgctagtgtcgactctaatggtgatcgatgacaacttctcgttgatgttcatggaagagatctccaattcttgttcaacatcgcctcgtccaactccagacactgccatagcttcggtgccggtggtcaatctcacatcagatttcagcgagtccaactcgaagcccaactctaagctctggaaaatgcaaaacccgtcggagcagctatacgctttcgttcgtactccgtccaccgtgcacgatcagacgaagcacaactacaggcgtgacaacgacggtgtgaagaaccgaacgagacaggtttccaggcaggaggtggtcggagcgaagaattcaggtcggatcttgattcaggtcgcgggtcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

299

Amino Acids

33.12

Weight (kDa)

9.13

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 646
AccI GTMKAC 1 cut(s) 539
AccII CGCG 2 cut(s) 466, 890
AciI CCGC 7 cut(s) 153, 157, 180, 204, 464, 515, 890
AclWI GGATC 3 cut(s) 21, 34, 881
AcoI YGGCCR 2 cut(s) 308, 512
AcsI RAATTY 1 cut(s) 862
AcvI CACGTG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 4 cut(s) 273, 294, 460, 754
AfiI CCNNNNNNNGG 3 cut(s) 23, 189, 283
AgsI TTSAA 3 cut(s) 211, 507, 606
AjnI CCWGG 2 cut(s) 362, 836
AluBI AGCT 9 cut(s) 100, 136, 214, 244, 250, 301, 641, 706, 736
AluI AGCT 9 cut(s) 100, 136, 214, 244, 250, 301, 641, 706, 736
Alw21I GWGCWC 2 cut(s) 252, 771
Alw26I GTCTC 1 cut(s) 820
Alw44I GTGCAC 1 cut(s) 767
AlwI GGATC 3 cut(s) 21, 34, 881
AlwNI CAGNNNCTG 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 5 cut(s) 84, 126, 191, 308, 512
ApaI GGGCCC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 767
ApeKI GCWGC 1 cut(s) 733
ApoI RAATTY 1 cut(s) 862
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 4 cut(s) 84, 127, 191, 192
AsuC2I CCSGG 2 cut(s) 35, 83
AsuHPI GGTGA 6 cut(s) 94, 136, 250, 315, 325, 562
AvaI CYCGRG 1 cut(s) 245
BaeGI GKGCMC 2 cut(s) 195, 771
BamHI GGATCC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 3 cut(s) 195, 252, 362
BarI GAAGNNNNNNTAC 2 cut(s) 773, 805
BbrPI CACGTG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 252, 771
BbvI GCAGC 1 cut(s) 745
BccI CCATC 2 cut(s) 79, 286
BceAI ACGGC 3 cut(s) 71, 319, 364
BciT130I CCWGG 2 cut(s) 364, 838
BcnI CCSGG 2 cut(s) 35, 83
BcoDI GTCTC 1 cut(s) 820
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 790
BglII AGATCT 1 cut(s) 588
BisI GCNGC 3 cut(s) 180, 515, 734
BlsI GCNGC 3 cut(s) 181, 516, 735
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 4 cut(s) 35, 83, 364, 838
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 4 cut(s) 84, 127, 191, 192
BmiI GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 648
BmrFI CCNGG 4 cut(s) 35, 83, 364, 838
BmsI GCATC 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpmI CTGGAG 1 cut(s) 609
BpuMI CCSGG 2 cut(s) 35, 83
Bsa29I ATCGAT 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 189, 283
Bse118I RCCGGY 4 cut(s) 104, 310, 370, 649
BseBI CCWGG 2 cut(s) 364, 838
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 362
BseLI CCNNNNNNNGG 3 cut(s) 23, 189, 283
BseRI GAGGAG 2 cut(s) 407, 416
BseSI GKGCMC 2 cut(s) 195, 771
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 745
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 2 cut(s) 466, 890
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 5 cut(s) 86, 128, 193, 310, 514
BshNI GGYRCC 1 cut(s) 646
BshVI ATCGAT 1 cut(s) 555
BsiEI CGRYCG 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 252, 771
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 6 cut(s) 35, 82, 105, 311, 371, 650
BslI CCNNNNNNNGG 3 cut(s) 23, 189, 283
BsmAI GTCTC 1 cut(s) 820
BsnI GGCC 5 cut(s) 86, 128, 193, 310, 514
BsoBI CYCGRG 1 cut(s) 245
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 4 cut(s) 195, 252, 362, 771
Bsp143I GATC 5 cut(s) 26, 552, 588, 772, 873
BspACI CCGC 7 cut(s) 153, 157, 180, 204, 464, 515, 890
BspANI GGCC 5 cut(s) 86, 128, 193, 310, 514
BspDI ATCGAT 1 cut(s) 555
BspFNI CGCG 2 cut(s) 466, 890
BspLI GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 648
BspPI GGATC 3 cut(s) 21, 34, 881
BspT107I GGYRCC 1 cut(s) 646
BsrFI RCCGGY 4 cut(s) 104, 310, 370, 649
BssAI RCCGGY 4 cut(s) 104, 310, 370, 649
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 5 cut(s) 26, 552, 588, 772, 873
BssNI GRCGYC 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 364, 838
Bst4CI ACNGT 3 cut(s) 271, 766, 809
Bst6I CTCTTC 2 cut(s) 393, 579
BstACI GRCGYC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 157, 408
BstDEI CTNAG 1 cut(s) 702
BstFNI CGCG 2 cut(s) 466, 890
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 5 cut(s) 29, 555, 591, 775, 876
BstMAI GTCTC 1 cut(s) 820
BstMBI GATC 5 cut(s) 26, 552, 588, 772, 873
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 416
BstNI CCWGG 2 cut(s) 364, 838
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 4 cut(s) 33, 81, 362, 836
BstSFI CTRYAG 1 cut(s) 790
BstSLI GKGCMC 2 cut(s) 195, 771
BstUI CGCG 2 cut(s) 466, 890
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 3 cut(s) 26, 588, 873
BstYI RGATCY 3 cut(s) 26, 588, 873
BstZI CGGCCG 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 5 cut(s) 86, 128, 193, 310, 514
BsuTUI ATCGAT 1 cut(s) 555
BtgZI GCGATG 1 cut(s) 594
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 157, 408
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 4 cut(s) 104, 310, 370, 649
Cfr13I GGNCC 4 cut(s) 84, 127, 191, 192
ClaI ATCGAT 1 cut(s) 555
CseI GACGC 1 cut(s) 376
Csp6I GTAC 4 cut(s) 272, 293, 459, 753
CviAII CATG 2 cut(s) 288, 580
CviQI GTAC 4 cut(s) 272, 293, 459, 753
DdeI CTNAG 1 cut(s) 702
DpnI GATC 5 cut(s) 28, 554, 590, 774, 875
DpnII GATC 5 cut(s) 26, 552, 588, 772, 873
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 2 cut(s) 308, 512
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 393, 579
EarI CTCTTC 2 cut(s) 393, 579
Ecl136II GAGCTC 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 308
Eco24I GRGCYC 3 cut(s) 195, 252, 362
Eco52I CGGCCG 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 250
Eco72I CACGTG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 2 cut(s) 191, 192
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 2 cut(s) 362, 836
EcoT38I GRGCYC 3 cut(s) 195, 252, 362
FaeI CATG 2 cut(s) 291, 583
FaiI YATR 4 cut(s) 289, 581, 638, 739
FatI CATG 2 cut(s) 287, 579
FauI CCCGC 4 cut(s) 160, 164, 211, 883
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 3 cut(s) 180, 515, 734
FriOI GRGCYC 3 cut(s) 195, 252, 362
Fsp4HI GCNGC 3 cut(s) 180, 515, 734
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 180, 515, 734
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 5 cut(s) 86, 128, 193, 310, 514
HapII CCGG 6 cut(s) 35, 82, 105, 311, 371, 650
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 2 cut(s) 291, 583
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 5 cut(s) 471, 491, 541, 680, 880
HpaII CCGG 6 cut(s) 35, 82, 105, 311, 371, 650
HphI GGTGA 6 cut(s) 94, 136, 250, 315, 325, 562
Hpy166II GTNNAC 5 cut(s) 293, 461, 540, 762, 769
Hpy188I TCNGA 6 cut(s) 31, 670, 730, 777, 854, 873
Hpy188III TCNNGA 4 cut(s) 94, 626, 709, 877
Hpy8I GTNNAC 5 cut(s) 293, 461, 540, 762, 769
Hpy99I CGWCG 4 cut(s) 92, 201, 730, 809
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 271, 766, 809
HpyCH4IV ACGT 2 cut(s) 57, 352
HpyCH4V TGCA 3 cut(s) 439, 718, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 416
HpyF3I CTNAG 1 cut(s) 702
HpySE526I ACGT 2 cut(s) 57, 352
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 2 cut(s) 291, 583
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 5 cut(s) 26, 552, 588, 772, 873
LmnI GCTCC 7 cut(s) 141, 219, 255, 357, 403, 730, 854
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 1 cut(s) 519
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 57, 352
MaeIII GTNAC 2 cut(s) 321, 797
MalI GATC 5 cut(s) 28, 554, 590, 774, 875
MboI GATC 5 cut(s) 26, 552, 588, 772, 873
MboII GAAGA 5 cut(s) 128, 410, 596, 826, 871
MflI RGATCY 3 cut(s) 26, 588, 873
MhlI GDGCHC 4 cut(s) 195, 252, 362, 771
MluCI AATT 4 cut(s) 496, 502, 595, 862
MlyI GAGTC 3 cut(s) 485, 535, 689
MmeI TCCRAC 6 cut(s) 54, 644, 708, 708, 832, 851
MroXI GAANNNNTTC 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 286
MspI CCGG 6 cut(s) 35, 82, 105, 311, 371, 650
MspR9I CCNGG 4 cut(s) 35, 83, 364, 838
MvaI CCWGG 2 cut(s) 364, 838
MvnI CGCG 2 cut(s) 466, 890
MwoI GCNNNNNNNGC 4 cut(s) 231, 307, 376, 416
NciI CCSGG 2 cut(s) 35, 83
NdeII GATC 5 cut(s) 26, 552, 588, 772, 873
NlaIII CATG 2 cut(s) 291, 583
NlaIV GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 648
NmuCI GTSAC 2 cut(s) 321, 797
NspI RCATGY 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 471, 880
PkrI GCNGC 3 cut(s) 181, 516, 735
PleI GAGTC 3 cut(s) 485, 535, 688
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
PpsI GAGTC 3 cut(s) 485, 535, 688
Ppu21I YACGTR 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 362, 836
PspCI CACGTG 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 362, 836
PspN4I GGNNCC 6 cut(s) 28, 192, 193, 194, 359, 648
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 4 cut(s) 84, 127, 191, 192
PspXI VCTCGAGB 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 3 cut(s) 26, 588, 873
RsaI GTAC 4 cut(s) 273, 294, 460, 754
RsaNI GTAC 4 cut(s) 272, 293, 459, 753
RseI CAYNNNNRTG 1 cut(s) 286
SacI GAGCTC 1 cut(s) 252
SalI GTCGAC 1 cut(s) 538
SatI GCNGC 3 cut(s) 180, 515, 734
Sau3AI GATC 5 cut(s) 26, 552, 588, 772, 873
Sau96I GGNCC 4 cut(s) 84, 127, 191, 192
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 3 cut(s) 485, 535, 689
ScrFI CCNGG 4 cut(s) 35, 83, 364, 838
SduI GDGCHC 4 cut(s) 195, 252, 362, 771
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 1 cut(s) 790
Sfr274I CTCGAG 1 cut(s) 245
SgrAI CRCCGGYG 2 cut(s) 104, 370
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 4 cut(s) 496, 502, 595, 862
SsiI CCGC 7 cut(s) 153, 157, 180, 204, 464, 515, 890
SspMI CTAG 1 cut(s) 533
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 4 cut(s) 33, 81, 362, 836
TaaI ACNGT 3 cut(s) 271, 766, 809
TaiI ACGT 2 cut(s) 60, 355
TaqI TCGA 4 cut(s) 246, 539, 555, 689
TasI AATT 4 cut(s) 496, 502, 595, 862
TatI WGTACW 2 cut(s) 271, 458
TauI GCSGC 2 cut(s) 182, 517
TfiI GAWTC 2 cut(s) 471, 880
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 321, 797
TseI GCWGC 1 cut(s) 733
Tsp45I GTSAC 2 cut(s) 321, 797
TspDTI ATGAA 3 cut(s) 17, 463, 568
TspGWI ACGGA 4 cut(s) 39, 128, 441, 747
TspRI CASTG 1 cut(s) 637
VneI GTGCAC 1 cut(s) 767
XapI RAATTY 1 cut(s) 862
XceI RCATGY 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.