MD15G1043200.v1.1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013553
Physical Location & Seq
Reverse (-)
3004087 .. 3004632
546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1043200.v1.1.491

Sequence Viewer

Length: 546 bp
ATGGAAAGACATCATCACTCAATACAAAGCAACAGCAACCTCTGTTCACCAACATCGTCACCCACAACCTTCGTTCAGGCAGACACAAACAACTTCAGAGACCTCGTTCAGAAGCTCACCGGCTTATCCGGCAACTCGGAAAAGCTCCCGGTCACCCACCCAGCAAGGCACTACCCTAAATCACCCACCACTCCCGGTGACCTAACAAGCCCCCGCCGGTCACCGTTCAAGCTCCAAGAGCGGAGACATACCATGAGAAAGCTGGAGATCAAACTCAGCCTCGCCACCCTACACGGCTCTCAGCCGATTCCGAGTCCCATCACACCACTCGGGTTCGACTCGTTTTCATTCCCGAGTTCAGGGTCCGAGTCGCCGTCGTCTCCCGCGGCGGTGGCGGAGGAGGACAAGGCAATTGCGGAGAAGGGTTTTTATTTGCACCCTTCGCCGCTCAGTACGCCCAGAGGGGCCGAGCCGCCCGAGCTGCTGACTCTGTTTCCACTGAGTTCACCCAGTCAACTTGATCACAAGTCTCTGCCGTCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

182

Amino Acids

19.68

Weight (kDa)

8.79

Isoelectric Point (pI)

81.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 20 - 45 1.1e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80450
fragaria_vesca FvH4_6g29370
malus_domestica MD08G1052300.v1.1 MD15G1043200.v1.1 MD17G1215500.v1.1
prunus_persica Prupe.1G396600_v2.0.a1 Prupe.3G091700_v2.0.a1
pyrus_communis pycom08g04360 pycom17g21990
rosa_chinensis RchiOBHm_Chr2g0134771
rosa_laevigata RLG00000019420
rosa_multiflora Rmu_sc0000718.1_g000019
rosa_roxburghii Rroxscaffold_2G00109770
rosa_samantha Rh2AG373800 Rh2BG377500 Rh2CG355600 Rh2DG394500
rosa_wichuraiana Rw2G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 241, 448
AccII CGCG 1 cut(s) 386
AciI CCGC 9 cut(s) 214, 241, 384, 386, 389, 395, 416, 446, 473
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 5 cut(s) 115, 145, 232, 262, 481
AluI AGCT 5 cut(s) 115, 145, 232, 262, 481
Alw26I GTCTC 4 cut(s) 93, 238, 384, 534
Ama87I CYCGRG 3 cut(s) 329, 352, 476
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 363, 465
AsuC2I CCSGG 2 cut(s) 149, 195
AsuHPI GGTGA 8 cut(s) 39, 51, 109, 145, 174, 209, 213, 498
AvaI CYCGRG 3 cut(s) 329, 352, 476
AvaII GGWCC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 326
BceAI ACGGC 3 cut(s) 310, 358, 520
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 149, 195
BcoDI GTCTC 4 cut(s) 93, 238, 384, 534
BisI GCNGC 4 cut(s) 387, 446, 473, 482
BlsI GCNGC 4 cut(s) 388, 447, 474, 483
Bme1390I CCNGG 2 cut(s) 149, 195
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 3 cut(s) 329, 352, 476
BmgT120I GGNCC 2 cut(s) 363, 465
BmiI GGNNCC 2 cut(s) 364, 466
BmrFI CCNGG 2 cut(s) 149, 195
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
BpmI CTGGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 149, 195
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 2 cut(s) 119, 216
Bse1I ACTGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 4 cut(s) 289, 314, 463, 491
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 468
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 467
BsiHKCI CYCGRG 3 cut(s) 329, 352, 476
BsiSI CCGG 5 cut(s) 120, 129, 149, 195, 217
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 4 cut(s) 93, 238, 384, 534
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 1 cut(s) 467
Bso31I GGTCTC 1 cut(s) 93
BsoBI CYCGRG 3 cut(s) 329, 352, 476
Bsp143I GATC 2 cut(s) 267, 520
BspACI CCGC 9 cut(s) 214, 241, 384, 386, 389, 395, 416, 446, 473
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 4 cut(s) 288, 313, 462, 492
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 364, 466
BspTNI GGTCTC 1 cut(s) 93
BsrBI CCGCTC 2 cut(s) 241, 448
BsrFI RCCGGY 2 cut(s) 119, 216
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 2 cut(s) 119, 216
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 2 cut(s) 267, 520
Bst4CI ACNGT 1 cut(s) 225
BstDEI CTNAG 4 cut(s) 275, 300, 449, 500
BstDSI CCRYGG 1 cut(s) 384
BstEII GGTNACC 3 cut(s) 151, 197, 219
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 2 cut(s) 270, 523
BstMAI GTCTC 4 cut(s) 93, 238, 384, 534
BstMBI GATC 2 cut(s) 267, 520
BstMWI GCNNNNNNNGC 7 cut(s) 129, 238, 392, 442, 454, 478, 481
BstPI GGTNACC 3 cut(s) 151, 197, 219
BstSCI CCNGG 2 cut(s) 147, 193
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 468
BsuRI GGCC 1 cut(s) 467
BtgI CCRYGG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 497
Cfr10I RCCGGY 2 cut(s) 119, 216
Cfr13I GGNCC 2 cut(s) 363, 465
Cfr42I CCGCGG 1 cut(s) 387
Csp6I GTAC 1 cut(s) 453
CviAII CATG 1 cut(s) 253
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 4 cut(s) 275, 300, 449, 500
DpnI GATC 2 cut(s) 269, 522
DpnII GATC 2 cut(s) 267, 520
EciI GGCGGA 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 79
Eco88I CYCGRG 3 cut(s) 329, 352, 476
Eco91I GGTNACC 3 cut(s) 151, 197, 219
EcoO65I GGTNACC 3 cut(s) 151, 197, 219
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 1 cut(s) 256
FaiI YATR 2 cut(s) 249, 254
FaqI GGGAC 1 cut(s) 300
FatI CATG 1 cut(s) 252
FauI CCCGC 2 cut(s) 221, 391
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 387, 446, 473, 482
Fsp4HI GCNGC 4 cut(s) 387, 446, 473, 482
GluI GCNGC 4 cut(s) 387, 446, 473, 482
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 467
HapII CCGG 5 cut(s) 120, 129, 149, 195, 217
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HinfI GANTC 5 cut(s) 307, 313, 338, 368, 487
HpaII CCGG 5 cut(s) 120, 129, 149, 195, 217
HphI GGTGA 8 cut(s) 39, 51, 109, 145, 174, 209, 213, 498
Hpy166II GTNNAC 3 cut(s) 47, 506, 515
Hpy188I TCNGA 5 cut(s) 98, 111, 139, 312, 367
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 3 cut(s) 47, 506, 515
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 3 cut(s) 79, 415, 450
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 7 cut(s) 129, 238, 392, 442, 454, 478, 481
HpyF3I CTNAG 4 cut(s) 275, 300, 449, 500
Hsp92II CATG 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 520
KspI CCGCGG 1 cut(s) 387
Kzo9I GATC 2 cut(s) 267, 520
LmnI GCTCC 2 cut(s) 150, 237
Lsp1109I GCAGC 1 cut(s) 468
MaeIII GTNAC 4 cut(s) 57, 151, 197, 219
MalI GATC 2 cut(s) 269, 522
MbiI CCGCTC 2 cut(s) 241, 448
MboI GATC 2 cut(s) 267, 520
MfeI CAATTG 1 cut(s) 411
MluCI AATT 1 cut(s) 411
MlyI GAGTC 4 cut(s) 322, 332, 377, 481
MnlI CCTC 6 cut(s) 50, 113, 290, 391, 394, 455
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 5 cut(s) 120, 129, 149, 195, 217
MspR9I CCNGG 2 cut(s) 149, 195
MunI CAATTG 1 cut(s) 411
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 7 cut(s) 129, 238, 392, 442, 454, 478, 481
NciI CCSGG 2 cut(s) 149, 195
NdeII GATC 2 cut(s) 267, 520
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 364, 466
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 4 cut(s) 57, 151, 197, 219
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 4 cut(s) 388, 447, 474, 483
PleI GAGTC 4 cut(s) 321, 332, 376, 481
PpsI GAGTC 4 cut(s) 321, 332, 376, 481
PspEI GGTNACC 3 cut(s) 151, 197, 219
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 364, 466
PspPI GGNCC 2 cut(s) 363, 465
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SacII CCGCGG 1 cut(s) 387
SatI GCNGC 4 cut(s) 387, 446, 473, 482
Sau3AI GATC 2 cut(s) 267, 520
Sau96I GGNCC 2 cut(s) 363, 465
SchI GAGTC 4 cut(s) 322, 332, 377, 481
ScrFI CCNGG 2 cut(s) 149, 195
SetI ASST 9 cut(s) 42, 71, 105, 117, 147, 204, 234, 264, 483
Sfr303I CCGCGG 1 cut(s) 387
SgrBI CCGCGG 1 cut(s) 387
SinI GGWCC 1 cut(s) 363
Sse9I AATT 1 cut(s) 411
SsiI CCGC 9 cut(s) 214, 241, 384, 386, 389, 395, 416, 446, 473
StyD4I CCNGG 2 cut(s) 147, 193
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 411
TauI GCSGC 3 cut(s) 389, 448, 475
TfiI GAWTC 1 cut(s) 307
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 4 cut(s) 57, 151, 197, 219
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 4 cut(s) 57, 151, 197, 219
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.